Wall clock time and date at job start Tue Mar 31 2020 23:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46818 * 2 1 4 4 C 1.46500 * 120.00459 * 270.00207 * 3 2 1 5 5 C 1.50706 * 109.46997 * 270.00048 * 4 3 2 6 6 H 1.08001 * 119.99891 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99982 * 179.97438 * 5 4 3 8 8 N 1.31526 * 119.99798 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46893 * 60.00064 * 9 7 5 11 11 H 1.48503 * 109.47081 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47055 * 300.00121 * 9 7 5 13 13 C 1.34777 * 119.99737 * 90.00077 * 3 2 1 14 14 O 1.21281 * 119.99955 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00300 * 0.02562 * 13 3 2 16 16 O 1.45194 * 109.47744 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00694 * 179.97438 * 16 15 13 18 18 O 1.20825 * 119.99369 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00194 * 179.97438 * 17 16 15 20 20 C 1.53006 * 109.47105 * 180.02562 * 19 17 16 21 21 H 1.08994 * 109.82434 * 305.57044 * 20 19 17 22 22 C 1.54449 * 109.83374 * 184.58001 * 20 19 17 23 23 C 1.55460 * 102.36164 * 219.13569 * 22 20 19 24 24 C 1.54089 * 100.79974 * 33.19907 * 23 22 20 25 25 C 1.52878 * 115.02152 * 94.64030 * 24 23 22 26 26 C 1.53946 * 86.80951 * 91.88778 * 25 24 23 27 27 C 1.52866 * 115.04098 * 194.76482 * 24 23 22 28 28 O 1.42643 * 106.36266 * 324.72662 * 24 23 22 29 29 H 1.09003 * 109.46845 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47350 * 299.99268 * 1 2 3 31 31 H 1.09000 * 109.47337 * 60.00165 * 1 2 3 32 32 H 1.09001 * 109.47350 * 240.00732 * 2 1 3 33 33 H 1.09000 * 109.47337 * 119.99835 * 2 1 3 34 34 H 1.09002 * 109.47077 * 30.00003 * 4 3 2 35 35 H 1.08998 * 109.47203 * 149.99864 * 4 3 2 36 36 H 0.96997 * 119.99494 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47258 * 59.99550 * 15 13 3 38 38 H 1.09007 * 109.47167 * 299.99872 * 15 13 3 39 39 H 1.08999 * 109.47048 * 60.00962 * 19 17 16 40 40 H 1.08994 * 109.47643 * 300.00419 * 19 17 16 41 41 H 1.08999 * 110.82768 * 337.35049 * 22 20 19 42 42 H 1.09002 * 110.82856 * 100.91145 * 22 20 19 43 43 H 1.09006 * 111.14815 * 275.31978 * 23 22 20 44 44 H 1.09001 * 111.19284 * 151.10410 * 23 22 20 45 45 H 1.09002 * 113.65645 * 206.36436 * 25 24 23 46 46 H 1.08993 * 113.66057 * 337.40540 * 25 24 23 47 47 H 1.09006 * 113.58871 * 270.16765 * 26 25 24 48 48 H 1.08997 * 113.66169 * 139.36155 * 26 25 24 49 49 H 1.09001 * 113.66048 * 22.60932 * 27 24 23 50 50 H 1.08994 * 113.66223 * 153.55799 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7037 6 1 4.3428 1.2311 -1.0958 7 6 4.1490 2.3900 -2.8779 8 7 3.3485 3.1253 -3.6185 9 14 5.9134 2.0972 -3.4168 10 1 6.1417 0.6405 -3.5937 11 1 6.1608 2.7972 -4.7029 12 1 6.8405 2.6214 -2.3821 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9923 1.3060 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1362 1.7116 4.8164 18 8 1.7371 0.5822 4.9746 19 6 2.4432 2.5767 6.0115 20 6 2.1659 1.7908 7.2947 21 1 1.1456 1.4077 7.2803 22 6 2.3673 2.7052 8.5230 23 6 3.0504 1.7493 9.5411 24 6 3.8740 0.8575 8.5920 25 6 5.3234 1.2980 8.3861 26 6 5.6826 0.3662 9.5577 27 6 4.4102 -0.4304 9.2169 28 8 3.0932 0.7017 7.4084 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5815 1.6879 -2.0284 35 1 2.0953 3.1412 -1.1383 36 1 3.6746 3.5158 -4.4443 37 1 2.6228 0.4187 2.5298 38 1 0.9444 1.0113 2.5303 39 1 1.8142 3.4665 5.9870 40 1 3.4920 2.8722 5.9864 41 1 3.0206 3.5430 8.2796 42 1 1.4092 3.0577 8.9050 43 1 2.3112 1.1640 10.0881 44 1 3.6974 2.2989 10.2247 45 1 5.7449 0.9829 7.4316 46 1 5.4942 2.3534 8.5983 47 1 5.6438 0.8548 10.5314 48 1 6.6036 -0.1958 9.4031 49 1 3.8508 -0.7571 10.0935 50 1 4.5738 -1.2313 8.4960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885643431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:43 Heat of formation + Delta-G solvation = -147.968691 kcal Electronic energy + Delta-G solvation = -29884.547384 eV Core-core repulsion = 25684.761538 eV Total energy + Delta-G solvation = -4199.785846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04189 -40.27843 -38.90571 -37.05497 -36.11584 -35.26680 -32.85076 -32.77427 -31.28862 -30.15603 -29.06649 -26.76696 -26.13856 -25.78780 -23.28567 -23.05652 -22.64345 -21.85329 -20.56422 -19.24538 -18.62801 -17.70877 -17.20035 -16.64106 -16.52681 -16.45453 -16.22507 -15.74340 -15.50278 -15.22168 -14.77399 -14.49984 -14.13130 -13.86502 -13.50431 -13.42615 -13.15817 -12.97048 -12.68919 -12.50589 -12.35614 -12.33166 -12.09496 -12.03392 -11.92397 -11.75020 -11.59722 -11.40534 -11.32266 -11.21656 -10.94127 -10.90254 -10.83701 -10.61228 -10.57197 -10.47648 -10.40018 -10.13826 -9.66781 -9.65619 -8.96426 -8.43513 -7.73552 -6.04861 -4.09698 2.28229 2.53328 3.27873 3.32779 3.36843 3.41168 3.43649 3.89959 4.01267 4.19901 4.21935 4.35508 4.44442 4.44671 4.61767 4.66131 4.78000 4.92113 4.96273 5.03331 5.09821 5.17856 5.26743 5.29662 5.31115 5.32132 5.34934 5.41853 5.44051 5.46360 5.47441 5.56625 5.60919 5.67055 5.75339 5.76429 5.92741 6.01329 6.02055 6.20837 6.45762 6.48916 6.91508 7.01678 7.40787 7.48994 7.82299 7.91520 8.21551 8.31953 8.86160 9.01131 9.55220 11.03269 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.002246 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.637913 B =12464.702620 C =13302.570347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.051 3.949 16 O -0.333 6.333 17 C 0.461 3.539 18 O -0.500 6.500 19 C -0.124 4.124 20 C 0.093 3.907 21 H 0.090 0.910 22 C -0.150 4.150 23 C -0.129 4.129 24 C 0.077 3.923 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.128 4.128 28 O -0.344 6.344 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -4.916 27.218 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.396 6.396 15 C -0.027 4.027 16 O -0.248 6.248 17 C 0.303 3.697 18 O -0.388 6.388 19 C -0.162 4.162 20 C 0.035 3.965 21 H 0.108 0.892 22 C -0.187 4.187 23 C -0.167 4.167 24 C 0.038 3.962 25 C -0.189 4.189 26 C -0.177 4.177 27 C -0.166 4.166 28 O -0.262 6.262 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.939 -4.698 26.873 27.439 hybrid contribution 0.887 -0.198 -0.443 1.011 sum -2.052 -4.896 26.431 26.958 Atomic orbital electron populations 1.22230 0.96551 1.01680 1.02380 1.21506 0.93746 0.83965 1.03028 1.48211 1.63865 1.13398 1.07154 1.19320 0.96437 0.93689 0.77600 1.21395 0.96865 1.32123 1.06330 0.92459 1.24933 0.97916 0.94872 0.96343 1.69926 1.35733 1.33350 1.14350 0.86543 0.84722 0.78260 0.77814 1.20233 1.21160 1.20146 1.19742 0.79642 0.87138 0.84339 1.90708 1.44518 1.17569 1.86782 1.22923 1.02566 0.92695 0.84480 1.86558 1.78769 1.45010 1.14483 1.23568 0.74530 0.87097 0.84489 1.90676 1.41944 1.19615 1.86542 1.21857 1.05936 0.98713 0.89704 1.22592 0.94771 0.86986 0.92188 0.89198 1.23199 1.02334 0.98609 0.94597 1.22910 0.99105 0.97183 0.97454 1.23188 0.90745 0.96617 0.85698 1.23364 0.95858 0.99993 0.99669 1.22730 0.98122 0.98488 0.98394 1.23045 0.96397 0.96763 1.00381 1.88522 1.50348 1.44906 1.42465 0.91907 0.93141 0.91807 0.89440 0.91734 0.94645 0.93735 0.92629 0.88791 0.88888 0.86520 0.87093 0.89864 0.89467 0.89948 0.89652 0.89161 0.91083 0.90050 0.90766 0.90907 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.59 -12.70 2.46 -175.06 -0.43 -13.13 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.47 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.51 11.02 7.75 -10.99 -0.09 10.94 16 14 O -0.52 -13.66 16.08 -14.10 -0.23 -13.89 16 15 C 0.05 0.87 4.50 36.00 0.16 1.03 16 16 O -0.33 -5.76 9.75 -45.90 -0.45 -6.21 16 17 C 0.46 6.77 7.85 36.00 0.28 7.05 16 18 O -0.50 -8.32 15.24 -23.57 -0.36 -8.68 16 19 C -0.12 -1.27 5.39 -27.88 -0.15 -1.42 16 20 C 0.09 0.88 3.06 -25.97 -0.08 0.81 16 21 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 22 C -0.15 -0.93 6.55 -24.66 -0.16 -1.09 16 23 C -0.13 -0.81 6.21 -24.86 -0.15 -0.96 16 24 C 0.08 0.67 1.44 -90.19 -0.13 0.54 16 25 C -0.15 -1.21 7.58 -26.30 -0.20 -1.41 16 26 C -0.14 -0.92 7.90 -25.75 -0.20 -1.12 16 27 C -0.13 -1.01 7.64 -26.31 -0.20 -1.21 16 28 O -0.34 -4.13 10.17 -47.62 -0.48 -4.62 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.45 8.07 -51.93 -0.42 1.04 16 33 H 0.06 0.90 6.44 -51.93 -0.33 0.57 16 34 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.49 7.39 -51.93 -0.38 1.11 16 38 H 0.09 1.39 7.18 -51.92 -0.37 1.01 16 39 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.41 8.04 -51.93 -0.42 0.00 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.49 8.11 -51.93 -0.42 0.06 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 409.29 15.07 6.17 6.17 Total: -1.00 -35.85 409.29 -9.62 -45.47 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.54 Total: -1.80 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -1.01 Total: 5.60 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.31 Total: -39.00 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.52 Total: -33.39 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.85 -9.62 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885643431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.504 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds