Wall clock time and date at job start Tue Mar 31 2020 22:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47256 * 2 1 4 4 O 1.45198 * 109.46990 * 120.00543 * 2 1 3 5 5 C 1.34231 * 116.99587 * 269.99472 * 4 2 1 6 6 O 1.20821 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99941 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.55025 * 59.79719 * 7 5 4 9 9 C 1.53153 * 109.55254 * 299.49125 * 7 5 4 10 10 C 1.53048 * 109.40521 * 181.52406 * 9 7 5 11 11 O 1.43047 * 109.44558 * 59.32817 * 10 9 7 12 12 C 1.42584 * 113.84088 * 301.26986 * 11 10 9 13 13 C 1.53398 * 113.62133 * 188.22215 * 12 11 10 14 14 C 1.53857 * 86.98462 * 89.43851 * 13 12 11 15 15 C 1.53431 * 113.56701 * 286.14209 * 12 11 10 16 16 C 1.52807 * 112.94052 * 57.10819 * 12 11 10 17 17 C 1.50703 * 109.47055 * 240.00083 * 2 1 3 18 18 O 1.21278 * 120.00313 * 255.41552 * 17 2 1 19 19 N 1.34784 * 119.99984 * 75.69016 * 17 2 1 20 20 C 1.46498 * 119.99788 * 5.07364 * 19 17 2 21 21 C 1.46498 * 120.00222 * 185.07486 * 19 17 2 22 22 C 1.50697 * 109.47170 * 89.99590 * 21 19 17 23 23 H 1.08001 * 119.99875 * 0.02562 * 22 21 19 24 24 C 1.37880 * 120.00022 * 179.97438 * 22 21 19 25 25 N 1.31514 * 119.99710 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99942 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47086 * 90.00375 * 26 24 22 28 28 H 1.48504 * 109.46960 * 210.00346 * 26 24 22 29 29 H 1.48496 * 109.47253 * 330.00192 * 26 24 22 30 30 H 1.09000 * 109.47446 * 65.10029 * 1 2 3 31 31 H 1.09006 * 109.47138 * 185.09884 * 1 2 3 32 32 H 1.08995 * 109.47093 * 305.09773 * 1 2 3 33 33 H 1.09003 * 109.48243 * 301.50365 * 9 7 5 34 34 H 1.08996 * 109.48381 * 61.54536 * 9 7 5 35 35 H 1.08998 * 109.47976 * 299.33463 * 10 9 7 36 36 H 1.09007 * 109.47912 * 179.31596 * 10 9 7 37 37 H 1.09004 * 113.62685 * 203.95770 * 13 12 11 38 38 H 1.08990 * 113.63024 * 334.91438 * 13 12 11 39 39 H 1.09003 * 113.60267 * 270.60183 * 14 13 12 40 40 H 1.08995 * 113.68169 * 139.73523 * 14 13 12 41 41 H 1.09002 * 113.63243 * 25.03136 * 15 12 11 42 42 H 1.09001 * 113.62903 * 155.90288 * 15 12 11 43 43 H 1.08996 * 109.56690 * 186.21487 * 16 12 11 44 44 H 1.09003 * 109.65730 * 65.93114 * 16 12 11 45 45 H 1.09000 * 109.47256 * 84.89455 * 20 19 17 46 46 H 1.09000 * 109.47024 * 204.89651 * 20 19 17 47 47 H 1.09007 * 109.47204 * 324.89582 * 20 19 17 48 48 H 1.08990 * 109.47037 * 209.99931 * 21 19 17 49 49 H 1.09007 * 109.46680 * 330.00012 * 21 19 17 50 50 H 0.97007 * 119.99370 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9975 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 1 3.6869 -1.0438 3.3636 9 6 1.7184 -1.6369 4.0189 10 6 2.2129 -2.2590 5.3269 11 8 2.3478 -1.2374 6.3190 12 6 3.2476 -0.1937 5.9528 13 6 3.5429 0.7909 7.0915 14 6 4.7057 -0.1371 7.4834 15 6 4.7241 -0.6056 6.0181 16 6 2.8649 0.4895 4.6406 17 6 2.0323 -0.7104 -1.2305 18 8 2.4838 -1.8325 -1.1411 19 7 1.9850 -0.0966 -2.4295 20 6 1.5497 1.2992 -2.5212 21 6 2.3687 -0.8253 -3.6411 22 6 1.1565 -1.5053 -4.2235 23 1 0.1962 -1.4043 -3.7398 24 6 1.2732 -2.2554 -5.3746 25 7 2.4426 -2.3778 -5.9638 26 14 -0.2295 -3.0976 -6.0969 27 1 -0.8961 -2.1822 -7.0576 28 1 0.1882 -4.3362 -6.8017 29 1 -1.1752 -3.4441 -5.0057 30 1 -0.3634 0.4327 -0.9321 31 1 -0.3634 -1.0236 0.0913 32 1 -0.3633 0.5909 0.8408 33 1 0.7463 -1.1717 4.1823 34 1 1.6272 -2.4130 3.2590 35 1 3.1797 -2.7341 5.1607 36 1 1.4953 -3.0050 5.6687 37 1 3.8653 1.7735 6.7468 38 1 2.7530 0.8420 7.8407 39 1 4.4217 -0.9189 8.1880 40 1 5.6086 0.3949 7.7829 41 1 4.8841 -1.6778 5.9042 42 1 5.3727 -0.0100 5.3757 43 1 3.6434 1.1979 4.3574 44 1 1.9190 1.0169 4.7641 45 1 2.3978 1.9574 -2.3330 46 1 1.1546 1.4918 -3.5186 47 1 0.7726 1.4869 -1.7801 48 1 2.7791 -0.1270 -4.3704 49 1 3.1207 -1.5741 -3.3919 50 1 2.5247 -2.9058 -6.7734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885657898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:16 Heat of formation + Delta-G solvation = -146.540649 kcal Electronic energy + Delta-G solvation = -30538.150554 eV Core-core repulsion = 26338.426633 eV Total energy + Delta-G solvation = -4199.723922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.28558 -40.35640 -38.95336 -36.68260 -36.42224 -34.91799 -34.22452 -32.83734 -31.56490 -30.07594 -27.82453 -26.54003 -26.17416 -26.05522 -24.37901 -23.66640 -22.87163 -21.78747 -20.24844 -19.42631 -18.84848 -17.99112 -16.86199 -16.58245 -16.49259 -16.27983 -16.23059 -15.65362 -15.30437 -15.02076 -14.74957 -14.69546 -14.28026 -14.24673 -13.90580 -13.58928 -13.39885 -13.12024 -12.76592 -12.71355 -12.39236 -12.17790 -12.10156 -12.05155 -11.91668 -11.73887 -11.46947 -11.36992 -11.26010 -11.20812 -11.16646 -11.06190 -10.95184 -10.74462 -10.61061 -10.53220 -10.25803 -10.20514 -9.69278 -9.67286 -8.94402 -8.48438 -7.75437 -6.09291 -4.14704 2.09484 2.42027 3.20597 3.27042 3.28485 3.34066 3.38537 3.83238 4.06111 4.19046 4.36954 4.38668 4.40935 4.44663 4.50807 4.66136 4.78599 4.86402 4.96360 5.02612 5.03920 5.08722 5.17393 5.25323 5.31754 5.32735 5.39908 5.44014 5.49210 5.56012 5.57188 5.61289 5.66058 5.70966 5.74875 5.82419 5.83471 5.94759 5.95986 6.05269 6.21407 6.40642 6.93259 6.95709 7.36559 7.43494 7.67423 7.86650 8.16247 8.25942 8.80347 8.95449 9.50473 10.98799 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.002235 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.302250 B =12525.011959 C =12793.041974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.324 6.324 5 C 0.465 3.535 6 O -0.509 6.509 7 C -0.080 4.080 8 H 0.112 0.888 9 C -0.149 4.149 10 C 0.063 3.937 11 O -0.356 6.356 12 C 0.093 3.907 13 C -0.124 4.124 14 C -0.135 4.135 15 C -0.167 4.167 16 C -0.117 4.117 17 C 0.510 3.490 18 O -0.521 6.521 19 N -0.596 5.596 20 C 0.073 3.927 21 C 0.245 3.755 22 C -0.530 4.530 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.036 0.964 49 H 0.046 0.954 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 7.147 24.549 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.120 0.880 4 O -0.239 6.239 5 C 0.308 3.692 6 O -0.398 6.398 7 C -0.099 4.099 8 H 0.129 0.871 9 C -0.187 4.187 10 C -0.013 4.013 11 O -0.274 6.274 12 C 0.053 3.947 13 C -0.161 4.161 14 C -0.172 4.172 15 C -0.205 4.205 16 C -0.155 4.155 17 C 0.294 3.706 18 O -0.396 6.396 19 N -0.330 5.330 20 C -0.071 4.071 21 C 0.127 3.873 22 C -0.568 4.568 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.272 6.801 24.534 25.491 hybrid contribution -0.782 -0.286 -1.040 1.332 sum 0.489 6.515 23.495 24.386 Atomic orbital electron populations 1.22160 0.92120 1.04142 1.03744 1.22676 0.96068 0.97345 0.82804 0.88042 1.86630 1.76237 1.41472 1.19537 1.23683 0.74176 0.85848 0.85473 1.90632 1.48164 1.16620 1.84338 1.21099 1.01551 0.97750 0.89466 0.87056 1.22192 0.98781 0.98672 0.99040 1.22611 1.01234 0.89929 0.87543 1.87918 1.63781 1.33768 1.41961 1.22255 0.89149 0.89249 0.94028 1.22949 0.98705 0.97236 0.97187 1.22785 0.98479 0.99412 0.96519 1.23540 0.96783 1.02278 0.97877 1.21969 1.04287 0.96842 0.92364 1.19761 0.80241 0.86778 0.83787 1.90691 1.44919 1.18666 1.85361 1.48084 1.64944 1.12255 1.07713 1.21842 0.98911 0.82760 1.03559 1.19369 0.96673 0.92071 0.79200 1.21418 0.94940 1.31229 1.09250 0.92367 1.24945 0.96258 0.96160 0.96734 1.69936 1.23078 1.40501 1.19677 0.86478 0.82691 0.79066 0.79084 1.20593 1.21030 1.19870 0.89459 0.90643 0.91331 0.90312 0.88741 0.92430 0.87968 0.88651 0.90352 0.89799 0.91260 0.90794 0.89116 0.89712 0.89835 0.93431 0.90046 0.92237 0.94627 0.93575 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.20 37.16 0.34 -2.01 16 2 C 0.07 1.17 2.14 -27.88 -0.06 1.11 16 3 H 0.10 1.57 6.34 -51.93 -0.33 1.24 16 4 O -0.32 -5.34 9.40 -45.76 -0.43 -5.77 16 5 C 0.47 6.50 7.23 36.01 0.26 6.76 16 6 O -0.51 -7.84 15.15 -18.75 -0.28 -8.12 16 7 C -0.08 -0.83 2.64 -91.53 -0.24 -1.08 16 8 H 0.11 1.07 8.11 -51.93 -0.42 0.65 16 9 C -0.15 -1.39 5.31 -26.63 -0.14 -1.53 16 10 C 0.06 0.51 6.73 37.18 0.25 0.76 16 11 O -0.36 -3.41 10.45 -35.23 -0.37 -3.78 16 12 C 0.09 0.79 1.03 -90.29 -0.09 0.69 16 13 C -0.12 -0.88 7.47 -26.08 -0.19 -1.08 16 14 C -0.13 -0.90 8.02 -25.84 -0.21 -1.10 16 15 C -0.17 -1.22 7.11 -26.07 -0.19 -1.40 16 16 C -0.12 -1.10 3.90 -26.67 -0.10 -1.20 16 17 C 0.51 10.94 6.96 -10.98 -0.08 10.86 16 18 O -0.52 -13.43 16.13 -13.58 -0.22 -13.65 16 19 N -0.60 -12.68 2.86 -182.95 -0.52 -13.21 16 20 C 0.07 1.16 9.80 59.85 0.59 1.74 16 21 C 0.25 6.38 5.18 -5.20 -0.03 6.35 16 22 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 23 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 24 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 26 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.09 1.19 6.24 -51.93 -0.32 0.86 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.42 7.21 -51.93 -0.37 0.05 16 36 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.54 7.26 -51.93 -0.38 0.17 16 42 H 0.09 0.61 8.02 -51.93 -0.42 0.19 16 43 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 44 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 47 H 0.06 0.79 4.86 -51.92 -0.25 0.54 16 48 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 49 H 0.05 1.35 7.36 -51.92 -0.38 0.97 16 50 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -34.12 400.67 -8.70 -42.82 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -8.31 Total: -0.73 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.31 Total: 5.39 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.21 Total: -38.76 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.30 Total: -31.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.12 -8.70 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885657898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.722 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds