Wall clock time and date at job start Tue Mar 31 2020 22:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47264 * 2 1 4 4 O 1.45196 * 109.47211 * 119.99652 * 2 1 3 5 5 C 1.34230 * 117.00229 * 269.99827 * 4 2 1 6 6 O 1.20831 * 119.99745 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00206 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.55748 * 300.20820 * 7 5 4 9 9 C 1.53158 * 109.55602 * 60.51917 * 7 5 4 10 10 C 1.53038 * 109.41558 * 178.47034 * 9 7 5 11 11 O 1.43041 * 109.44642 * 300.68201 * 10 9 7 12 12 C 1.42577 * 113.85155 * 58.71905 * 11 10 9 13 13 C 1.53396 * 113.62658 * 171.78401 * 12 11 10 14 14 C 1.53846 * 87.08028 * 270.51376 * 13 12 11 15 15 C 1.53428 * 113.57226 * 73.85882 * 12 11 10 16 16 C 1.52811 * 112.93850 * 302.89705 * 12 11 10 17 17 C 1.50697 * 109.47265 * 239.99599 * 2 1 3 18 18 O 1.21273 * 120.00505 * 248.56754 * 17 2 1 19 19 N 1.34783 * 119.99907 * 68.56535 * 17 2 1 20 20 C 1.46507 * 119.99700 * 4.59047 * 19 17 2 21 21 C 1.46494 * 120.00291 * 184.58405 * 19 17 2 22 22 C 1.50701 * 109.46999 * 90.00185 * 21 19 17 23 23 H 1.07998 * 120.00094 * 0.02562 * 22 21 19 24 24 C 1.37877 * 120.00100 * 180.02562 * 22 21 19 25 25 N 1.31518 * 119.99697 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00083 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47298 * 89.99602 * 26 24 22 28 28 H 1.48499 * 109.46829 * 209.99609 * 26 24 22 29 29 H 1.48499 * 109.47278 * 329.99560 * 26 24 22 30 30 H 1.08999 * 109.47249 * 67.15025 * 1 2 3 31 31 H 1.09000 * 109.47199 * 187.15496 * 1 2 3 32 32 H 1.09002 * 109.47162 * 307.15438 * 1 2 3 33 33 H 1.09003 * 109.47377 * 298.45308 * 9 7 5 34 34 H 1.09003 * 109.48011 * 58.48006 * 9 7 5 35 35 H 1.08998 * 109.47314 * 60.67484 * 10 9 7 36 36 H 1.08994 * 109.47283 * 180.68298 * 10 9 7 37 37 H 1.08998 * 113.62820 * 25.08337 * 13 12 11 38 38 H 1.09004 * 113.63139 * 155.95034 * 13 12 11 39 39 H 1.09004 * 113.60466 * 89.44089 * 14 13 12 40 40 H 1.08999 * 113.60724 * 220.31247 * 14 13 12 41 41 H 1.09000 * 113.63251 * 204.01376 * 15 12 11 42 42 H 1.09002 * 113.62925 * 334.88897 * 15 12 11 43 43 H 1.09001 * 109.57094 * 173.78104 * 16 12 11 44 44 H 1.09005 * 109.56135 * 294.01025 * 16 12 11 45 45 H 1.08995 * 109.47547 * 86.11727 * 20 19 17 46 46 H 1.08998 * 109.46790 * 206.11835 * 20 19 17 47 47 H 1.09001 * 109.47245 * 326.11048 * 20 19 17 48 48 H 1.08996 * 109.47531 * 210.00587 * 21 19 17 49 49 H 1.09004 * 109.46999 * 330.00324 * 21 19 17 50 50 H 0.97004 * 119.99598 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2172 0.0641 2.2811 6 8 1.9974 1.2519 2.2505 7 6 2.7183 -0.5770 3.5495 8 1 2.0116 -1.3395 3.8768 9 6 4.0857 -1.2181 3.2943 10 6 4.6087 -1.8349 4.5935 11 8 4.7225 -0.8170 5.5920 12 6 3.4955 -0.1493 5.8771 13 6 3.5761 0.7975 7.0813 14 6 3.1757 -0.4048 7.9536 15 6 2.5120 -0.9960 6.6956 16 6 2.8640 0.4898 4.6410 17 6 2.0324 -0.7105 -1.2304 18 8 2.5963 -1.7790 -1.1259 19 7 1.8548 -0.1584 -2.4470 20 6 1.2645 1.1772 -2.5663 21 6 2.2523 -0.8936 -3.6502 22 6 1.0933 -1.7250 -4.1366 23 1 0.1544 -1.7071 -3.6032 24 6 1.2315 -2.5084 -5.2627 25 7 2.3747 -2.5298 -5.9126 26 14 -0.2053 -3.5384 -5.8661 27 1 -1.0174 -2.7434 -6.8219 28 1 0.3085 -4.7548 -6.5454 29 1 -1.0492 -3.9358 -4.7106 30 1 -0.3634 0.3991 -0.9470 31 1 -0.3633 -1.0197 0.1280 32 1 -0.3633 0.6207 0.8191 33 1 3.9868 -1.9955 2.5367 34 1 4.7844 -0.4575 2.9458 35 1 3.9158 -2.6036 4.9356 36 1 5.5873 -2.2808 4.4159 37 1 4.5823 1.1661 7.2806 38 1 2.8299 1.5919 7.0632 39 1 4.0252 -0.9857 8.3127 40 1 2.4687 -0.1541 8.7444 41 1 1.4708 -0.6981 6.5717 42 1 2.6616 -2.0698 6.5835 43 1 1.8817 0.8869 4.8967 44 1 3.5019 1.2974 4.2815 45 1 2.0471 1.9301 -2.4733 46 1 0.7800 1.2748 -3.5378 47 1 0.5270 1.3203 -1.7765 48 1 2.5446 -0.1877 -4.4275 49 1 3.0941 -1.5454 -3.4162 50 1 2.4718 -3.0808 -6.7051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885657899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:20 Heat of formation + Delta-G solvation = -162.683559 kcal Electronic energy + Delta-G solvation = -30572.335302 eV Core-core repulsion = 26371.911371 eV Total energy + Delta-G solvation = -4200.423931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.26604 -41.34302 -40.47896 -37.80233 -37.20423 -36.72879 -35.09977 -34.84516 -32.99798 -30.76013 -29.67436 -27.74762 -27.29887 -26.71617 -25.91378 -24.43481 -24.33133 -22.81710 -21.26908 -20.47384 -20.06089 -19.05382 -18.70635 -18.19159 -17.54081 -17.44883 -17.06291 -17.01950 -16.54466 -16.26592 -16.04563 -15.81529 -15.45953 -15.16248 -14.89653 -14.71841 -14.44930 -14.29319 -14.09563 -14.04501 -13.67295 -13.62681 -13.33398 -13.23564 -13.08625 -12.88630 -12.76370 -12.63512 -12.61763 -12.39697 -12.21334 -12.07500 -11.97974 -11.88710 -11.78956 -11.73464 -11.71750 -11.44457 -10.94600 -10.65528 -10.64787 -10.34246 -9.54412 -8.24288 -6.39216 0.97237 1.24669 1.37135 1.40114 1.49807 1.57319 2.28909 2.41719 2.66873 3.05881 3.33122 3.35723 3.43891 3.54466 3.67337 3.71190 3.80544 3.82952 3.86461 3.99684 4.10880 4.21638 4.24489 4.34374 4.47241 4.54014 4.56283 4.62331 4.64192 4.71806 4.81405 4.83043 4.85453 4.91573 4.93672 4.96932 5.00739 5.09439 5.09718 5.16208 5.18346 5.28513 5.33576 5.43314 5.49819 5.76399 6.01528 6.29269 6.47545 6.60661 6.69592 7.17344 7.34139 8.83328 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.002266 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.960384 B =12355.624259 C =12703.266293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 H 0.118 0.882 4 O -0.341 6.341 5 C 0.465 3.535 6 O -0.523 6.523 7 C -0.074 4.074 8 H 0.131 0.869 9 C -0.149 4.149 10 C 0.067 3.933 11 O -0.371 6.371 12 C 0.084 3.916 13 C -0.124 4.124 14 C -0.130 4.130 15 C -0.162 4.162 16 C -0.111 4.111 17 C 0.500 3.500 18 O -0.577 6.577 19 N -0.600 5.600 20 C 0.061 3.939 21 C 0.259 3.741 22 C -0.543 4.543 23 H 0.058 0.942 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.970 3.030 27 H -0.263 1.263 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.029 0.971 49 H 0.000 1.000 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 7.988 26.244 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.136 0.864 4 O -0.256 6.256 5 C 0.309 3.691 6 O -0.412 6.412 7 C -0.093 4.093 8 H 0.149 0.851 9 C -0.187 4.187 10 C -0.010 4.010 11 O -0.290 6.290 12 C 0.044 3.956 13 C -0.161 4.161 14 C -0.168 4.168 15 C -0.200 4.200 16 C -0.148 4.148 17 C 0.287 3.713 18 O -0.457 6.457 19 N -0.332 5.332 20 C -0.081 4.081 21 C 0.138 3.862 22 C -0.582 4.582 23 H 0.076 0.924 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.794 3.206 27 H -0.188 1.188 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.115 0.885 48 H 0.047 0.953 49 H 0.018 0.982 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.962 7.781 26.165 27.368 hybrid contribution -0.392 -0.631 -1.348 1.539 sum -2.354 7.150 24.817 25.933 Atomic orbital electron populations 1.22295 0.89827 1.04315 1.05593 1.22517 0.97481 0.96885 0.81032 0.86428 1.86647 1.76661 1.42328 1.20008 1.24357 0.73318 0.85776 0.85617 1.90617 1.48979 1.17130 1.84463 1.21240 0.99504 1.00161 0.88430 0.85135 1.22176 0.94385 1.01588 1.00512 1.22660 1.03353 0.89636 0.85308 1.87906 1.30810 1.51981 1.58316 1.22429 0.85603 0.94777 0.92798 1.23020 1.03097 0.97066 0.92959 1.22789 1.00699 0.96751 0.96539 1.23582 0.99570 1.00356 0.96486 1.21959 1.02936 0.96575 0.93363 1.20639 0.79797 0.85697 0.85137 1.90652 1.44139 1.24146 1.86757 1.48054 1.60667 1.18856 1.05660 1.22298 0.99274 0.81617 1.04910 1.18862 0.95037 0.91173 0.81122 1.21680 0.98675 1.26924 1.10897 0.92371 1.25888 0.98949 0.97775 0.96620 1.70059 1.26146 1.41115 1.19452 0.85378 0.78736 0.78073 0.78411 1.18753 1.20784 1.19573 0.88022 0.91532 0.88694 0.89682 0.91693 0.90982 0.86981 0.91035 0.87348 0.90372 0.89801 0.87939 0.90758 0.88643 0.91556 0.91047 0.90109 0.88480 0.95255 0.98233 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 9.14 71.98 0.66 -3.57 16 2 C 0.08 2.57 2.16 29.85 0.06 2.63 16 3 H 0.12 3.44 6.73 -2.38 -0.02 3.43 16 4 O -0.34 -11.14 9.37 -45.10 -0.42 -11.57 16 5 C 0.47 12.61 7.23 71.24 0.52 13.12 16 6 O -0.52 -15.36 15.15 21.95 0.33 -15.02 16 7 C -0.07 -1.49 2.64 -11.38 -0.03 -1.52 16 8 H 0.13 2.10 8.11 -2.39 -0.02 2.08 16 9 C -0.15 -3.05 5.30 30.66 0.16 -2.89 16 10 C 0.07 1.09 6.73 71.99 0.48 1.58 16 11 O -0.37 -7.06 10.45 -148.98 -1.56 -8.61 16 12 C 0.08 1.29 1.03 -10.58 -0.01 1.28 16 13 C -0.12 -1.57 7.46 31.01 0.23 -1.34 16 14 C -0.13 -1.43 8.04 31.23 0.25 -1.18 16 15 C -0.16 -1.90 7.12 31.09 0.22 -1.68 16 16 C -0.11 -1.94 3.90 30.64 0.12 -1.82 16 17 C 0.50 21.79 7.03 87.65 0.62 22.41 16 18 O -0.58 -31.08 16.08 15.64 0.25 -30.83 16 19 N -0.60 -25.72 2.86 -851.14 -2.43 -28.16 16 20 C 0.06 1.80 9.80 127.77 1.25 3.05 16 21 C 0.26 13.96 5.18 85.63 0.44 14.41 16 22 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 23 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 24 C 0.01 0.39 5.46 84.65 0.46 0.85 16 25 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 26 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 27 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 29 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 30 H 0.10 2.41 5.46 -2.39 -0.01 2.40 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 0.97 7.21 -2.39 -0.02 0.95 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.06 8.09 -2.38 -0.02 1.04 16 39 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.95 8.02 -2.39 -0.02 0.93 16 42 H 0.07 0.88 7.26 -2.39 -0.02 0.86 16 43 H 0.10 1.45 8.04 -2.39 -0.02 1.43 16 44 H 0.07 1.39 7.97 -2.38 -0.02 1.37 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 47 H 0.10 2.26 4.31 -2.39 -0.01 2.25 16 48 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 49 H 0.00 -0.03 7.36 -2.39 -0.02 -0.05 16 50 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -76.41 399.72 5.09 -71.32 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.93 Total: 17.39 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 5.68 Total: 14.72 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.15 Total: -83.70 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -1.40 Total: -66.04 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -76.41 5.09 -71.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885657899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.361 kcal (2) G-P(sol) polarization free energy of solvation -76.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds