Wall clock time and date at job start Tue Mar 31 2020 23:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47521 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00177 * 179.97438 * 16 15 13 18 18 O 1.20825 * 119.99906 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00019 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47065 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.27307 * 55.62297 * 20 19 17 22 22 C 1.54995 * 110.30251 * 177.80027 * 20 19 17 23 23 C 1.55432 * 101.01974 * 155.05382 * 22 20 19 24 24 C 1.53855 * 102.04757 * 326.32905 * 23 22 20 25 25 C 1.53187 * 114.62858 * 151.44941 * 24 23 22 26 26 C 1.53888 * 86.91751 * 90.96464 * 25 24 23 27 27 C 1.53210 * 114.59171 * 250.69423 * 24 23 22 28 28 O 1.42629 * 108.26629 * 21.02566 * 24 23 22 29 29 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 30 30 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 32 32 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 33 33 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 34 34 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 35 35 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.47054 * 299.99977 * 15 13 3 38 38 H 1.09003 * 109.47164 * 59.99309 * 15 13 3 39 39 H 1.09001 * 109.47170 * 300.00728 * 19 17 16 40 40 H 1.09003 * 109.46948 * 60.00423 * 19 17 16 41 41 H 1.09000 * 111.11008 * 272.98962 * 22 20 19 42 42 H 1.09000 * 111.11393 * 37.11582 * 22 20 19 43 43 H 1.08998 * 110.91870 * 208.14501 * 23 22 20 44 44 H 1.08997 * 110.94735 * 84.52764 * 23 22 20 45 45 H 1.09001 * 113.64007 * 205.46902 * 25 24 23 46 46 H 1.09002 * 113.64171 * 336.45525 * 25 24 23 47 47 H 1.08997 * 113.59287 * 270.43359 * 26 25 24 48 48 H 1.08997 * 113.59676 * 139.57639 * 26 25 24 49 49 H 1.08994 * 113.64059 * 23.51297 * 27 24 23 50 50 H 1.09005 * 113.63874 * 154.41116 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.8412 2.6205 2.3810 11 1 6.1615 2.7969 4.7024 12 1 6.1419 0.6405 3.5940 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 8 2.3053 2.1962 -3.5760 17 6 2.1342 1.7126 -4.8163 18 8 1.7348 0.5833 -4.9746 19 6 2.4392 2.5784 -6.0114 20 6 2.1609 1.7930 -7.2945 21 1 1.1354 1.4235 -7.2963 22 6 2.4157 2.6844 -8.5367 23 6 2.7253 1.6091 -9.6155 24 6 3.4386 0.5233 -8.7913 25 6 3.2771 -0.8998 -9.3346 26 6 4.5646 -0.6495 -10.1395 27 6 4.9392 0.3930 -9.0714 28 8 3.0859 0.6988 -7.4205 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5818 1.6876 2.0284 35 1 2.0957 3.1410 1.1384 36 1 3.6757 3.5166 4.4436 37 1 2.6211 0.4186 -2.5303 38 1 0.9431 1.0126 -2.5298 39 1 1.8092 3.4676 -5.9861 40 1 3.4877 2.8753 -5.9869 41 1 1.5261 3.2576 -8.7977 42 1 3.2715 3.3410 -8.3799 43 1 3.3849 2.0091 -10.3856 44 1 1.8061 1.2226 -10.0555 45 1 3.3810 -1.6728 -8.5732 46 1 2.3917 -1.0324 -9.9564 47 1 4.3863 -0.2196 -11.1251 48 1 5.2362 -1.5076 -10.1662 49 1 5.3874 1.2978 -9.4818 50 1 5.5056 -0.0191 -8.2361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885643430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:39 Heat of formation + Delta-G solvation = -168.758602 kcal Electronic energy + Delta-G solvation = -29760.959429 eV Core-core repulsion = 25560.272064 eV Total energy + Delta-G solvation = -4200.687364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89171 -41.28867 -40.52049 -37.94529 -37.26302 -36.95216 -34.95099 -33.48331 -32.09558 -31.71270 -30.54913 -28.46383 -26.72044 -26.64005 -24.90606 -24.21604 -23.68043 -22.75920 -21.53399 -20.27844 -19.86831 -18.93655 -18.63848 -18.21757 -17.95784 -17.55644 -17.36164 -16.90246 -16.76467 -16.24763 -15.97718 -15.86768 -15.33796 -14.91110 -14.80181 -14.53642 -14.39181 -14.08507 -13.93431 -13.63468 -13.61159 -13.31764 -13.27697 -13.09928 -13.06871 -12.95319 -12.67511 -12.60367 -12.53297 -12.31731 -12.22743 -12.05879 -11.95032 -11.82853 -11.80560 -11.73876 -11.58330 -11.49396 -11.19400 -10.74582 -10.65274 -10.31276 -9.56550 -8.24143 -6.38681 1.14017 1.28679 1.36505 1.40563 1.47857 1.59800 2.31570 2.44391 2.77900 3.05708 3.41279 3.46135 3.59478 3.60560 3.65708 3.83327 3.90465 3.91839 3.95191 4.01987 4.10138 4.12988 4.33832 4.35786 4.45866 4.51505 4.56484 4.60217 4.80839 4.82616 4.87075 4.88389 4.92008 4.92341 5.00824 5.01096 5.05175 5.05654 5.17478 5.21693 5.31603 5.33901 5.35463 5.44019 5.52676 5.78307 6.03059 6.26105 6.54412 6.68150 6.69965 7.19324 7.35086 8.83120 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.002134 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.917044 B =13115.229033 C =13648.040703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.277 1.277 12 H -0.261 1.261 13 C 0.500 3.500 14 O -0.577 6.577 15 C 0.063 3.937 16 O -0.353 6.353 17 C 0.458 3.542 18 O -0.523 6.523 19 C -0.109 4.109 20 C 0.086 3.914 21 H 0.072 0.928 22 C -0.142 4.142 23 C -0.124 4.124 24 C 0.066 3.934 25 C -0.148 4.148 26 C -0.128 4.128 27 C -0.144 4.144 28 O -0.384 6.384 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.000 1.000 36 H 0.268 0.732 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -6.411 -29.866 30.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.185 1.185 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.014 4.014 16 O -0.269 6.269 17 C 0.303 3.697 18 O -0.411 6.411 19 C -0.147 4.147 20 C 0.029 3.971 21 H 0.090 0.910 22 C -0.179 4.179 23 C -0.161 4.161 24 C 0.027 3.973 25 C -0.186 4.186 26 C -0.166 4.166 27 C -0.182 4.182 28 O -0.303 6.303 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.168 0.832 40 H 0.140 0.860 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.120 0.880 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.817 -6.204 -29.519 30.404 hybrid contribution 0.728 -0.104 1.085 1.311 sum -3.089 -6.308 -28.434 29.288 Atomic orbital electron populations 1.22169 0.94210 1.03784 1.01883 1.21852 0.95654 0.81031 1.04263 1.48213 1.63583 1.15220 1.05734 1.18795 0.95590 0.91684 0.79704 1.21663 0.97814 1.32326 1.06690 0.92905 1.25848 1.02434 0.94406 0.96369 1.70036 1.37788 1.33962 1.14776 0.85472 0.78960 0.79022 0.77383 1.20390 1.20184 1.18505 1.20542 0.78311 0.86648 0.85825 1.90671 1.47130 1.20117 1.87762 1.22751 1.04404 0.92011 0.82211 1.86577 1.79298 1.45591 1.15408 1.24468 0.73521 0.87416 0.84337 1.90661 1.43107 1.20780 1.86564 1.21822 1.07234 0.98693 0.86904 1.22923 0.93782 0.86816 0.93582 0.90975 1.23345 1.04679 0.97713 0.92167 1.22863 1.01494 0.93826 0.97920 1.23502 0.95922 0.96262 0.81603 1.23334 0.99538 0.96461 0.99272 1.22698 0.96685 0.99225 0.97943 1.23298 0.95312 1.00555 0.99001 1.88494 1.63200 1.52305 1.26332 0.92462 0.88419 0.93516 0.88739 0.89959 0.95169 0.98157 0.92303 0.87213 0.86219 0.83239 0.86045 0.87152 0.88957 0.87812 0.89311 0.91419 0.90148 0.87958 0.90663 0.89722 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.24 71.98 0.74 -3.40 16 2 C 0.09 2.95 5.93 86.38 0.51 3.46 16 3 N -0.60 -25.93 2.46 -826.16 -2.03 -27.96 16 4 C 0.26 14.35 5.16 85.63 0.44 14.79 16 5 C -0.55 -31.89 9.39 25.60 0.24 -31.65 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 9 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.50 22.11 7.75 87.66 0.68 22.79 16 14 O -0.58 -31.57 16.08 15.75 0.25 -31.31 16 15 C 0.06 2.10 4.50 71.24 0.32 2.42 16 16 O -0.35 -12.01 9.75 -45.00 -0.44 -12.45 16 17 C 0.46 13.04 7.86 71.24 0.56 13.60 16 18 O -0.52 -16.94 15.28 26.45 0.40 -16.54 16 19 C -0.11 -2.05 5.55 29.85 0.17 -1.88 16 20 C 0.09 1.53 2.93 31.28 0.09 1.62 16 21 H 0.07 1.37 8.00 -2.39 -0.02 1.35 16 22 C -0.14 -1.38 6.58 32.11 0.21 -1.17 16 23 C -0.12 -1.22 6.13 31.72 0.19 -1.02 16 24 C 0.07 1.10 1.65 -10.37 -0.02 1.08 16 25 C -0.15 -2.32 7.60 30.96 0.24 -2.08 16 26 C -0.13 -1.48 7.88 31.19 0.25 -1.23 16 27 C -0.14 -2.14 7.51 30.96 0.23 -1.91 16 28 O -0.38 -9.11 10.19 -137.66 -1.40 -10.51 16 29 H 0.06 1.38 7.22 -2.38 -0.02 1.36 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 2.41 6.44 -2.39 -0.02 2.40 16 33 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 34 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 35 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.11 3.31 7.39 -2.38 -0.02 3.30 16 38 H 0.12 3.33 7.18 -2.39 -0.02 3.31 16 39 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 0.77 8.05 -2.39 -0.02 0.76 16 43 H 0.10 0.64 7.85 -2.39 -0.02 0.62 16 44 H 0.09 0.74 8.00 -2.39 -0.02 0.72 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 1.04 8.00 -2.39 -0.02 1.02 16 47 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 0.99 8.00 -2.39 -0.02 0.97 16 50 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -81.80 409.13 5.33 -76.48 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.91 Total: 14.51 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 5.31 Total: 16.38 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.74 Total: -83.93 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -1.18 Total: -70.82 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -81.80 5.33 -76.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885643430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.281 kcal (2) G-P(sol) polarization free energy of solvation -81.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds