Wall clock time and date at job start Tue Mar 31 2020 22:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47256 * 2 1 4 4 O 1.45198 * 109.46990 * 120.00543 * 2 1 3 5 5 C 1.34231 * 116.99587 * 269.99472 * 4 2 1 6 6 O 1.20821 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99941 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.55025 * 59.79719 * 7 5 4 9 9 C 1.53153 * 109.55254 * 299.49125 * 7 5 4 10 10 C 1.53048 * 109.40521 * 181.52406 * 9 7 5 11 11 O 1.43047 * 109.44558 * 59.32817 * 10 9 7 12 12 C 1.42584 * 113.84088 * 301.26986 * 11 10 9 13 13 C 1.53398 * 113.62133 * 188.22215 * 12 11 10 14 14 C 1.53857 * 86.98462 * 89.43851 * 13 12 11 15 15 C 1.53431 * 113.56701 * 286.14209 * 12 11 10 16 16 C 1.52807 * 112.94052 * 57.10819 * 12 11 10 17 17 C 1.50703 * 109.47055 * 240.00083 * 2 1 3 18 18 O 1.21278 * 120.00313 * 255.41552 * 17 2 1 19 19 N 1.34784 * 119.99984 * 75.69016 * 17 2 1 20 20 C 1.46498 * 119.99788 * 5.07364 * 19 17 2 21 21 C 1.46498 * 120.00222 * 185.07486 * 19 17 2 22 22 C 1.50697 * 109.47170 * 89.99590 * 21 19 17 23 23 H 1.08001 * 119.99875 * 0.02562 * 22 21 19 24 24 C 1.37880 * 120.00022 * 179.97438 * 22 21 19 25 25 N 1.31514 * 119.99710 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99942 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47086 * 90.00375 * 26 24 22 28 28 H 1.48504 * 109.46960 * 210.00346 * 26 24 22 29 29 H 1.48496 * 109.47253 * 330.00192 * 26 24 22 30 30 H 1.09000 * 109.47446 * 65.10029 * 1 2 3 31 31 H 1.09006 * 109.47138 * 185.09884 * 1 2 3 32 32 H 1.08995 * 109.47093 * 305.09773 * 1 2 3 33 33 H 1.09003 * 109.48243 * 301.50365 * 9 7 5 34 34 H 1.08996 * 109.48381 * 61.54536 * 9 7 5 35 35 H 1.08998 * 109.47976 * 299.33463 * 10 9 7 36 36 H 1.09007 * 109.47912 * 179.31596 * 10 9 7 37 37 H 1.09004 * 113.62685 * 203.95770 * 13 12 11 38 38 H 1.08990 * 113.63024 * 334.91438 * 13 12 11 39 39 H 1.09003 * 113.60267 * 270.60183 * 14 13 12 40 40 H 1.08995 * 113.68169 * 139.73523 * 14 13 12 41 41 H 1.09002 * 113.63243 * 25.03136 * 15 12 11 42 42 H 1.09001 * 113.62903 * 155.90288 * 15 12 11 43 43 H 1.08996 * 109.56690 * 186.21487 * 16 12 11 44 44 H 1.09003 * 109.65730 * 65.93114 * 16 12 11 45 45 H 1.09000 * 109.47256 * 84.89455 * 20 19 17 46 46 H 1.09000 * 109.47024 * 204.89651 * 20 19 17 47 47 H 1.09007 * 109.47204 * 324.89582 * 20 19 17 48 48 H 1.08990 * 109.47037 * 209.99931 * 21 19 17 49 49 H 1.09007 * 109.46680 * 330.00012 * 21 19 17 50 50 H 0.97007 * 119.99370 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9975 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 1 3.6869 -1.0438 3.3636 9 6 1.7184 -1.6369 4.0189 10 6 2.2129 -2.2590 5.3269 11 8 2.3478 -1.2374 6.3190 12 6 3.2476 -0.1937 5.9528 13 6 3.5429 0.7909 7.0915 14 6 4.7057 -0.1371 7.4834 15 6 4.7241 -0.6056 6.0181 16 6 2.8649 0.4895 4.6406 17 6 2.0323 -0.7104 -1.2305 18 8 2.4838 -1.8325 -1.1411 19 7 1.9850 -0.0966 -2.4295 20 6 1.5497 1.2992 -2.5212 21 6 2.3687 -0.8253 -3.6411 22 6 1.1565 -1.5053 -4.2235 23 1 0.1962 -1.4043 -3.7398 24 6 1.2732 -2.2554 -5.3746 25 7 2.4426 -2.3778 -5.9638 26 14 -0.2295 -3.0976 -6.0969 27 1 -0.8961 -2.1822 -7.0576 28 1 0.1882 -4.3362 -6.8017 29 1 -1.1752 -3.4441 -5.0057 30 1 -0.3634 0.4327 -0.9321 31 1 -0.3634 -1.0236 0.0913 32 1 -0.3633 0.5909 0.8408 33 1 0.7463 -1.1717 4.1823 34 1 1.6272 -2.4130 3.2590 35 1 3.1797 -2.7341 5.1607 36 1 1.4953 -3.0050 5.6687 37 1 3.8653 1.7735 6.7468 38 1 2.7530 0.8420 7.8407 39 1 4.4217 -0.9189 8.1880 40 1 5.6086 0.3949 7.7829 41 1 4.8841 -1.6778 5.9042 42 1 5.3727 -0.0100 5.3757 43 1 3.6434 1.1979 4.3574 44 1 1.9190 1.0169 4.7641 45 1 2.3978 1.9574 -2.3330 46 1 1.1546 1.4918 -3.5186 47 1 0.7726 1.4869 -1.7801 48 1 2.7791 -0.1270 -4.3704 49 1 3.1207 -1.5741 -3.3919 50 1 2.5247 -2.9058 -6.7734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885657898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:15 Heat of formation + Delta-G solvation = -166.281994 kcal Electronic energy + Delta-G solvation = -30539.006603 eV Core-core repulsion = 26338.426633 eV Total energy + Delta-G solvation = -4200.579971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.26698 -41.34206 -40.47587 -37.80782 -37.20578 -36.71184 -35.08423 -34.82841 -32.99032 -30.75518 -29.73160 -27.65937 -27.32107 -26.72960 -25.96214 -24.43971 -24.29178 -22.85627 -21.22339 -20.43646 -20.06810 -19.10228 -18.70817 -18.19319 -17.56665 -17.40050 -17.04297 -17.03053 -16.53891 -16.34112 -15.99462 -15.83816 -15.41695 -15.08607 -14.75265 -14.70358 -14.66807 -14.25786 -14.14912 -13.90306 -13.64774 -13.58996 -13.34595 -13.26705 -13.12905 -12.89785 -12.74803 -12.70400 -12.59240 -12.51932 -12.22589 -12.10604 -11.96686 -11.88502 -11.78470 -11.74235 -11.73178 -11.44490 -10.94295 -10.66246 -10.65431 -10.34318 -9.55056 -8.24458 -6.39345 0.98322 1.22075 1.36990 1.39950 1.49374 1.57417 2.29282 2.41542 2.67030 3.05768 3.32512 3.36226 3.43373 3.55160 3.66968 3.71878 3.79889 3.83576 3.86550 3.99831 4.11553 4.24605 4.25224 4.36900 4.46708 4.52789 4.55317 4.61274 4.65045 4.73326 4.81256 4.82784 4.84404 4.91367 4.93786 4.97000 5.01162 5.04623 5.08583 5.15708 5.18235 5.28163 5.33024 5.42113 5.49602 5.76250 6.01412 6.29131 6.47297 6.60310 6.69409 7.16838 7.33902 8.83143 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.002235 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.302250 B =12525.011959 C =12793.041974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.079 3.921 3 H 0.120 0.880 4 O -0.341 6.341 5 C 0.466 3.534 6 O -0.523 6.523 7 C -0.077 4.077 8 H 0.121 0.879 9 C -0.145 4.145 10 C 0.064 3.936 11 O -0.369 6.369 12 C 0.086 3.914 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.166 4.166 16 C -0.111 4.111 17 C 0.502 3.498 18 O -0.577 6.577 19 N -0.601 5.601 20 C 0.066 3.934 21 C 0.259 3.741 22 C -0.544 4.544 23 H 0.058 0.942 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.969 3.031 27 H -0.263 1.263 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.030 0.970 49 H 0.000 1.000 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 8.171 25.778 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 H 0.137 0.863 4 O -0.257 6.257 5 C 0.310 3.690 6 O -0.411 6.411 7 C -0.096 4.096 8 H 0.139 0.861 9 C -0.183 4.183 10 C -0.012 4.012 11 O -0.288 6.288 12 C 0.047 3.953 13 C -0.160 4.160 14 C -0.168 4.168 15 C -0.204 4.204 16 C -0.148 4.148 17 C 0.289 3.711 18 O -0.457 6.457 19 N -0.333 5.333 20 C -0.075 4.075 21 C 0.138 3.862 22 C -0.583 4.583 23 H 0.076 0.924 24 C -0.192 4.192 25 N -0.567 5.567 26 Si 0.793 3.207 27 H -0.188 1.188 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.048 0.952 49 H 0.018 0.982 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.108 7.883 25.780 26.959 hybrid contribution -0.371 -0.564 -1.397 1.551 sum -0.262 7.319 24.384 25.460 Atomic orbital electron populations 1.22163 0.90003 1.04130 1.05259 1.22537 0.97391 0.96956 0.81003 0.86292 1.86649 1.76667 1.42379 1.20001 1.24344 0.73485 0.85728 0.85474 1.90615 1.48864 1.17185 1.84474 1.21249 1.02068 0.98339 0.87985 0.86097 1.22176 0.98350 0.98171 0.99630 1.22701 1.02114 0.89818 0.86587 1.87907 1.64208 1.34214 1.42456 1.22392 0.89633 0.89467 0.93855 1.23009 0.98801 0.97628 0.96562 1.22761 0.98785 0.99219 0.96003 1.23562 0.95921 1.02393 0.98509 1.21948 1.03874 0.96533 0.92483 1.20617 0.79113 0.86343 0.85070 1.90653 1.47354 1.21286 1.86375 1.48073 1.64602 1.14127 1.06474 1.22159 1.00876 0.79763 1.04730 1.18870 0.95197 0.91308 0.80843 1.21684 0.95289 1.31714 1.09567 0.92387 1.25878 0.99396 0.96734 0.97167 1.70057 1.25257 1.41228 1.20185 0.85388 0.78791 0.78074 0.78403 1.18769 1.20759 1.19597 0.88509 0.91662 0.88951 0.90687 0.89248 0.91573 0.86493 0.87515 0.90681 0.90174 0.89996 0.90891 0.88399 0.89283 0.90950 0.90945 0.90054 0.89118 0.95198 0.98166 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 9.20 71.98 0.66 -3.57 16 2 C 0.08 2.58 2.14 29.85 0.06 2.64 16 3 H 0.12 3.43 6.34 -2.39 -0.02 3.42 16 4 O -0.34 -11.11 9.40 -45.21 -0.42 -11.53 16 5 C 0.47 12.55 7.23 71.24 0.52 13.07 16 6 O -0.52 -15.27 15.15 21.98 0.33 -14.93 16 7 C -0.08 -1.55 2.64 -11.38 -0.03 -1.58 16 8 H 0.12 2.19 8.11 -2.39 -0.02 2.18 16 9 C -0.15 -2.59 5.31 30.66 0.16 -2.43 16 10 C 0.06 0.95 6.73 72.00 0.48 1.43 16 11 O -0.37 -6.58 10.45 -148.98 -1.56 -8.13 16 12 C 0.09 1.33 1.03 -10.58 -0.01 1.32 16 13 C -0.12 -1.55 7.47 31.02 0.23 -1.32 16 14 C -0.13 -1.50 8.02 31.17 0.25 -1.25 16 15 C -0.17 -2.13 7.11 31.02 0.22 -1.91 16 16 C -0.11 -1.94 3.90 30.64 0.12 -1.82 16 17 C 0.50 21.79 6.96 87.66 0.61 22.40 16 18 O -0.58 -31.01 16.13 15.28 0.25 -30.76 16 19 N -0.60 -25.70 2.86 -851.13 -2.43 -28.13 16 20 C 0.07 1.98 9.80 127.77 1.25 3.23 16 21 C 0.26 13.91 5.18 85.63 0.44 14.35 16 22 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 23 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 24 C 0.01 0.42 5.46 84.66 0.46 0.89 16 25 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 26 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 27 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 30 H 0.10 2.38 6.24 -2.39 -0.01 2.37 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 0.87 7.21 -2.39 -0.02 0.85 16 36 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.11 1.08 8.09 -2.38 -0.02 1.06 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.95 7.26 -2.39 -0.02 0.94 16 42 H 0.10 1.11 8.02 -2.39 -0.02 1.09 16 43 H 0.09 1.47 8.04 -2.39 -0.02 1.45 16 44 H 0.07 1.43 7.96 -2.39 -0.02 1.41 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 2.45 8.03 -2.39 -0.02 2.43 16 47 H 0.09 2.14 4.86 -2.38 -0.01 2.13 16 48 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 49 H 0.00 0.01 7.36 -2.38 -0.02 0.00 16 50 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -75.66 400.67 5.08 -70.58 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.92 Total: 17.17 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.68 Total: 14.84 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.15 Total: -83.51 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -1.40 Total: -65.36 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.66 5.08 -70.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885657898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.699 kcal (2) G-P(sol) polarization free energy of solvation -75.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds