Wall clock time and date at job start Tue Mar 31 2020 23:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46818 * 2 1 4 4 C 1.46500 * 120.00459 * 270.00207 * 3 2 1 5 5 C 1.50706 * 109.46997 * 270.00048 * 4 3 2 6 6 H 1.08001 * 119.99891 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99982 * 179.97438 * 5 4 3 8 8 N 1.31526 * 119.99798 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46893 * 60.00064 * 9 7 5 11 11 H 1.48503 * 109.47081 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47055 * 300.00121 * 9 7 5 13 13 C 1.34777 * 119.99737 * 90.00077 * 3 2 1 14 14 O 1.21281 * 119.99955 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00300 * 0.02562 * 13 3 2 16 16 O 1.45194 * 109.47744 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00694 * 179.97438 * 16 15 13 18 18 O 1.20825 * 119.99369 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00194 * 179.97438 * 17 16 15 20 20 C 1.53006 * 109.47105 * 180.02562 * 19 17 16 21 21 H 1.08994 * 109.82434 * 305.57044 * 20 19 17 22 22 C 1.54449 * 109.83374 * 184.58001 * 20 19 17 23 23 C 1.55460 * 102.36164 * 219.13569 * 22 20 19 24 24 C 1.54089 * 100.79974 * 33.19907 * 23 22 20 25 25 C 1.52878 * 115.02152 * 94.64030 * 24 23 22 26 26 C 1.53946 * 86.80951 * 91.88778 * 25 24 23 27 27 C 1.52866 * 115.04098 * 194.76482 * 24 23 22 28 28 O 1.42643 * 106.36266 * 324.72662 * 24 23 22 29 29 H 1.09003 * 109.46845 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47350 * 299.99268 * 1 2 3 31 31 H 1.09000 * 109.47337 * 60.00165 * 1 2 3 32 32 H 1.09001 * 109.47350 * 240.00732 * 2 1 3 33 33 H 1.09000 * 109.47337 * 119.99835 * 2 1 3 34 34 H 1.09002 * 109.47077 * 30.00003 * 4 3 2 35 35 H 1.08998 * 109.47203 * 149.99864 * 4 3 2 36 36 H 0.96997 * 119.99494 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47258 * 59.99550 * 15 13 3 38 38 H 1.09007 * 109.47167 * 299.99872 * 15 13 3 39 39 H 1.08999 * 109.47048 * 60.00962 * 19 17 16 40 40 H 1.08994 * 109.47643 * 300.00419 * 19 17 16 41 41 H 1.08999 * 110.82768 * 337.35049 * 22 20 19 42 42 H 1.09002 * 110.82856 * 100.91145 * 22 20 19 43 43 H 1.09006 * 111.14815 * 275.31978 * 23 22 20 44 44 H 1.09001 * 111.19284 * 151.10410 * 23 22 20 45 45 H 1.09002 * 113.65645 * 206.36436 * 25 24 23 46 46 H 1.08993 * 113.66057 * 337.40540 * 25 24 23 47 47 H 1.09006 * 113.58871 * 270.16765 * 26 25 24 48 48 H 1.08997 * 113.66169 * 139.36155 * 26 25 24 49 49 H 1.09001 * 113.66048 * 22.60932 * 27 24 23 50 50 H 1.08994 * 113.66223 * 153.55799 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7037 6 1 4.3428 1.2311 -1.0958 7 6 4.1490 2.3900 -2.8779 8 7 3.3485 3.1253 -3.6185 9 14 5.9134 2.0972 -3.4168 10 1 6.1417 0.6405 -3.5937 11 1 6.1608 2.7972 -4.7029 12 1 6.8405 2.6214 -2.3821 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9923 1.3060 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1362 1.7116 4.8164 18 8 1.7371 0.5822 4.9746 19 6 2.4432 2.5767 6.0115 20 6 2.1659 1.7908 7.2947 21 1 1.1456 1.4077 7.2803 22 6 2.3673 2.7052 8.5230 23 6 3.0504 1.7493 9.5411 24 6 3.8740 0.8575 8.5920 25 6 5.3234 1.2980 8.3861 26 6 5.6826 0.3662 9.5577 27 6 4.4102 -0.4304 9.2169 28 8 3.0932 0.7017 7.4084 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5815 1.6879 -2.0284 35 1 2.0953 3.1412 -1.1383 36 1 3.6746 3.5158 -4.4443 37 1 2.6228 0.4187 2.5298 38 1 0.9444 1.0113 2.5303 39 1 1.8142 3.4665 5.9870 40 1 3.4920 2.8722 5.9864 41 1 3.0206 3.5430 8.2796 42 1 1.4092 3.0577 8.9050 43 1 2.3112 1.1640 10.0881 44 1 3.6974 2.2989 10.2247 45 1 5.7449 0.9829 7.4316 46 1 5.4942 2.3534 8.5983 47 1 5.6438 0.8548 10.5314 48 1 6.6036 -0.1958 9.4031 49 1 3.8508 -0.7571 10.0935 50 1 4.5738 -1.2313 8.4960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885643431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:42 Heat of formation + Delta-G solvation = -168.682092 kcal Electronic energy + Delta-G solvation = -29885.445584 eV Core-core repulsion = 25684.761538 eV Total energy + Delta-G solvation = -4200.684047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93145 -41.32823 -40.52000 -37.93738 -37.25549 -36.95378 -34.95210 -33.50172 -32.07328 -31.71060 -30.55147 -28.47382 -26.85762 -26.57973 -24.91233 -24.22508 -23.74609 -22.68582 -21.53986 -20.28611 -19.86113 -18.91773 -18.64125 -18.18919 -17.94564 -17.48330 -17.36729 -17.03173 -16.74409 -16.26223 -16.00792 -15.96230 -15.31108 -14.89694 -14.81414 -14.53664 -14.35701 -14.05183 -13.92141 -13.63075 -13.61944 -13.31896 -13.28558 -13.10042 -13.03888 -12.94960 -12.67732 -12.61559 -12.53491 -12.33861 -12.22985 -12.06136 -11.95087 -11.89282 -11.80914 -11.74169 -11.58674 -11.44967 -11.16360 -10.75073 -10.65425 -10.35131 -9.56917 -8.24381 -6.39011 1.14011 1.28805 1.36319 1.40479 1.47733 1.59352 2.31406 2.44171 2.81880 3.05485 3.40397 3.43922 3.59524 3.63480 3.67523 3.78898 3.89038 3.91350 3.94754 4.04981 4.10655 4.12625 4.33991 4.35580 4.45304 4.52503 4.56229 4.60035 4.80531 4.81867 4.86860 4.87941 4.92107 4.92541 4.98641 5.00807 5.05138 5.08629 5.17089 5.21656 5.31242 5.33593 5.35539 5.46690 5.52387 5.78040 6.02735 6.26753 6.54163 6.68182 6.69656 7.18955 7.34782 8.82935 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.002246 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.637913 B =12464.702620 C =13302.570347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.500 3.500 14 O -0.577 6.577 15 C 0.063 3.937 16 O -0.353 6.353 17 C 0.459 3.541 18 O -0.522 6.522 19 C -0.120 4.120 20 C 0.088 3.912 21 H 0.081 0.919 22 C -0.141 4.141 23 C -0.123 4.123 24 C 0.065 3.935 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.135 4.135 28 O -0.380 6.380 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.000 1.000 36 H 0.268 0.732 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -5.633 29.497 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.014 4.014 16 O -0.270 6.270 17 C 0.303 3.697 18 O -0.411 6.411 19 C -0.157 4.157 20 C 0.030 3.970 21 H 0.098 0.902 22 C -0.179 4.179 23 C -0.160 4.160 24 C 0.025 3.975 25 C -0.193 4.193 26 C -0.165 4.165 27 C -0.173 4.173 28 O -0.300 6.300 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.136 0.864 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.121 0.879 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.667 -5.470 29.171 29.799 hybrid contribution 0.754 -0.016 -1.145 1.371 sum -1.912 -5.486 28.026 28.622 Atomic orbital electron populations 1.22169 0.94206 1.03794 1.01878 1.21856 0.95661 0.81022 1.04267 1.48216 1.63591 1.15216 1.05732 1.18795 0.95598 0.91670 0.79701 1.21666 0.97818 1.32363 1.06679 0.92901 1.25848 1.02436 0.94393 0.96341 1.70042 1.37781 1.33997 1.14776 0.85470 0.78944 0.79031 0.77390 1.18490 1.20172 1.20387 1.20538 0.78309 0.86642 0.85821 1.90669 1.47113 1.20150 1.87763 1.22750 1.04401 0.92014 0.82229 1.86578 1.79288 1.45651 1.15437 1.24467 0.73518 0.87411 0.84296 1.90658 1.43105 1.20733 1.86558 1.22084 1.06852 0.99006 0.87800 1.22711 0.93906 0.87213 0.93164 0.90155 1.23211 1.03730 0.98141 0.92777 1.22934 0.99086 0.96817 0.97199 1.23502 0.90955 0.97471 0.85541 1.23350 0.95681 1.01044 0.99252 1.22729 0.97379 0.97694 0.98746 1.23075 0.97547 0.96306 1.00357 1.88489 1.51148 1.46243 1.44120 0.88407 0.92467 0.93516 0.89944 0.88740 0.95166 0.98174 0.92296 0.87231 0.86226 0.83666 0.86433 0.88680 0.87441 0.89502 0.87594 0.91475 0.89750 0.87887 0.90726 0.89685 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 10.24 71.98 0.74 -3.42 16 2 C 0.09 2.96 5.93 86.38 0.51 3.47 16 3 N -0.60 -25.98 2.46 -826.15 -2.03 -28.01 16 4 C 0.26 14.37 5.16 85.63 0.44 14.81 16 5 C -0.55 -31.93 9.39 25.60 0.24 -31.69 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 9 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.50 22.17 7.75 87.66 0.68 22.85 16 14 O -0.58 -31.65 16.08 15.76 0.25 -31.39 16 15 C 0.06 2.11 4.50 71.23 0.32 2.43 16 16 O -0.35 -12.13 9.75 -45.05 -0.44 -12.57 16 17 C 0.46 13.17 7.85 71.23 0.56 13.73 16 18 O -0.52 -17.02 15.24 26.58 0.40 -16.61 16 19 C -0.12 -2.28 5.39 29.85 0.16 -2.12 16 20 C 0.09 1.55 3.06 31.09 0.10 1.65 16 21 H 0.08 1.54 7.95 -2.39 -0.02 1.52 16 22 C -0.14 -1.35 6.55 31.93 0.21 -1.14 16 23 C -0.12 -1.20 6.21 31.81 0.20 -1.01 16 24 C 0.06 1.05 1.44 -10.52 -0.02 1.03 16 25 C -0.16 -2.34 7.58 30.87 0.23 -2.10 16 26 C -0.13 -1.47 7.90 31.23 0.25 -1.22 16 27 C -0.14 -2.03 7.64 30.87 0.24 -1.79 16 28 O -0.38 -9.00 10.17 -137.13 -1.39 -10.39 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.68 8.07 -2.39 -0.02 2.67 16 33 H 0.09 2.42 6.44 -2.39 -0.02 2.41 16 34 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 35 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.11 3.33 7.39 -2.38 -0.02 3.31 16 38 H 0.12 3.35 7.18 -2.38 -0.02 3.33 16 39 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 0.70 7.85 -2.39 -0.02 0.69 16 42 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.11 0.61 8.04 -2.39 -0.02 0.60 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.00 8.11 -2.39 -0.02 0.98 16 47 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.02 8.11 -2.39 -0.02 1.00 16 50 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -81.76 409.29 5.34 -76.42 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.91 Total: 14.75 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 5.32 Total: 16.47 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.74 Total: -84.03 kcal Atomic # 8 Polarization: -69.80 SS G_CDS: -1.18 Total: -70.97 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -81.76 5.34 -76.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885643431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.258 kcal (2) G-P(sol) polarization free energy of solvation -81.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds