Wall clock time and date at job start Tue Mar 31 2020 23:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34230 * 116.99886 * 2 1 4 4 O 1.20822 * 119.99787 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99829 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46893 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46633 * 179.97438 * 6 5 3 8 8 H 1.08991 * 110.42443 * 304.14756 * 7 6 5 9 9 C 1.54485 * 110.36772 * 181.83415 * 7 6 5 10 10 C 1.54504 * 104.06134 * 217.19288 * 9 7 6 11 11 C 1.54479 * 104.06632 * 0.02562 * 10 9 7 12 12 H 1.08995 * 110.46851 * 265.09908 * 11 10 9 13 13 C 1.50697 * 110.37266 * 142.80836 * 11 10 9 14 14 O 1.21287 * 120.00225 * 253.24524 * 13 11 10 15 15 N 1.34776 * 120.00277 * 73.23639 * 13 11 10 16 16 C 1.46505 * 119.99767 * 5.37039 * 15 13 11 17 17 C 1.50699 * 109.46882 * 269.72300 * 16 15 13 18 18 H 1.07998 * 120.00103 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00007 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00042 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47518 * 90.00165 * 21 19 17 23 23 H 1.48507 * 109.47080 * 210.00133 * 21 19 17 24 24 H 1.48495 * 109.47305 * 329.99840 * 21 19 17 25 25 C 1.46500 * 120.00716 * 185.08746 * 15 13 11 26 26 C 1.53004 * 109.46702 * 84.93474 * 25 15 13 27 27 C 1.52994 * 117.50208 * 243.62494 * 26 25 15 28 28 C 1.53004 * 117.49507 * 174.99979 * 26 25 15 29 29 O 1.44423 * 110.37098 * 66.46240 * 7 6 5 30 30 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46631 * 299.99649 * 1 2 3 32 32 H 1.08998 * 109.47280 * 59.99755 * 1 2 3 33 33 H 1.08997 * 109.46967 * 59.99896 * 5 3 2 34 34 H 1.09000 * 109.47202 * 299.99809 * 5 3 2 35 35 H 1.09005 * 109.46820 * 60.00211 * 6 5 3 36 36 H 1.09000 * 109.47283 * 300.00056 * 6 5 3 37 37 H 1.08997 * 110.51552 * 335.84265 * 9 7 6 38 38 H 1.09009 * 110.50792 * 98.54893 * 9 7 6 39 39 H 1.09001 * 110.51157 * 241.35344 * 10 9 7 40 40 H 1.09008 * 110.51089 * 118.65067 * 10 9 7 41 41 H 1.09001 * 109.46841 * 29.72034 * 16 15 13 42 42 H 1.08994 * 109.47365 * 149.72060 * 16 15 13 43 43 H 0.96995 * 120.00197 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.47285 * 204.93956 * 25 15 13 45 45 H 1.08998 * 109.46970 * 324.94223 * 25 15 13 46 46 H 1.08998 * 115.54677 * 29.34123 * 26 25 15 47 47 H 1.09008 * 117.49839 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.50051 * 145.02579 * 27 26 25 49 49 H 1.08994 * 117.49812 * 214.98091 * 28 26 25 50 50 H 1.08991 * 117.49806 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5281 2.8221 -0.0011 8 1 5.9378 2.2698 0.8445 9 6 5.9893 4.2958 0.0448 10 6 7.2394 4.3263 -0.8627 11 6 7.3852 2.8676 -1.3501 12 1 8.0801 2.3206 -0.7130 13 6 7.8530 2.8373 -2.7823 14 8 7.0809 2.5312 -3.6661 15 7 9.1294 3.1505 -3.0811 16 6 10.0919 3.4055 -2.0064 17 6 10.0838 4.8728 -1.6627 18 1 9.4277 5.5478 -2.1921 19 6 10.9147 5.3536 -0.6730 20 7 10.9081 6.6341 -0.3734 21 14 12.0500 4.1861 0.2421 22 1 13.3523 4.1046 -0.4668 23 1 12.2685 4.6886 1.6224 24 1 11.4319 2.8372 0.2985 25 6 9.5560 3.2298 -4.4803 26 6 9.2382 4.6210 -5.0322 27 6 8.2272 4.7130 -6.1768 28 6 9.7149 4.9444 -6.4497 29 8 6.0584 2.3080 -1.2421 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9557 0.7809 -0.8908 34 1 3.9565 0.7806 0.8892 35 1 3.6107 3.2364 0.8890 36 1 3.6101 3.2360 -0.8910 37 1 5.2137 4.9513 -0.3512 38 1 6.2498 4.5829 1.0636 39 1 8.1179 4.6285 -0.2927 40 1 7.0818 4.9969 -1.7075 41 1 9.8160 2.8247 -1.1262 42 1 11.0895 3.1149 -2.3355 43 1 11.4924 6.9723 0.3231 44 1 10.6291 3.0500 -4.5438 45 1 9.0264 2.4774 -5.0648 46 1 9.2468 5.4298 -4.3016 47 1 7.7881 3.7824 -6.5365 48 1 7.5703 5.5824 -6.1994 49 1 10.0365 5.9661 -6.6516 50 1 10.2544 4.1660 -6.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874358058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:34 Heat of formation + Delta-G solvation = -145.536861 kcal Electronic energy + Delta-G solvation = -30645.513362 eV Core-core repulsion = 26445.832968 eV Total energy + Delta-G solvation = -4199.680394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61453 -39.93748 -38.40522 -36.79438 -36.61056 -34.86868 -33.68857 -32.52265 -31.64478 -29.64356 -28.41697 -27.77932 -26.40676 -24.44583 -22.58302 -22.05299 -21.89134 -20.85943 -20.57436 -20.33756 -18.52516 -17.71819 -17.14023 -16.87735 -16.67457 -16.59670 -15.99624 -15.85603 -15.33153 -14.68426 -14.48745 -14.10297 -13.90392 -13.88673 -13.57616 -13.41054 -13.22027 -12.87721 -12.84153 -12.59313 -12.33942 -12.25171 -11.87015 -11.83938 -11.42961 -11.36112 -11.24543 -11.13503 -11.04127 -10.99543 -10.87679 -10.81075 -10.70172 -10.46842 -10.30993 -10.26205 -9.97956 -9.61564 -9.56114 -9.45096 -8.93780 -8.71145 -7.81185 -6.27360 -4.27561 2.08497 2.56570 3.12301 3.19660 3.22764 3.26773 3.46325 4.20503 4.21435 4.38925 4.60093 4.69812 4.86775 4.92123 4.93221 5.00729 5.04766 5.17324 5.21560 5.23994 5.30802 5.34496 5.41210 5.45224 5.48100 5.52562 5.65237 5.83231 5.88734 5.92850 5.96260 6.00468 6.06476 6.15038 6.16072 6.22172 6.27048 6.31119 6.39665 6.48603 6.54336 6.60382 6.82939 6.84861 7.11293 7.33389 7.38785 7.60373 8.06243 8.35072 8.77542 8.90831 9.31440 10.84242 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.003121 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.323453 B = 8968.038118 C =10569.924441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.510 6.510 5 C -0.113 4.113 6 C -0.099 4.099 7 C 0.072 3.928 8 H 0.071 0.929 9 C -0.150 4.150 10 C -0.128 4.128 11 C 0.066 3.934 12 H 0.088 0.912 13 C 0.527 3.473 14 O -0.547 6.547 15 N -0.588 5.588 16 C 0.204 3.796 17 C -0.534 4.534 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.888 5.888 21 Si 0.866 3.134 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.264 1.264 25 C 0.156 3.844 26 C -0.155 4.155 27 C -0.177 4.177 28 C -0.183 4.183 29 O -0.351 6.351 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.324 -9.950 1.091 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.397 6.397 5 C -0.150 4.150 6 C -0.136 4.136 7 C 0.014 3.986 8 H 0.089 0.911 9 C -0.188 4.188 10 C -0.166 4.166 11 C 0.006 3.994 12 H 0.105 0.895 13 C 0.314 3.686 14 O -0.425 6.425 15 N -0.320 5.320 16 C 0.083 3.917 17 C -0.572 4.572 18 H 0.101 0.899 19 C -0.126 4.126 20 N -0.525 5.525 21 Si 0.693 3.307 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.189 1.189 25 C 0.033 3.967 26 C -0.174 4.174 27 C -0.214 4.214 28 C -0.220 4.220 29 O -0.270 6.270 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.136 0.864 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.978 -9.829 0.607 14.748 hybrid contribution 0.733 -0.128 0.767 1.069 sum -10.244 -9.957 1.375 14.352 Atomic orbital electron populations 1.23243 0.76601 1.03543 1.02505 1.86529 1.23302 1.33834 1.84228 1.24024 0.92480 0.81128 0.71858 1.90666 1.67374 1.36351 1.45342 1.21447 0.86577 1.00485 1.06497 1.21495 0.93605 0.94065 1.04457 1.23016 0.93325 0.94380 0.87898 0.91140 1.23013 0.98627 0.96014 1.01113 1.22925 0.99105 0.94285 1.00315 1.22784 0.85734 0.96021 0.94889 0.89492 1.19983 0.81884 0.76781 0.89956 1.90623 1.53981 1.48684 1.49195 1.47781 1.09509 1.67642 1.07070 1.19926 0.88215 0.98047 0.85551 1.21371 1.24315 0.91450 1.20098 0.89860 1.24851 0.96388 0.94841 0.96566 1.69878 1.38629 1.12741 1.31255 0.87012 0.82092 0.81774 0.79870 1.19982 1.20941 1.18896 1.20838 0.99328 0.94549 0.81960 1.22857 1.03138 1.00049 0.91353 1.22931 0.91823 1.02738 1.03868 1.22882 0.97427 1.02070 0.99658 1.89158 1.28393 1.69805 1.39603 0.88221 0.92004 0.91909 0.86611 0.87677 0.89778 0.89936 0.90785 0.90402 0.86716 0.90692 0.94957 0.95111 0.92354 0.90461 0.91086 0.86380 0.89061 0.89588 0.89181 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.96 10.57 -39.26 -0.41 -4.38 16 3 C 0.46 5.63 7.96 36.00 0.29 5.92 16 4 O -0.51 -7.53 15.73 -18.75 -0.29 -7.83 16 5 C -0.11 -1.22 5.73 -27.88 -0.16 -1.38 16 6 C -0.10 -1.21 4.14 -26.73 -0.11 -1.32 16 7 C 0.07 0.98 3.28 -25.95 -0.09 0.89 16 8 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 9 C -0.15 -2.18 6.63 -25.16 -0.17 -2.35 16 10 C -0.13 -2.32 5.24 -25.17 -0.13 -2.45 16 11 C 0.07 1.21 2.85 -27.11 -0.08 1.13 16 12 H 0.09 1.50 6.70 -51.93 -0.35 1.15 16 13 C 0.53 10.83 6.87 -10.99 -0.08 10.75 16 14 O -0.55 -12.53 16.21 -13.48 -0.22 -12.75 16 15 N -0.59 -11.59 2.47 -175.06 -0.43 -12.02 16 16 C 0.20 4.19 3.97 -5.19 -0.02 4.16 16 17 C -0.53 -12.63 7.04 -34.44 -0.24 -12.87 16 18 H 0.08 2.20 6.99 -52.49 -0.37 1.84 16 19 C 0.08 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.89 -24.01 13.96 55.43 0.77 -23.24 16 21 Si 0.87 18.58 27.47 -169.99 -4.67 13.91 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.26 -5.32 6.54 56.52 0.37 -4.95 16 25 C 0.16 2.78 5.73 -4.04 -0.02 2.75 16 26 C -0.15 -2.74 5.98 -90.62 -0.54 -3.28 16 27 C -0.18 -2.82 10.18 -26.73 -0.27 -3.09 16 28 C -0.18 -2.67 10.25 -26.73 -0.27 -2.95 16 29 O -0.35 -6.13 10.27 -54.27 -0.56 -6.69 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.12 1.32 7.91 -51.93 -0.41 0.91 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 38 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.11 2.27 6.48 -51.93 -0.34 1.93 16 40 H 0.07 1.50 7.86 -51.92 -0.41 1.09 16 41 H 0.03 0.65 5.27 -51.93 -0.27 0.37 16 42 H 0.03 0.62 7.28 -51.93 -0.38 0.24 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.08 1.25 7.83 -51.93 -0.41 0.84 16 45 H 0.07 1.25 7.24 -51.93 -0.38 0.87 16 46 H 0.12 2.43 7.02 -51.93 -0.36 2.07 16 47 H 0.09 1.45 8.03 -51.92 -0.42 1.04 16 48 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 403.56 15.07 6.08 6.08 Total: -1.00 -30.18 403.56 -8.96 -39.15 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.31 Total: 8.66 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.93 Total: -0.90 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.34 Total: -35.26 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.49 Total: -31.64 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.67 Total: 13.91 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.18 -8.96 -39.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.390 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds