Wall clock time and date at job start Tue Mar 31 2020 23:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47521 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00177 * 179.97438 * 16 15 13 18 18 O 1.20825 * 119.99906 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00019 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47065 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.27307 * 55.62297 * 20 19 17 22 22 C 1.54995 * 110.30251 * 177.80027 * 20 19 17 23 23 C 1.55432 * 101.01974 * 155.05382 * 22 20 19 24 24 C 1.53855 * 102.04757 * 326.32905 * 23 22 20 25 25 C 1.53187 * 114.62858 * 151.44941 * 24 23 22 26 26 C 1.53888 * 86.91751 * 90.96464 * 25 24 23 27 27 C 1.53210 * 114.59171 * 250.69423 * 24 23 22 28 28 O 1.42629 * 108.26629 * 21.02566 * 24 23 22 29 29 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 30 30 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 32 32 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 33 33 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 34 34 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 35 35 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.47054 * 299.99977 * 15 13 3 38 38 H 1.09003 * 109.47164 * 59.99309 * 15 13 3 39 39 H 1.09001 * 109.47170 * 300.00728 * 19 17 16 40 40 H 1.09003 * 109.46948 * 60.00423 * 19 17 16 41 41 H 1.09000 * 111.11008 * 272.98962 * 22 20 19 42 42 H 1.09000 * 111.11393 * 37.11582 * 22 20 19 43 43 H 1.08998 * 110.91870 * 208.14501 * 23 22 20 44 44 H 1.08997 * 110.94735 * 84.52764 * 23 22 20 45 45 H 1.09001 * 113.64007 * 205.46902 * 25 24 23 46 46 H 1.09002 * 113.64171 * 336.45525 * 25 24 23 47 47 H 1.08997 * 113.59287 * 270.43359 * 26 25 24 48 48 H 1.08997 * 113.59676 * 139.57639 * 26 25 24 49 49 H 1.08994 * 113.64059 * 23.51297 * 27 24 23 50 50 H 1.09005 * 113.63874 * 154.41116 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.8412 2.6205 2.3810 11 1 6.1615 2.7969 4.7024 12 1 6.1419 0.6405 3.5940 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 8 2.3053 2.1962 -3.5760 17 6 2.1342 1.7126 -4.8163 18 8 1.7348 0.5833 -4.9746 19 6 2.4392 2.5784 -6.0114 20 6 2.1609 1.7930 -7.2945 21 1 1.1354 1.4235 -7.2963 22 6 2.4157 2.6844 -8.5367 23 6 2.7253 1.6091 -9.6155 24 6 3.4386 0.5233 -8.7913 25 6 3.2771 -0.8998 -9.3346 26 6 4.5646 -0.6495 -10.1395 27 6 4.9392 0.3930 -9.0714 28 8 3.0859 0.6988 -7.4205 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5818 1.6876 2.0284 35 1 2.0957 3.1410 1.1384 36 1 3.6757 3.5166 4.4436 37 1 2.6211 0.4186 -2.5303 38 1 0.9431 1.0126 -2.5298 39 1 1.8092 3.4676 -5.9861 40 1 3.4877 2.8753 -5.9869 41 1 1.5261 3.2576 -8.7977 42 1 3.2715 3.3410 -8.3799 43 1 3.3849 2.0091 -10.3856 44 1 1.8061 1.2226 -10.0555 45 1 3.3810 -1.6728 -8.5732 46 1 2.3917 -1.0324 -9.9564 47 1 4.3863 -0.2196 -11.1251 48 1 5.2362 -1.5076 -10.1662 49 1 5.3874 1.2978 -9.4818 50 1 5.5056 -0.0191 -8.2361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885643430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:40 Heat of formation + Delta-G solvation = -148.017498 kcal Electronic energy + Delta-G solvation = -29760.060027 eV Core-core repulsion = 25560.272064 eV Total energy + Delta-G solvation = -4199.787963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96603 -40.28513 -38.90938 -37.06772 -36.12656 -35.26713 -32.84742 -32.75841 -31.32144 -30.15713 -29.06504 -26.73232 -26.10069 -25.77455 -23.22008 -23.05058 -22.65128 -21.92649 -20.54939 -19.24995 -18.63236 -17.74614 -17.28141 -16.64717 -16.53526 -16.36625 -16.20749 -15.75740 -15.37978 -15.20711 -14.82854 -14.48097 -14.16667 -13.87915 -13.50017 -13.43456 -13.19764 -12.97387 -12.66326 -12.50823 -12.42339 -12.31519 -12.08997 -12.03433 -11.93830 -11.69889 -11.59945 -11.35716 -11.30974 -11.21606 -10.94122 -10.92286 -10.83827 -10.64254 -10.57239 -10.48070 -10.41322 -10.13666 -9.66605 -9.61946 -8.96481 -8.43432 -7.73518 -6.04713 -4.09510 2.27188 2.52287 3.27896 3.33006 3.37005 3.40699 3.41466 3.89479 4.02850 4.16398 4.21225 4.39838 4.44725 4.46630 4.61153 4.66584 4.73753 4.91706 4.94763 5.04499 5.09158 5.18376 5.26528 5.29778 5.30839 5.32384 5.34988 5.41621 5.45455 5.47510 5.48209 5.56453 5.60795 5.67182 5.74649 5.75338 5.93650 5.99467 6.01944 6.20739 6.45409 6.48061 6.90988 7.01663 7.40908 7.49051 7.81215 7.91594 8.21720 8.31967 8.86259 9.01206 9.55378 11.03399 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.002134 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.917044 B =13115.229033 C =13648.040703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.051 3.949 16 O -0.332 6.332 17 C 0.460 3.540 18 O -0.501 6.501 19 C -0.113 4.113 20 C 0.092 3.908 21 H 0.081 0.919 22 C -0.151 4.151 23 C -0.129 4.129 24 C 0.080 3.920 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.140 4.140 28 O -0.347 6.347 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 -5.647 -27.555 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.396 6.396 15 C -0.027 4.027 16 O -0.248 6.248 17 C 0.303 3.697 18 O -0.388 6.388 19 C -0.151 4.151 20 C 0.034 3.966 21 H 0.099 0.901 22 C -0.189 4.189 23 C -0.166 4.166 24 C 0.040 3.960 25 C -0.178 4.178 26 C -0.178 4.178 27 C -0.177 4.177 28 O -0.266 6.266 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.988 -5.385 -27.188 28.002 hybrid contribution 0.833 -0.301 0.373 0.960 sum -3.156 -5.686 -26.816 27.593 Atomic orbital electron populations 1.22231 0.96555 1.01673 1.02382 1.21504 0.93740 0.83971 1.03029 1.48209 1.63852 1.13403 1.07154 1.19320 0.96439 0.93695 0.77593 1.21394 0.96858 1.32106 1.06356 0.92457 1.24932 0.97920 0.94867 0.96357 1.69920 1.35752 1.33314 1.14353 0.86544 0.84725 0.78258 0.77811 1.20138 1.21167 1.20241 1.19741 0.79647 0.87142 0.84336 1.90710 1.44538 1.17536 1.86779 1.22926 1.02567 0.92694 0.84465 1.86557 1.78779 1.44966 1.14461 1.23564 0.74545 0.87105 0.84525 1.90678 1.41928 1.19642 1.86546 1.21589 1.06227 0.98407 0.88879 1.22800 0.94612 0.86586 0.92565 0.90067 1.23341 1.03310 0.98070 0.94147 1.22831 1.01067 0.94823 0.97925 1.23175 0.95275 0.95255 0.82267 1.23316 0.98107 0.97115 0.99297 1.22703 0.97921 0.99588 0.97609 1.23299 0.95763 0.99583 0.99098 1.88527 1.62636 1.51158 1.24239 0.93150 0.91911 0.91801 0.91738 0.89440 0.94648 0.93728 0.92630 0.88768 0.88887 0.86213 0.86784 0.89399 0.89749 0.89713 0.90088 0.89177 0.91175 0.90084 0.90824 0.91097 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.59 -12.68 2.46 -175.06 -0.43 -13.11 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 5 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.51 11.00 7.75 -10.99 -0.09 10.91 16 14 O -0.52 -13.63 16.08 -14.11 -0.23 -13.86 16 15 C 0.05 0.87 4.50 36.00 0.16 1.03 16 16 O -0.33 -5.72 9.75 -45.88 -0.45 -6.17 16 17 C 0.46 6.72 7.86 36.01 0.28 7.00 16 18 O -0.50 -8.28 15.28 -23.44 -0.36 -8.64 16 19 C -0.11 -1.14 5.55 -27.88 -0.15 -1.30 16 20 C 0.09 0.88 2.93 -25.68 -0.08 0.81 16 21 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 22 C -0.15 -0.95 6.58 -24.39 -0.16 -1.11 16 23 C -0.13 -0.81 6.13 -24.99 -0.15 -0.97 16 24 C 0.08 0.71 1.65 -89.97 -0.15 0.56 16 25 C -0.14 -1.14 7.60 -26.17 -0.20 -1.34 16 26 C -0.14 -0.92 7.88 -25.81 -0.20 -1.13 16 27 C -0.14 -1.11 7.51 -26.16 -0.20 -1.31 16 28 O -0.35 -4.19 10.19 -47.07 -0.48 -4.67 16 29 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.90 6.44 -51.93 -0.33 0.56 16 33 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 34 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.49 7.39 -51.93 -0.38 1.11 16 38 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 39 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 43 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 44 H 0.08 0.46 8.00 -51.93 -0.42 0.04 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.49 8.00 -51.93 -0.42 0.08 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.48 8.00 -51.93 -0.42 0.07 16 50 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -35.84 409.13 -9.61 -45.45 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.53 Total: -1.91 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.02 Total: 5.60 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.31 Total: -38.96 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.51 Total: -33.33 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.84 -9.61 -45.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885643430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.564 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds