Wall clock time and date at job start Tue Mar 31 2020 23:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34230 * 116.99886 * 2 1 4 4 O 1.20822 * 119.99787 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99829 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46893 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46633 * 179.97438 * 6 5 3 8 8 H 1.08991 * 110.42443 * 304.14756 * 7 6 5 9 9 C 1.54485 * 110.36772 * 181.83415 * 7 6 5 10 10 C 1.54504 * 104.06134 * 217.19288 * 9 7 6 11 11 C 1.54479 * 104.06632 * 0.02562 * 10 9 7 12 12 H 1.08995 * 110.46851 * 265.09908 * 11 10 9 13 13 C 1.50697 * 110.37266 * 142.80836 * 11 10 9 14 14 O 1.21287 * 120.00225 * 253.24524 * 13 11 10 15 15 N 1.34776 * 120.00277 * 73.23639 * 13 11 10 16 16 C 1.46505 * 119.99767 * 5.37039 * 15 13 11 17 17 C 1.50699 * 109.46882 * 269.72300 * 16 15 13 18 18 H 1.07998 * 120.00103 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00007 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00042 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47518 * 90.00165 * 21 19 17 23 23 H 1.48507 * 109.47080 * 210.00133 * 21 19 17 24 24 H 1.48495 * 109.47305 * 329.99840 * 21 19 17 25 25 C 1.46500 * 120.00716 * 185.08746 * 15 13 11 26 26 C 1.53004 * 109.46702 * 84.93474 * 25 15 13 27 27 C 1.52994 * 117.50208 * 243.62494 * 26 25 15 28 28 C 1.53004 * 117.49507 * 174.99979 * 26 25 15 29 29 O 1.44423 * 110.37098 * 66.46240 * 7 6 5 30 30 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46631 * 299.99649 * 1 2 3 32 32 H 1.08998 * 109.47280 * 59.99755 * 1 2 3 33 33 H 1.08997 * 109.46967 * 59.99896 * 5 3 2 34 34 H 1.09000 * 109.47202 * 299.99809 * 5 3 2 35 35 H 1.09005 * 109.46820 * 60.00211 * 6 5 3 36 36 H 1.09000 * 109.47283 * 300.00056 * 6 5 3 37 37 H 1.08997 * 110.51552 * 335.84265 * 9 7 6 38 38 H 1.09009 * 110.50792 * 98.54893 * 9 7 6 39 39 H 1.09001 * 110.51157 * 241.35344 * 10 9 7 40 40 H 1.09008 * 110.51089 * 118.65067 * 10 9 7 41 41 H 1.09001 * 109.46841 * 29.72034 * 16 15 13 42 42 H 1.08994 * 109.47365 * 149.72060 * 16 15 13 43 43 H 0.96995 * 120.00197 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.47285 * 204.93956 * 25 15 13 45 45 H 1.08998 * 109.46970 * 324.94223 * 25 15 13 46 46 H 1.08998 * 115.54677 * 29.34123 * 26 25 15 47 47 H 1.09008 * 117.49839 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.50051 * 145.02579 * 27 26 25 49 49 H 1.08994 * 117.49812 * 214.98091 * 28 26 25 50 50 H 1.08991 * 117.49806 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5281 2.8221 -0.0011 8 1 5.9378 2.2698 0.8445 9 6 5.9893 4.2958 0.0448 10 6 7.2394 4.3263 -0.8627 11 6 7.3852 2.8676 -1.3501 12 1 8.0801 2.3206 -0.7130 13 6 7.8530 2.8373 -2.7823 14 8 7.0809 2.5312 -3.6661 15 7 9.1294 3.1505 -3.0811 16 6 10.0919 3.4055 -2.0064 17 6 10.0838 4.8728 -1.6627 18 1 9.4277 5.5478 -2.1921 19 6 10.9147 5.3536 -0.6730 20 7 10.9081 6.6341 -0.3734 21 14 12.0500 4.1861 0.2421 22 1 13.3523 4.1046 -0.4668 23 1 12.2685 4.6886 1.6224 24 1 11.4319 2.8372 0.2985 25 6 9.5560 3.2298 -4.4803 26 6 9.2382 4.6210 -5.0322 27 6 8.2272 4.7130 -6.1768 28 6 9.7149 4.9444 -6.4497 29 8 6.0584 2.3080 -1.2421 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9557 0.7809 -0.8908 34 1 3.9565 0.7806 0.8892 35 1 3.6107 3.2364 0.8890 36 1 3.6101 3.2360 -0.8910 37 1 5.2137 4.9513 -0.3512 38 1 6.2498 4.5829 1.0636 39 1 8.1179 4.6285 -0.2927 40 1 7.0818 4.9969 -1.7075 41 1 9.8160 2.8247 -1.1262 42 1 11.0895 3.1149 -2.3355 43 1 11.4924 6.9723 0.3231 44 1 10.6291 3.0500 -4.5438 45 1 9.0264 2.4774 -5.0648 46 1 9.2468 5.4298 -4.3016 47 1 7.7881 3.7824 -6.5365 48 1 7.5703 5.5824 -6.1994 49 1 10.0365 5.9661 -6.6516 50 1 10.2544 4.1660 -6.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874358058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:33 Heat of formation + Delta-G solvation = -161.411868 kcal Electronic energy + Delta-G solvation = -30646.201754 eV Core-core repulsion = 26445.832968 eV Total energy + Delta-G solvation = -4200.368786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60633 -41.33858 -39.78869 -38.11365 -37.62472 -36.51774 -34.74171 -34.38549 -32.99919 -30.86290 -30.01290 -28.80982 -27.68086 -25.64459 -24.34207 -23.30925 -23.15723 -22.05517 -21.77738 -21.51606 -20.05870 -18.95751 -18.66847 -18.15494 -17.80606 -17.65297 -17.47223 -17.05092 -16.62065 -16.32413 -15.80410 -15.54969 -15.22120 -14.93377 -14.85078 -14.58332 -14.54871 -14.47645 -14.05381 -13.85135 -13.77468 -13.47790 -13.21830 -12.90974 -12.82795 -12.75208 -12.56933 -12.49280 -12.38433 -12.35346 -12.03441 -11.98586 -11.89717 -11.79845 -11.65510 -11.51134 -11.46488 -11.28318 -10.94192 -10.80594 -10.70753 -10.39610 -9.45100 -8.19495 -6.23437 1.15541 1.44621 1.47873 1.54788 1.65014 1.76643 2.01143 2.40912 2.89469 3.06730 3.14031 3.53203 3.64166 3.74552 3.85629 3.92715 3.97892 4.04234 4.09587 4.15133 4.19649 4.28104 4.29072 4.32401 4.41965 4.47163 4.53961 4.64384 4.67657 4.70356 4.71846 4.74215 4.76098 4.83367 4.92317 4.99782 5.00791 5.02695 5.13234 5.20641 5.24918 5.32137 5.36166 5.39664 5.50750 5.68916 5.90270 6.26467 6.60962 6.70291 6.81518 7.26844 7.40443 8.95443 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.003121 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.323453 B = 8968.038118 C =10569.924441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.542 6.542 5 C -0.108 4.108 6 C -0.094 4.094 7 C 0.073 3.927 8 H 0.103 0.897 9 C -0.146 4.146 10 C -0.122 4.122 11 C 0.069 3.931 12 H 0.106 0.894 13 C 0.519 3.481 14 O -0.576 6.576 15 N -0.589 5.589 16 C 0.208 3.792 17 C -0.517 4.517 18 H 0.040 0.960 19 C 0.026 3.974 20 N -0.939 5.939 21 Si 0.927 3.073 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.235 1.235 25 C 0.154 3.846 26 C -0.180 4.180 27 C -0.178 4.178 28 C -0.153 4.153 29 O -0.367 6.367 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.265 0.735 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 -12.689 1.961 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.433 6.433 5 C -0.145 4.145 6 C -0.131 4.131 7 C 0.016 3.984 8 H 0.121 0.879 9 C -0.184 4.184 10 C -0.160 4.160 11 C 0.009 3.991 12 H 0.123 0.877 13 C 0.307 3.693 14 O -0.456 6.456 15 N -0.319 5.319 16 C 0.086 3.914 17 C -0.556 4.556 18 H 0.059 0.941 19 C -0.173 4.173 20 N -0.579 5.579 21 Si 0.751 3.249 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.158 1.158 25 C 0.031 3.969 26 C -0.199 4.199 27 C -0.215 4.215 28 C -0.190 4.190 29 O -0.286 6.286 30 H 0.149 0.851 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.116 0.884 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.494 -12.602 1.463 16.464 hybrid contribution 0.472 0.789 0.420 1.011 sum -10.022 -11.813 1.883 15.606 Atomic orbital electron populations 1.23533 0.75010 1.05652 1.02404 1.86517 1.24921 1.33027 1.83736 1.24255 0.92960 0.81010 0.70917 1.90655 1.68158 1.37403 1.47036 1.21436 0.85789 0.99526 1.07739 1.21427 0.92516 0.95206 1.03968 1.23256 0.94130 0.93566 0.87444 0.87917 1.23024 0.96775 0.97201 1.01366 1.22723 1.00116 0.93764 0.99430 1.22752 0.86760 0.96019 0.93591 0.87676 1.20466 0.81827 0.76156 0.90833 1.90592 1.54605 1.50175 1.50269 1.47847 1.09308 1.66947 1.07827 1.19859 0.89179 0.95848 0.86485 1.21369 1.22655 0.92620 1.18951 0.94146 1.25596 0.98062 0.96124 0.97556 1.70037 1.40254 1.15118 1.32508 0.86019 0.79983 0.80913 0.77967 1.19789 1.21548 1.15757 1.21003 1.00439 0.94455 0.80999 1.22665 1.06178 0.99005 0.92086 1.22943 0.92803 1.02801 1.02933 1.22991 0.96163 1.03354 0.96533 1.89152 1.27905 1.69907 1.41676 0.85054 0.91758 0.92435 0.87141 0.84477 0.88265 0.92500 0.91038 0.88195 0.88590 0.94169 0.93349 0.93499 0.92580 0.88585 0.90773 0.90310 0.88813 0.89865 0.88378 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.37 -7.40 10.57 -51.42 -0.54 -7.95 16 3 C 0.46 10.76 7.96 71.24 0.57 11.32 16 4 O -0.54 -15.80 15.73 21.98 0.35 -15.45 16 5 C -0.11 -2.12 5.73 29.85 0.17 -1.95 16 6 C -0.09 -2.16 4.14 30.60 0.13 -2.04 16 7 C 0.07 1.86 3.28 31.10 0.10 1.96 16 8 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 9 C -0.15 -4.16 6.63 31.61 0.21 -3.95 16 10 C -0.12 -4.52 5.24 31.61 0.17 -4.35 16 11 C 0.07 2.50 2.85 30.35 0.09 2.59 16 12 H 0.11 3.39 6.70 -2.39 -0.02 3.38 16 13 C 0.52 21.46 6.87 87.66 0.60 22.06 16 14 O -0.58 -26.78 16.21 15.15 0.25 -26.53 16 15 N -0.59 -23.10 2.47 -826.15 -2.04 -25.14 16 16 C 0.21 8.30 3.97 85.63 0.34 8.64 16 17 C -0.52 -24.97 7.04 25.60 0.18 -24.79 16 18 H 0.04 2.28 6.99 -2.91 -0.02 2.26 16 19 C 0.03 1.28 5.47 84.66 0.46 1.74 16 20 N -0.94 -52.42 13.96 21.45 0.30 -52.12 16 21 Si 0.93 37.23 27.47 68.60 1.88 39.11 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.23 -8.24 6.54 99.48 0.65 -7.58 16 25 C 0.15 5.38 5.73 86.38 0.49 5.87 16 26 C -0.18 -6.49 5.98 -10.79 -0.06 -6.55 16 27 C -0.18 -5.70 10.18 30.59 0.31 -5.39 16 28 C -0.15 -4.28 10.25 30.60 0.31 -3.97 16 29 O -0.37 -12.49 10.27 -130.78 -1.34 -13.83 16 30 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 32 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.11 2.35 7.91 -2.39 -0.02 2.34 16 34 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 2.00 8.10 -2.38 -0.02 1.98 16 36 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.07 2.06 7.87 -2.39 -0.02 2.04 16 38 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 39 H 0.10 3.89 6.48 -2.39 -0.02 3.88 16 40 H 0.04 1.72 7.86 -2.38 -0.02 1.70 16 41 H 0.05 1.81 5.27 -2.39 -0.01 1.80 16 42 H 0.05 1.76 7.28 -2.39 -0.02 1.74 16 43 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.10 2.94 7.83 -2.39 -0.02 2.92 16 45 H 0.07 2.55 7.24 -2.39 -0.02 2.54 16 46 H 0.08 3.48 7.02 -2.39 -0.02 3.46 16 47 H 0.09 2.96 8.03 -2.38 -0.02 2.94 16 48 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 49 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 50 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -68.39 403.56 4.99 -63.41 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.87 Total: 35.71 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.27 Total: 2.79 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -1.74 Total: -77.26 kcal Atomic # 8 Polarization: -62.47 SS G_CDS: -1.30 Total: -63.76 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 1.88 Total: 39.11 kcal Total: -68.39 4.99 -63.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.005 kcal (2) G-P(sol) polarization free energy of solvation -68.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds