Wall clock time and date at job start Tue Mar 31 2020 23:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99537 * 2 1 4 4 O 1.20820 * 120.00161 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99712 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46283 * 60.02792 * 5 3 2 7 7 C 1.53036 * 109.46241 * 300.06818 * 5 3 2 8 8 C 1.53622 * 109.24613 * 178.49235 * 7 5 3 9 9 N 1.46931 * 108.54424 * 54.85288 * 8 7 5 10 10 C 1.34777 * 120.63086 * 126.36867 * 9 8 7 11 11 O 1.21283 * 119.99750 * 179.72075 * 10 9 8 12 12 C 1.50702 * 119.99928 * 0.02562 * 10 9 8 13 13 C 1.52996 * 109.47159 * 179.72352 * 12 10 9 14 14 C 1.50697 * 109.47491 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99437 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00278 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00172 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00140 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47213 * 89.99904 * 18 16 14 20 20 H 1.48497 * 109.47216 * 209.99799 * 18 16 14 21 21 H 1.48504 * 109.47159 * 330.00245 * 18 16 14 22 22 C 1.46925 * 118.73924 * 306.09826 * 9 8 7 23 23 H 1.08994 * 109.58707 * 173.64258 * 22 9 8 24 24 C 1.53004 * 109.58895 * 293.93034 * 22 9 8 25 25 H 1.08999 * 110.32971 * 62.24826 * 24 22 9 26 26 C 1.54473 * 110.36731 * 299.99883 * 24 22 9 27 27 C 1.54505 * 104.06152 * 217.18585 * 26 24 22 28 28 C 1.54477 * 104.06253 * 0.02562 * 27 26 24 29 29 O 1.44416 * 110.37359 * 184.61900 * 24 22 9 30 30 C 1.53046 * 109.46030 * 179.97438 * 5 3 2 31 31 H 1.09004 * 109.47124 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47225 * 299.99760 * 1 2 3 33 33 H 1.08999 * 109.47552 * 60.00286 * 1 2 3 34 34 H 1.09003 * 109.49561 * 298.56695 * 7 5 3 35 35 H 1.08998 * 109.49977 * 58.66070 * 7 5 3 36 36 H 1.09000 * 109.74013 * 295.12181 * 8 7 5 37 37 H 1.08995 * 109.66828 * 174.54938 * 8 7 5 38 38 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 39 39 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 40 40 H 1.09004 * 109.47066 * 299.99797 * 13 12 10 41 41 H 1.09000 * 109.47234 * 59.99288 * 13 12 10 42 42 H 0.96998 * 120.00586 * 180.02562 * 17 16 14 43 43 H 1.09001 * 110.51850 * 335.83521 * 26 24 22 44 44 H 1.09006 * 110.51386 * 98.54543 * 26 24 22 45 45 H 1.08998 * 110.51106 * 118.64613 * 27 26 24 46 46 H 1.09005 * 110.51605 * 241.21919 * 27 26 24 47 47 H 1.09008 * 110.37368 * 142.80747 * 28 27 26 48 48 H 1.09000 * 110.37513 * 265.03518 * 28 27 26 49 49 H 1.08997 * 109.49431 * 61.43144 * 30 5 3 50 50 H 1.09003 * 109.49524 * 301.33650 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9561 0.7811 -0.8894 7 6 4.1128 0.5800 1.2497 8 6 5.6480 0.6302 1.2263 9 7 6.0676 2.0311 1.0833 10 6 6.9338 2.5811 1.9571 11 8 7.2763 3.7371 1.8252 12 6 7.4822 1.7577 3.0940 13 6 8.4405 2.6118 3.9263 14 6 8.9884 1.7887 5.0636 15 1 8.6831 0.7594 5.1811 16 6 9.8793 2.3496 5.9539 17 7 10.3578 1.6310 6.9461 18 14 10.4078 4.1296 5.7501 19 1 9.4812 5.0106 6.5054 20 1 11.7877 4.2991 6.2719 21 1 10.3745 4.4942 4.3109 22 6 5.5295 2.8191 -0.0339 23 1 5.8458 3.8574 0.0656 24 6 6.0447 2.2506 -1.3577 25 1 5.6975 1.2260 -1.4905 26 6 7.5879 2.3056 -1.4021 27 6 7.9089 2.6557 -2.8723 28 6 6.5217 2.7715 -3.5421 29 8 5.6142 3.0768 -2.4612 30 6 3.9998 2.7427 -0.0002 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.7432 1.0886 2.1401 35 1 3.7841 -0.4592 1.2611 36 1 6.0226 0.0489 0.3838 37 1 6.0426 0.2239 2.1575 38 1 6.6609 1.4150 3.7234 39 1 8.0171 0.8965 2.6938 40 1 9.2618 2.9546 3.2969 41 1 7.9056 3.4731 4.3264 42 1 10.9842 2.0257 7.5727 43 1 7.9619 3.0816 -0.7342 44 1 8.0123 1.3367 -1.1389 45 1 8.4415 3.6048 -2.9313 46 1 8.4941 1.8611 -3.3353 47 1 6.5212 3.5764 -4.2773 48 1 6.2480 1.8277 -4.0137 49 1 3.6313 3.2314 0.9017 50 1 3.5908 3.2424 -0.8783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886380567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:34 Heat of formation + Delta-G solvation = -177.008520 kcal Electronic energy + Delta-G solvation = -31255.808699 eV Core-core repulsion = 27054.763592 eV Total energy + Delta-G solvation = -4201.045108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.23889 -40.29168 -39.04065 -37.44176 -36.59632 -33.64019 -33.29235 -32.37132 -32.08463 -31.02490 -28.73585 -28.30528 -26.58627 -25.45192 -23.71304 -23.00122 -21.89817 -21.48136 -21.02423 -19.76357 -18.59633 -18.06565 -17.42939 -16.99543 -16.58228 -16.41555 -16.26973 -15.99911 -15.60765 -15.15427 -14.77403 -14.44155 -14.20257 -14.05166 -13.98178 -13.82399 -13.37037 -13.21724 -13.10139 -12.79278 -12.59336 -12.54198 -12.32880 -12.13624 -11.91064 -11.86825 -11.54616 -11.43392 -11.14323 -11.09736 -11.01052 -10.93566 -10.87877 -10.67645 -10.58442 -10.15499 -10.05608 -9.94526 -9.80007 -9.26810 -9.17213 -8.62829 -8.51746 -6.04573 -4.03485 1.93723 2.39996 2.89410 3.01429 3.37164 3.43954 3.54367 3.81935 4.16952 4.35603 4.44608 4.46364 4.49669 4.53671 4.73397 4.77488 4.79039 4.84706 4.87838 4.91032 4.99618 5.06118 5.15354 5.20574 5.27623 5.31099 5.36678 5.41068 5.42205 5.50222 5.58918 5.63189 5.70451 5.81306 5.85102 5.89002 5.99210 6.00757 6.03633 6.05766 6.13048 6.48425 6.62384 6.72411 7.34165 7.40726 7.47502 7.53769 7.77238 8.45731 8.56055 8.98082 9.58594 11.08183 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.003330 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.255607 B = 8405.138378 C =10240.106203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.503 6.503 5 C -0.079 4.079 6 H 0.110 0.890 7 C -0.128 4.128 8 C 0.107 3.893 9 N -0.617 5.617 10 C 0.516 3.484 11 O -0.533 6.533 12 C -0.121 4.121 13 C 0.002 3.998 14 C -0.525 4.525 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.150 3.850 23 H 0.113 0.887 24 C 0.067 3.933 25 H 0.070 0.930 26 C -0.148 4.148 27 C -0.155 4.155 28 C 0.046 3.954 29 O -0.367 6.367 30 C -0.109 4.109 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -5.932 -21.270 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.390 6.390 5 C -0.098 4.098 6 H 0.128 0.872 7 C -0.166 4.166 8 C -0.016 4.016 9 N -0.353 5.353 10 C 0.307 3.693 11 O -0.409 6.409 12 C -0.160 4.160 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 C 0.046 3.954 23 H 0.131 0.869 24 C 0.008 3.992 25 H 0.088 0.912 26 C -0.186 4.186 27 C -0.193 4.193 28 C -0.031 4.031 29 O -0.285 6.285 30 C -0.147 4.147 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.525 -4.832 -21.170 26.693 hybrid contribution 0.185 0.640 -0.083 0.671 sum -15.339 -4.192 -21.253 26.543 Atomic orbital electron populations 1.23268 0.76400 1.03683 1.02566 1.86508 1.23379 1.33532 1.84114 1.23817 0.91982 0.81289 0.72048 1.90677 1.67126 1.36386 1.44813 1.21141 0.86879 0.99813 1.01973 0.87211 1.22049 0.96231 1.01761 0.96590 1.21853 0.93346 0.82488 1.03893 1.48279 1.46789 1.12395 1.27851 1.21591 0.76869 0.88100 0.82735 1.90660 1.58226 1.18041 1.73941 1.21706 1.00778 0.99510 0.94039 1.19378 0.94151 0.95261 0.94848 1.21090 1.26042 0.99525 1.09583 0.90935 1.24962 0.95615 0.97814 0.94796 1.69908 1.31937 1.36749 1.15627 0.86809 0.77765 0.85581 0.79470 1.20239 1.21472 1.18535 1.20937 0.92077 0.98152 0.84271 0.86877 1.23309 0.93923 0.94414 0.87577 0.91202 1.22935 0.95326 1.03412 0.96913 1.22937 0.97860 1.02756 0.95742 1.23386 0.88260 1.00903 0.90522 1.89107 1.53511 1.63924 1.21966 1.21810 0.94721 0.93420 1.04733 0.88065 0.91858 0.91970 0.90331 0.89128 0.91120 0.87855 0.89529 0.89520 0.95844 0.96275 0.92709 0.89735 0.90530 0.90626 0.90630 0.89122 0.92420 0.90227 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.35 10.44 -39.26 -0.41 -3.76 16 3 C 0.47 5.07 7.26 36.01 0.26 5.33 16 4 O -0.50 -6.95 15.73 -18.75 -0.29 -7.25 16 5 C -0.08 -0.74 2.39 -91.73 -0.22 -0.96 16 6 H 0.11 0.86 6.47 -51.93 -0.34 0.52 16 7 C -0.13 -1.09 5.31 -26.39 -0.14 -1.23 16 8 C 0.11 1.00 5.98 -3.48 -0.02 0.98 16 9 N -0.62 -7.89 2.31 -164.95 -0.38 -8.28 16 10 C 0.52 8.93 7.70 -10.98 -0.08 8.84 16 11 O -0.53 -11.31 15.40 5.55 0.09 -11.23 16 12 C -0.12 -2.22 3.98 -27.88 -0.11 -2.33 16 13 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 14 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 22 C 0.15 1.85 2.26 -67.60 -0.15 1.70 16 23 H 0.11 1.72 7.00 -51.93 -0.36 1.36 16 24 C 0.07 0.71 2.45 -25.96 -0.06 0.65 16 25 H 0.07 0.63 5.85 -51.93 -0.30 0.33 16 26 C -0.15 -1.64 6.28 -25.17 -0.16 -1.80 16 27 C -0.16 -1.40 7.09 -25.17 -0.18 -1.58 16 28 C 0.05 0.40 7.63 37.93 0.29 0.69 16 29 O -0.37 -4.23 10.88 -35.23 -0.38 -4.61 16 30 C -0.11 -1.24 4.09 -26.61 -0.11 -1.35 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 37 H 0.10 0.96 5.94 -51.93 -0.31 0.65 16 38 H 0.09 1.47 7.70 -51.93 -0.40 1.07 16 39 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 40 H 0.02 0.59 7.15 -51.93 -0.37 0.22 16 41 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 48 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 50 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -35.15 392.85 -7.82 -42.97 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.32 Total: -1.72 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.14 Total: -2.87 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.39 Total: -35.20 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.00 Total: -26.85 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.15 -7.82 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886380567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.039 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds