Wall clock time and date at job start Tue Mar 31 2020 22:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47264 * 2 1 4 4 O 1.45196 * 109.47211 * 119.99652 * 2 1 3 5 5 C 1.34230 * 117.00229 * 269.99827 * 4 2 1 6 6 O 1.20831 * 119.99745 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00206 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.55748 * 300.20820 * 7 5 4 9 9 C 1.53158 * 109.55602 * 60.51917 * 7 5 4 10 10 C 1.53038 * 109.41558 * 178.47034 * 9 7 5 11 11 O 1.43041 * 109.44642 * 300.68201 * 10 9 7 12 12 C 1.42577 * 113.85155 * 58.71905 * 11 10 9 13 13 C 1.53396 * 113.62658 * 171.78401 * 12 11 10 14 14 C 1.53846 * 87.08028 * 270.51376 * 13 12 11 15 15 C 1.53428 * 113.57226 * 73.85882 * 12 11 10 16 16 C 1.52811 * 112.93850 * 302.89705 * 12 11 10 17 17 C 1.50697 * 109.47265 * 239.99599 * 2 1 3 18 18 O 1.21273 * 120.00505 * 248.56754 * 17 2 1 19 19 N 1.34783 * 119.99907 * 68.56535 * 17 2 1 20 20 C 1.46507 * 119.99700 * 4.59047 * 19 17 2 21 21 C 1.46494 * 120.00291 * 184.58405 * 19 17 2 22 22 C 1.50701 * 109.46999 * 90.00185 * 21 19 17 23 23 H 1.07998 * 120.00094 * 0.02562 * 22 21 19 24 24 C 1.37877 * 120.00100 * 180.02562 * 22 21 19 25 25 N 1.31518 * 119.99697 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00083 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47298 * 89.99602 * 26 24 22 28 28 H 1.48499 * 109.46829 * 209.99609 * 26 24 22 29 29 H 1.48499 * 109.47278 * 329.99560 * 26 24 22 30 30 H 1.08999 * 109.47249 * 67.15025 * 1 2 3 31 31 H 1.09000 * 109.47199 * 187.15496 * 1 2 3 32 32 H 1.09002 * 109.47162 * 307.15438 * 1 2 3 33 33 H 1.09003 * 109.47377 * 298.45308 * 9 7 5 34 34 H 1.09003 * 109.48011 * 58.48006 * 9 7 5 35 35 H 1.08998 * 109.47314 * 60.67484 * 10 9 7 36 36 H 1.08994 * 109.47283 * 180.68298 * 10 9 7 37 37 H 1.08998 * 113.62820 * 25.08337 * 13 12 11 38 38 H 1.09004 * 113.63139 * 155.95034 * 13 12 11 39 39 H 1.09004 * 113.60466 * 89.44089 * 14 13 12 40 40 H 1.08999 * 113.60724 * 220.31247 * 14 13 12 41 41 H 1.09000 * 113.63251 * 204.01376 * 15 12 11 42 42 H 1.09002 * 113.62925 * 334.88897 * 15 12 11 43 43 H 1.09001 * 109.57094 * 173.78104 * 16 12 11 44 44 H 1.09005 * 109.56135 * 294.01025 * 16 12 11 45 45 H 1.08995 * 109.47547 * 86.11727 * 20 19 17 46 46 H 1.08998 * 109.46790 * 206.11835 * 20 19 17 47 47 H 1.09001 * 109.47245 * 326.11048 * 20 19 17 48 48 H 1.08996 * 109.47531 * 210.00587 * 21 19 17 49 49 H 1.09004 * 109.46999 * 330.00324 * 21 19 17 50 50 H 0.97004 * 119.99598 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2172 0.0641 2.2811 6 8 1.9974 1.2519 2.2505 7 6 2.7183 -0.5770 3.5495 8 1 2.0116 -1.3395 3.8768 9 6 4.0857 -1.2181 3.2943 10 6 4.6087 -1.8349 4.5935 11 8 4.7225 -0.8170 5.5920 12 6 3.4955 -0.1493 5.8771 13 6 3.5761 0.7975 7.0813 14 6 3.1757 -0.4048 7.9536 15 6 2.5120 -0.9960 6.6956 16 6 2.8640 0.4898 4.6410 17 6 2.0324 -0.7105 -1.2304 18 8 2.5963 -1.7790 -1.1259 19 7 1.8548 -0.1584 -2.4470 20 6 1.2645 1.1772 -2.5663 21 6 2.2523 -0.8936 -3.6502 22 6 1.0933 -1.7250 -4.1366 23 1 0.1544 -1.7071 -3.6032 24 6 1.2315 -2.5084 -5.2627 25 7 2.3747 -2.5298 -5.9126 26 14 -0.2053 -3.5384 -5.8661 27 1 -1.0174 -2.7434 -6.8219 28 1 0.3085 -4.7548 -6.5454 29 1 -1.0492 -3.9358 -4.7106 30 1 -0.3634 0.3991 -0.9470 31 1 -0.3633 -1.0197 0.1280 32 1 -0.3633 0.6207 0.8191 33 1 3.9868 -1.9955 2.5367 34 1 4.7844 -0.4575 2.9458 35 1 3.9158 -2.6036 4.9356 36 1 5.5873 -2.2808 4.4159 37 1 4.5823 1.1661 7.2806 38 1 2.8299 1.5919 7.0632 39 1 4.0252 -0.9857 8.3127 40 1 2.4687 -0.1541 8.7444 41 1 1.4708 -0.6981 6.5717 42 1 2.6616 -2.0698 6.5835 43 1 1.8817 0.8869 4.8967 44 1 3.5019 1.2974 4.2815 45 1 2.0471 1.9301 -2.4733 46 1 0.7800 1.2748 -3.5378 47 1 0.5270 1.3203 -1.7765 48 1 2.5446 -0.1877 -4.4275 49 1 3.0941 -1.5454 -3.4162 50 1 2.4718 -3.0808 -6.7051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885657899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:21 Heat of formation + Delta-G solvation = -142.785659 kcal Electronic energy + Delta-G solvation = -30571.472464 eV Core-core repulsion = 26371.911371 eV Total energy + Delta-G solvation = -4199.561093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.27202 -40.35075 -38.96228 -36.66803 -36.40724 -34.94008 -34.20654 -32.86914 -31.55744 -30.04773 -27.77097 -26.55626 -26.17539 -26.09469 -24.33481 -23.65340 -22.87629 -21.74861 -20.28696 -19.40824 -18.88153 -17.93746 -16.83956 -16.57092 -16.47668 -16.43830 -16.12023 -15.60864 -15.25474 -15.03983 -14.78561 -14.58812 -14.44084 -14.18820 -13.98601 -13.55692 -13.34558 -13.09730 -12.86400 -12.69916 -12.47685 -12.19746 -12.09731 -12.01336 -11.84626 -11.66926 -11.41884 -11.33210 -11.23174 -11.20959 -11.15243 -11.03812 -10.91936 -10.73457 -10.58977 -10.53811 -10.24772 -10.19760 -9.68621 -9.65555 -8.93666 -8.48089 -7.74855 -6.08926 -4.14289 2.09452 2.43750 3.21166 3.27179 3.30726 3.34214 3.38641 3.83383 4.07007 4.19553 4.37360 4.40709 4.41181 4.45383 4.52839 4.68317 4.77674 4.87250 4.94938 5.02000 5.06040 5.08762 5.18856 5.25674 5.31741 5.34085 5.39228 5.43528 5.48050 5.55740 5.59934 5.61861 5.64762 5.73180 5.77964 5.84219 5.86294 5.95600 5.97567 6.04100 6.24645 6.41241 6.95589 6.96227 7.36912 7.43838 7.67929 7.87013 8.16648 8.26472 8.80892 8.95951 9.50840 10.99175 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.002266 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.960384 B =12355.624259 C =12703.266293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.323 6.323 5 C 0.465 3.535 6 O -0.510 6.510 7 C -0.078 4.078 8 H 0.110 0.890 9 C -0.151 4.151 10 C 0.064 3.936 11 O -0.355 6.355 12 C 0.093 3.907 13 C -0.124 4.124 14 C -0.135 4.135 15 C -0.167 4.167 16 C -0.117 4.117 17 C 0.510 3.490 18 O -0.521 6.521 19 N -0.596 5.596 20 C 0.067 3.933 21 C 0.246 3.754 22 C -0.529 4.529 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.036 0.964 49 H 0.046 0.954 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 7.283 24.591 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.011 3.989 3 H 0.120 0.880 4 O -0.238 6.238 5 C 0.308 3.692 6 O -0.398 6.398 7 C -0.097 4.097 8 H 0.128 0.872 9 C -0.189 4.189 10 C -0.012 4.012 11 O -0.274 6.274 12 C 0.053 3.947 13 C -0.161 4.161 14 C -0.172 4.172 15 C -0.204 4.204 16 C -0.155 4.155 17 C 0.294 3.706 18 O -0.396 6.396 19 N -0.330 5.330 20 C -0.077 4.077 21 C 0.127 3.873 22 C -0.568 4.568 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.288 7.018 24.497 25.484 hybrid contribution -1.165 -0.470 -0.848 1.515 sum -0.877 6.548 23.649 24.555 Atomic orbital electron populations 1.22296 0.92260 1.04141 1.04037 1.22643 0.95932 0.97406 0.82892 0.87977 1.86629 1.76213 1.41414 1.19526 1.23693 0.74026 0.85883 0.85577 1.90634 1.48289 1.16582 1.84298 1.21090 0.99286 0.99430 0.89928 0.87168 1.22209 0.94607 1.02287 0.99751 1.22610 1.02451 0.89704 0.86478 1.87919 1.29702 1.51585 1.58213 1.22242 0.85605 0.93905 0.92922 1.22946 1.02969 0.96622 0.93579 1.22814 1.00647 0.97378 0.96349 1.23566 0.99328 1.00569 0.96978 1.21972 1.02617 0.97426 0.93462 1.19760 0.80888 0.86139 0.83820 1.90690 1.41701 1.21484 1.85773 1.48067 1.60769 1.17248 1.06866 1.21977 0.97880 0.84203 1.03600 1.19364 0.96801 0.91641 0.79477 1.21415 0.98378 1.26343 1.10646 0.92373 1.24945 0.96105 0.96608 0.96454 1.69936 1.24050 1.40269 1.18949 0.86477 0.82220 0.79817 0.78799 1.20602 1.21036 1.19877 0.88951 0.90656 0.91327 0.88519 0.90265 0.92502 0.87899 0.90340 0.88686 0.89783 0.91274 0.89205 0.90804 0.89765 0.89818 0.93427 0.90106 0.91693 0.94643 0.93594 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.14 37.16 0.34 -2.06 16 2 C 0.07 1.17 2.16 -27.88 -0.06 1.11 16 3 H 0.10 1.59 6.73 -51.93 -0.35 1.24 16 4 O -0.32 -5.34 9.37 -45.86 -0.43 -5.77 16 5 C 0.47 6.53 7.23 36.01 0.26 6.80 16 6 O -0.51 -7.87 15.15 -18.75 -0.28 -8.16 16 7 C -0.08 -0.83 2.64 -91.52 -0.24 -1.07 16 8 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 9 C -0.15 -1.55 5.30 -26.63 -0.14 -1.69 16 10 C 0.06 0.55 6.73 37.18 0.25 0.80 16 11 O -0.36 -3.56 10.45 -35.23 -0.37 -3.93 16 12 C 0.09 0.80 1.03 -90.29 -0.09 0.70 16 13 C -0.12 -0.89 7.46 -26.09 -0.19 -1.09 16 14 C -0.13 -0.89 8.04 -25.75 -0.21 -1.09 16 15 C -0.17 -1.18 7.12 -25.97 -0.18 -1.37 16 16 C -0.12 -1.11 3.90 -26.66 -0.10 -1.21 16 17 C 0.51 10.91 7.03 -10.98 -0.08 10.83 16 18 O -0.52 -13.40 16.08 -13.94 -0.22 -13.62 16 19 N -0.60 -12.65 2.86 -182.96 -0.52 -13.17 16 20 C 0.07 1.05 9.80 59.85 0.59 1.64 16 21 C 0.25 6.39 5.18 -5.20 -0.03 6.36 16 22 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 23 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 24 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 26 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 29 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.09 1.23 5.46 -51.93 -0.28 0.95 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.43 7.21 -51.93 -0.37 0.05 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16 42 H 0.07 0.53 7.26 -51.93 -0.38 0.15 16 43 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 44 H 0.08 0.90 7.97 -51.93 -0.41 0.49 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 47 H 0.06 0.85 4.31 -51.93 -0.22 0.63 16 48 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 49 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 50 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -34.14 399.72 -8.67 -42.81 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.27 Total: -0.38 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.31 Total: 5.19 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.21 Total: -38.74 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.31 Total: -31.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.14 -8.67 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885657899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.974 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds