Wall clock time and date at job start Tue Mar 31 2020 22:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47478 * 2 1 4 4 O 1.45199 * 109.47061 * 120.00646 * 2 1 3 5 5 C 1.34234 * 116.99821 * 269.99129 * 4 2 1 6 6 O 1.20827 * 119.99968 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99940 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46781 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.29567 * 52.85595 * 8 7 5 10 10 C 1.54547 * 110.33106 * 175.00573 * 8 7 5 11 11 C 1.54710 * 104.07623 * 142.65164 * 10 8 7 12 12 C 1.53557 * 103.75076 * 359.30332 * 11 10 8 13 13 C 1.52820 * 115.45993 * 106.80010 * 12 11 10 14 14 C 1.53953 * 86.79078 * 142.33520 * 13 12 11 15 15 C 1.52809 * 115.48827 * 207.50391 * 12 11 10 16 16 O 1.43348 * 106.13333 * 337.17371 * 12 11 10 17 17 C 1.50707 * 109.46875 * 240.00170 * 2 1 3 18 18 O 1.21275 * 119.99963 * 256.02763 * 17 2 1 19 19 N 1.34777 * 119.99994 * 76.02759 * 17 2 1 20 20 C 1.46500 * 119.99704 * 5.36422 * 19 17 2 21 21 C 1.46498 * 119.99950 * 185.36480 * 19 17 2 22 22 C 1.50703 * 109.47018 * 90.00383 * 21 19 17 23 23 H 1.07999 * 119.99809 * 359.97438 * 22 21 19 24 24 C 1.37873 * 119.99674 * 180.02562 * 22 21 19 25 25 N 1.31514 * 119.99741 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00315 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.46952 * 90.00401 * 26 24 22 28 28 H 1.48496 * 109.47378 * 210.00264 * 26 24 22 29 29 H 1.48502 * 109.47116 * 330.00525 * 26 24 22 30 30 H 1.08996 * 109.47212 * 186.13826 * 1 2 3 31 31 H 1.08999 * 109.46950 * 306.13067 * 1 2 3 32 32 H 1.08997 * 109.47170 * 66.13112 * 1 2 3 33 33 H 1.09005 * 109.46804 * 60.00613 * 7 5 4 34 34 H 1.08990 * 109.47457 * 300.00621 * 7 5 4 35 35 H 1.08995 * 110.50773 * 23.99920 * 10 8 7 36 36 H 1.09002 * 110.50705 * 261.30030 * 10 8 7 37 37 H 1.09003 * 110.56882 * 240.73953 * 11 10 8 38 38 H 1.09002 * 110.70107 * 117.92780 * 11 10 8 39 39 H 1.09002 * 113.65540 * 256.80871 * 13 12 11 40 40 H 1.08994 * 113.66273 * 27.85970 * 13 12 11 41 41 H 1.09009 * 113.58721 * 89.87761 * 14 13 12 42 42 H 1.08998 * 113.58566 * 220.69181 * 14 13 12 43 43 H 1.09003 * 113.65767 * 332.16387 * 15 12 11 44 44 H 1.08996 * 113.65878 * 103.11953 * 15 12 11 45 45 H 1.08994 * 109.47046 * 84.82294 * 20 19 17 46 46 H 1.09005 * 109.47064 * 204.82245 * 20 19 17 47 47 H 1.09001 * 109.47432 * 324.82361 * 20 19 17 48 48 H 1.09002 * 109.46752 * 209.99664 * 21 19 17 49 49 H 1.08993 * 109.46897 * 330.00087 * 21 19 17 50 50 H 0.97005 * 119.99989 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2173 0.0638 2.2811 6 8 1.9976 1.2516 2.2506 7 6 2.7183 -0.5775 3.5494 8 6 2.8626 0.4886 4.6374 9 1 1.9327 1.0469 4.7453 10 6 3.2553 -0.1656 5.9814 11 6 4.2391 0.8445 6.6182 12 6 4.3321 1.9694 5.5770 13 6 3.6151 3.2674 5.9464 14 6 4.7923 4.0050 5.2829 15 6 5.6428 2.7550 5.5731 16 8 3.9535 1.3848 4.3241 17 6 2.0323 -0.7104 -1.2306 18 8 2.4735 -1.8367 -1.1429 19 7 1.9912 -0.0941 -2.4285 20 6 1.5689 1.3059 -2.5177 21 6 2.3687 -0.8242 -3.6412 22 6 1.1503 -1.4916 -4.2254 23 1 0.1909 -1.3832 -3.7415 24 6 1.2608 -2.2415 -5.3771 25 7 0.1977 -2.8244 -5.8867 26 14 2.9204 -2.4297 -6.2136 27 1 3.6179 -3.6214 -5.6671 28 1 2.7215 -2.5996 -7.6754 29 1 3.7411 -1.2177 -5.9633 30 1 -0.3633 -1.0217 0.1099 31 1 -0.3633 0.6059 0.8300 32 1 -0.3633 0.4158 -0.9397 33 1 3.6872 -1.0412 3.3638 34 1 2.0089 -1.3371 3.8773 35 1 3.7479 -1.1227 5.8107 36 1 2.3773 -0.2944 6.6143 37 1 5.2148 0.3837 6.7723 38 1 3.8439 1.2260 7.5597 39 1 2.6654 3.4048 5.4293 40 1 3.5425 3.4366 7.0207 41 1 4.6446 4.1947 4.2197 42 1 5.1166 4.8900 5.8303 43 1 6.1406 2.7801 6.5425 44 1 6.3140 2.4820 4.7589 45 1 2.4228 1.9558 -2.3267 46 1 1.1773 1.5044 -3.5155 47 1 0.7925 1.4992 -1.7776 48 1 2.7859 -0.1283 -4.3691 49 1 3.1134 -1.5803 -3.3930 50 1 0.2753 -3.3517 -6.6972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885638312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:30 Heat of formation + Delta-G solvation = -160.580880 kcal Electronic energy + Delta-G solvation = -30235.338374 eV Core-core repulsion = 26035.005622 eV Total energy + Delta-G solvation = -4200.332752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04724 -41.41108 -40.54283 -37.92626 -37.13824 -36.74952 -34.83267 -33.59214 -33.11937 -31.91219 -30.28418 -27.67685 -27.31154 -26.62925 -25.88823 -24.35851 -23.39008 -22.22504 -21.55204 -20.40257 -20.23695 -19.18344 -19.06839 -18.21780 -17.77877 -17.37766 -17.05122 -16.75640 -16.64327 -16.37312 -16.11397 -15.82001 -15.63630 -14.89211 -14.78262 -14.57745 -14.38336 -14.13609 -13.90858 -13.77710 -13.71115 -13.48624 -13.38510 -13.30230 -13.15552 -13.08708 -12.84800 -12.65818 -12.56341 -12.47187 -12.40742 -12.05801 -11.95138 -11.86982 -11.75794 -11.73808 -11.55988 -11.34770 -11.04668 -10.84419 -10.71366 -10.48946 -9.53712 -8.35146 -6.40769 1.09137 1.27329 1.34012 1.36904 1.45072 1.50965 2.29874 2.31820 2.70400 2.98841 3.34059 3.43901 3.54783 3.61477 3.64798 3.76313 3.79929 3.89362 4.00897 4.02530 4.08513 4.22871 4.27242 4.41516 4.48694 4.50392 4.52616 4.57447 4.64728 4.73932 4.76993 4.81621 4.82064 4.83008 4.88755 4.97959 5.01117 5.03368 5.04613 5.16626 5.19457 5.30436 5.32780 5.41259 5.42657 5.49973 6.07169 6.19938 6.44548 6.60388 6.64313 7.10795 7.25935 8.81273 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.002183 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.800452 B =12821.534798 C =12997.083419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.081 3.919 3 H 0.118 0.882 4 O -0.347 6.347 5 C 0.457 3.543 6 O -0.521 6.521 7 C -0.106 4.106 8 C 0.085 3.915 9 H 0.071 0.929 10 C -0.144 4.144 11 C -0.134 4.134 12 C 0.065 3.935 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.126 4.126 16 O -0.371 6.371 17 C 0.503 3.497 18 O -0.574 6.574 19 N -0.598 5.598 20 C 0.066 3.934 21 C 0.222 3.778 22 C -0.538 4.538 23 H 0.034 0.966 24 C 0.013 3.987 25 N -0.942 5.942 26 Si 0.946 3.054 27 H -0.277 1.277 28 H -0.274 1.274 29 H -0.239 1.239 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.057 0.943 49 H 0.021 0.979 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 12.997 28.888 32.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.136 0.864 4 O -0.263 6.263 5 C 0.301 3.699 6 O -0.410 6.410 7 C -0.143 4.143 8 C 0.028 3.972 9 H 0.089 0.911 10 C -0.182 4.182 11 C -0.172 4.172 12 C 0.025 3.975 13 C -0.189 4.189 14 C -0.178 4.178 15 C -0.163 4.163 16 O -0.290 6.290 17 C 0.290 3.710 18 O -0.453 6.453 19 N -0.330 5.330 20 C -0.076 4.076 21 C 0.100 3.900 22 C -0.577 4.577 23 H 0.052 0.948 24 C -0.185 4.185 25 N -0.581 5.581 26 Si 0.768 3.232 27 H -0.203 1.203 28 H -0.199 1.199 29 H -0.162 1.162 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.170 0.830 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.075 0.925 49 H 0.039 0.961 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.849 12.730 28.510 32.194 hybrid contribution 0.010 -0.391 -1.130 1.196 sum 7.859 12.339 27.380 31.043 Atomic orbital electron populations 1.22138 0.90263 1.04006 1.05079 1.22461 0.97118 0.96974 0.81164 0.86405 1.86650 1.76994 1.42486 1.20153 1.24481 0.73609 0.85947 0.85833 1.90642 1.48628 1.17261 1.84435 1.21737 1.05803 0.99487 0.87259 1.22918 0.91234 0.89516 0.93578 0.91150 1.23024 1.01074 0.99845 0.94235 1.22774 1.00839 0.94974 0.98596 1.22899 0.97162 0.93145 0.84267 1.23364 0.97835 0.95637 1.02106 1.22813 0.96829 0.97809 1.00353 1.22977 0.95099 0.94856 1.03396 1.89031 1.51289 1.59527 1.29186 1.20632 0.78848 0.86343 0.85156 1.90642 1.47515 1.20768 1.86404 1.47833 1.65259 1.13820 1.06091 1.22181 1.01163 0.79440 1.04807 1.19458 0.95057 0.92696 0.82759 1.21511 0.94887 1.31692 1.09571 0.94755 1.25809 1.00876 0.94247 0.97570 1.70036 1.31461 1.34105 1.22533 0.85747 0.79463 0.80154 0.77803 1.20252 1.19886 1.16171 0.91843 0.88728 0.89066 0.85993 0.82959 0.89063 0.88091 0.89683 0.88423 0.92525 0.86940 0.92213 0.89689 0.86395 0.92021 0.90271 0.89864 0.89637 0.92527 0.96130 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.19 71.98 0.66 -3.91 16 2 C 0.08 2.75 2.14 29.85 0.06 2.81 16 3 H 0.12 3.60 6.31 -2.39 -0.02 3.58 16 4 O -0.35 -11.66 9.47 -45.25 -0.43 -12.08 16 5 C 0.46 12.78 7.86 71.24 0.56 13.34 16 6 O -0.52 -16.46 14.82 25.38 0.38 -16.08 16 7 C -0.11 -1.95 5.44 29.85 0.16 -1.79 16 8 C 0.09 1.49 2.75 31.12 0.09 1.58 16 9 H 0.07 1.34 7.91 -2.39 -0.02 1.32 16 10 C -0.14 -1.47 6.64 31.70 0.21 -1.26 16 11 C -0.13 -1.36 6.48 31.36 0.20 -1.16 16 12 C 0.06 1.04 1.13 -10.74 -0.01 1.03 16 13 C -0.15 -2.20 7.57 30.86 0.23 -1.97 16 14 C -0.14 -2.17 8.09 31.23 0.25 -1.91 16 15 C -0.13 -1.79 7.61 30.85 0.23 -1.56 16 16 O -0.37 -8.64 10.69 -142.35 -1.52 -10.16 16 17 C 0.50 21.99 6.95 87.66 0.61 22.60 16 18 O -0.57 -30.52 16.13 15.25 0.25 -30.27 16 19 N -0.60 -25.16 2.86 -851.13 -2.43 -27.59 16 20 C 0.07 1.97 9.79 127.77 1.25 3.22 16 21 C 0.22 10.96 4.25 85.63 0.36 11.32 16 22 C -0.54 -31.55 9.94 25.60 0.25 -31.30 16 23 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 24 C 0.01 0.79 5.47 84.65 0.46 1.26 16 25 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 26 Si 0.95 44.46 27.47 68.60 1.88 46.34 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 28 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 29 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 2.55 6.33 -2.39 -0.02 2.54 16 33 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 0.76 7.87 -2.39 -0.02 0.74 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 38 H 0.10 0.62 7.84 -2.39 -0.02 0.60 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.03 7.97 -2.39 -0.02 1.02 16 41 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.08 2.50 8.03 -2.38 -0.02 2.48 16 47 H 0.09 2.16 4.92 -2.39 -0.01 2.14 16 48 H 0.06 2.53 7.13 -2.39 -0.02 2.51 16 49 H 0.02 1.10 6.78 -2.39 -0.02 1.08 16 50 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -83.04 402.57 4.89 -78.15 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.87 Total: 18.28 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.60 Total: 12.31 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.13 Total: -86.48 kcal Atomic # 8 Polarization: -67.27 SS G_CDS: -1.33 Total: -68.60 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -83.04 4.89 -78.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885638312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.428 kcal (2) G-P(sol) polarization free energy of solvation -83.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds