Wall clock time and date at job start Tue Mar 31 2020 22:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47478 * 2 1 4 4 O 1.45199 * 109.47061 * 120.00646 * 2 1 3 5 5 C 1.34234 * 116.99821 * 269.99129 * 4 2 1 6 6 O 1.20827 * 119.99968 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99940 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46781 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.29567 * 52.85595 * 8 7 5 10 10 C 1.54547 * 110.33106 * 175.00573 * 8 7 5 11 11 C 1.54710 * 104.07623 * 142.65164 * 10 8 7 12 12 C 1.53557 * 103.75076 * 359.30332 * 11 10 8 13 13 C 1.52820 * 115.45993 * 106.80010 * 12 11 10 14 14 C 1.53953 * 86.79078 * 142.33520 * 13 12 11 15 15 C 1.52809 * 115.48827 * 207.50391 * 12 11 10 16 16 O 1.43348 * 106.13333 * 337.17371 * 12 11 10 17 17 C 1.50707 * 109.46875 * 240.00170 * 2 1 3 18 18 O 1.21275 * 119.99963 * 256.02763 * 17 2 1 19 19 N 1.34777 * 119.99994 * 76.02759 * 17 2 1 20 20 C 1.46500 * 119.99704 * 5.36422 * 19 17 2 21 21 C 1.46498 * 119.99950 * 185.36480 * 19 17 2 22 22 C 1.50703 * 109.47018 * 90.00383 * 21 19 17 23 23 H 1.07999 * 119.99809 * 359.97438 * 22 21 19 24 24 C 1.37873 * 119.99674 * 180.02562 * 22 21 19 25 25 N 1.31514 * 119.99741 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00315 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.46952 * 90.00401 * 26 24 22 28 28 H 1.48496 * 109.47378 * 210.00264 * 26 24 22 29 29 H 1.48502 * 109.47116 * 330.00525 * 26 24 22 30 30 H 1.08996 * 109.47212 * 186.13826 * 1 2 3 31 31 H 1.08999 * 109.46950 * 306.13067 * 1 2 3 32 32 H 1.08997 * 109.47170 * 66.13112 * 1 2 3 33 33 H 1.09005 * 109.46804 * 60.00613 * 7 5 4 34 34 H 1.08990 * 109.47457 * 300.00621 * 7 5 4 35 35 H 1.08995 * 110.50773 * 23.99920 * 10 8 7 36 36 H 1.09002 * 110.50705 * 261.30030 * 10 8 7 37 37 H 1.09003 * 110.56882 * 240.73953 * 11 10 8 38 38 H 1.09002 * 110.70107 * 117.92780 * 11 10 8 39 39 H 1.09002 * 113.65540 * 256.80871 * 13 12 11 40 40 H 1.08994 * 113.66273 * 27.85970 * 13 12 11 41 41 H 1.09009 * 113.58721 * 89.87761 * 14 13 12 42 42 H 1.08998 * 113.58566 * 220.69181 * 14 13 12 43 43 H 1.09003 * 113.65767 * 332.16387 * 15 12 11 44 44 H 1.08996 * 113.65878 * 103.11953 * 15 12 11 45 45 H 1.08994 * 109.47046 * 84.82294 * 20 19 17 46 46 H 1.09005 * 109.47064 * 204.82245 * 20 19 17 47 47 H 1.09001 * 109.47432 * 324.82361 * 20 19 17 48 48 H 1.09002 * 109.46752 * 209.99664 * 21 19 17 49 49 H 1.08993 * 109.46897 * 330.00087 * 21 19 17 50 50 H 0.97005 * 119.99989 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2173 0.0638 2.2811 6 8 1.9976 1.2516 2.2506 7 6 2.7183 -0.5775 3.5494 8 6 2.8626 0.4886 4.6374 9 1 1.9327 1.0469 4.7453 10 6 3.2553 -0.1656 5.9814 11 6 4.2391 0.8445 6.6182 12 6 4.3321 1.9694 5.5770 13 6 3.6151 3.2674 5.9464 14 6 4.7923 4.0050 5.2829 15 6 5.6428 2.7550 5.5731 16 8 3.9535 1.3848 4.3241 17 6 2.0323 -0.7104 -1.2306 18 8 2.4735 -1.8367 -1.1429 19 7 1.9912 -0.0941 -2.4285 20 6 1.5689 1.3059 -2.5177 21 6 2.3687 -0.8242 -3.6412 22 6 1.1503 -1.4916 -4.2254 23 1 0.1909 -1.3832 -3.7415 24 6 1.2608 -2.2415 -5.3771 25 7 0.1977 -2.8244 -5.8867 26 14 2.9204 -2.4297 -6.2136 27 1 3.6179 -3.6214 -5.6671 28 1 2.7215 -2.5996 -7.6754 29 1 3.7411 -1.2177 -5.9633 30 1 -0.3633 -1.0217 0.1099 31 1 -0.3633 0.6059 0.8300 32 1 -0.3633 0.4158 -0.9397 33 1 3.6872 -1.0412 3.3638 34 1 2.0089 -1.3371 3.8773 35 1 3.7479 -1.1227 5.8107 36 1 2.3773 -0.2944 6.6143 37 1 5.2148 0.3837 6.7723 38 1 3.8439 1.2260 7.5597 39 1 2.6654 3.4048 5.4293 40 1 3.5425 3.4366 7.0207 41 1 4.6446 4.1947 4.2197 42 1 5.1166 4.8900 5.8303 43 1 6.1406 2.7801 6.5425 44 1 6.3140 2.4820 4.7589 45 1 2.4228 1.9558 -2.3267 46 1 1.1773 1.5044 -3.5155 47 1 0.7925 1.4992 -1.7776 48 1 2.7859 -0.1283 -4.3691 49 1 3.1134 -1.5803 -3.3930 50 1 0.2753 -3.3517 -6.6972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885638312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:32 Heat of formation + Delta-G solvation = -138.026195 kcal Electronic energy + Delta-G solvation = -30234.360329 eV Core-core repulsion = 26035.005622 eV Total energy + Delta-G solvation = -4199.354707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.06235 -40.45467 -39.00102 -36.94824 -36.14807 -34.98228 -32.87295 -32.67284 -31.89425 -31.04790 -28.39189 -26.63476 -26.16016 -25.98798 -24.42038 -23.12248 -22.17950 -21.45285 -20.50917 -19.61685 -18.79932 -17.94558 -16.98518 -16.85718 -16.75578 -16.20879 -15.95554 -15.75107 -15.52594 -15.20886 -14.83741 -14.67680 -14.11743 -13.90207 -13.63317 -13.33389 -13.13566 -13.00396 -12.77438 -12.50849 -12.46359 -12.36934 -12.26748 -12.17116 -12.00951 -11.91206 -11.71312 -11.48805 -11.39919 -11.30519 -11.10908 -10.95024 -10.80222 -10.67662 -10.53205 -10.48153 -10.41697 -10.16698 -9.81893 -9.56645 -9.00375 -8.60771 -7.77670 -6.10844 -4.10236 2.21797 2.47885 3.17760 3.28980 3.32132 3.35009 3.37170 3.80009 4.06201 4.18116 4.26106 4.38313 4.47809 4.53698 4.61075 4.65369 4.73376 4.79446 4.90039 5.01287 5.04158 5.09439 5.12464 5.22781 5.27686 5.29170 5.40831 5.42717 5.44746 5.50750 5.54903 5.61615 5.70703 5.71508 5.75294 5.75814 5.80642 5.93566 5.99873 6.06776 6.25028 6.46187 6.66375 6.70551 6.91189 7.25442 7.57204 7.76733 8.12389 8.43357 8.82708 8.92355 9.48974 11.02264 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.002183 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.800452 B =12821.534798 C =12997.083419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.103 0.897 4 O -0.329 6.329 5 C 0.460 3.540 6 O -0.501 6.501 7 C -0.110 4.110 8 C 0.089 3.911 9 H 0.080 0.920 10 C -0.151 4.151 11 C -0.138 4.138 12 C 0.079 3.921 13 C -0.156 4.156 14 C -0.136 4.136 15 C -0.129 4.129 16 O -0.334 6.334 17 C 0.513 3.487 18 O -0.521 6.521 19 N -0.592 5.592 20 C 0.074 3.926 21 C 0.216 3.784 22 C -0.532 4.532 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.896 5.896 26 Si 0.876 3.124 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.266 1.266 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.039 0.961 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 11.824 26.816 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 H 0.121 0.879 4 O -0.244 6.244 5 C 0.303 3.697 6 O -0.388 6.388 7 C -0.147 4.147 8 C 0.031 3.969 9 H 0.098 0.902 10 C -0.189 4.189 11 C -0.176 4.176 12 C 0.039 3.961 13 C -0.194 4.194 14 C -0.173 4.173 15 C -0.166 4.166 16 O -0.253 6.253 17 C 0.298 3.702 18 O -0.396 6.396 19 N -0.326 5.326 20 C -0.070 4.070 21 C 0.095 3.905 22 C -0.570 4.570 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.534 5.534 26 Si 0.703 3.297 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.190 1.190 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.559 11.495 26.419 29.549 hybrid contribution 0.488 -0.077 -0.528 0.723 sum 7.047 11.417 25.891 29.161 Atomic orbital electron populations 1.22157 0.91953 1.04225 1.03832 1.22597 0.96095 0.97272 0.82619 0.87948 1.86626 1.76584 1.41549 1.19661 1.23583 0.74463 0.86054 0.85634 1.90659 1.47624 1.16347 1.84215 1.21503 1.05014 0.98793 0.89411 1.22819 0.91970 0.89791 0.92334 0.90180 1.23015 1.00163 0.99759 0.95922 1.22754 1.00318 0.95876 0.98659 1.22641 0.96779 0.92145 0.84540 1.23341 0.99102 0.96003 1.00942 1.22828 0.96184 0.96726 1.01579 1.22914 0.95561 0.95453 1.02676 1.89068 1.50562 1.58656 1.26984 1.19803 0.79887 0.86731 0.83810 1.90685 1.45137 1.18373 1.85399 1.47738 1.65699 1.12024 1.07125 1.21858 0.99142 0.82137 1.03869 1.19738 0.97294 0.92402 0.81019 1.21316 0.95036 1.31114 1.09541 0.90654 1.24850 0.96600 0.94763 0.96754 1.69894 1.28825 1.33006 1.21694 0.86844 0.84587 0.79430 0.78810 1.19841 1.21027 1.19025 0.90555 0.91266 0.89428 0.86596 0.86055 0.90052 0.90040 0.90330 0.90319 0.90611 0.89415 0.89673 0.91388 0.88937 0.90421 0.93303 0.89896 0.91917 0.94857 0.94291 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.19 37.16 0.34 -2.10 16 2 C 0.07 1.24 2.14 -27.88 -0.06 1.18 16 3 H 0.10 1.63 6.31 -51.93 -0.33 1.30 16 4 O -0.33 -5.55 9.47 -45.76 -0.43 -5.99 16 5 C 0.46 6.58 7.86 36.01 0.28 6.86 16 6 O -0.50 -8.04 14.82 -22.33 -0.33 -8.37 16 7 C -0.11 -1.08 5.44 -27.88 -0.15 -1.24 16 8 C 0.09 0.84 2.75 -25.92 -0.07 0.77 16 9 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 10 C -0.15 -0.98 6.64 -25.02 -0.17 -1.14 16 11 C -0.14 -0.90 6.48 -25.54 -0.17 -1.06 16 12 C 0.08 0.69 1.13 -90.53 -0.10 0.59 16 13 C -0.16 -1.23 7.57 -26.33 -0.20 -1.43 16 14 C -0.14 -1.09 8.09 -25.75 -0.21 -1.30 16 15 C -0.13 -0.99 7.61 -26.33 -0.20 -1.19 16 16 O -0.33 -3.96 10.69 -42.16 -0.45 -4.41 16 17 C 0.51 11.07 6.95 -10.98 -0.08 10.99 16 18 O -0.52 -13.40 16.13 -13.54 -0.22 -13.62 16 19 N -0.59 -12.52 2.86 -182.95 -0.52 -13.04 16 20 C 0.07 1.16 9.79 59.85 0.59 1.75 16 21 C 0.22 5.33 4.25 -5.19 -0.02 5.30 16 22 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 23 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 24 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 25 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 26 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 27 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.26 6.33 -51.93 -0.33 0.93 16 33 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.46 7.87 -51.93 -0.41 0.06 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 38 H 0.08 0.40 7.84 -51.93 -0.41 -0.01 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.52 7.97 -51.93 -0.41 0.11 16 41 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 47 H 0.06 0.85 4.92 -51.93 -0.26 0.59 16 48 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 49 H 0.04 1.03 6.78 -51.93 -0.35 0.68 16 50 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -36.41 402.57 -8.79 -45.20 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.35 Total: -0.48 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.65 Total: 4.45 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.25 Total: -39.76 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.43 Total: -32.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.41 -8.79 -45.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885638312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.829 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds