Wall clock time and date at job start Tue Mar 31 2020 23:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99537 * 2 1 4 4 O 1.20820 * 120.00161 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99712 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46283 * 60.02792 * 5 3 2 7 7 C 1.53036 * 109.46241 * 300.06818 * 5 3 2 8 8 C 1.53622 * 109.24613 * 178.49235 * 7 5 3 9 9 N 1.46931 * 108.54424 * 54.85288 * 8 7 5 10 10 C 1.34777 * 120.63086 * 126.36867 * 9 8 7 11 11 O 1.21283 * 119.99750 * 179.72075 * 10 9 8 12 12 C 1.50702 * 119.99928 * 0.02562 * 10 9 8 13 13 C 1.52996 * 109.47159 * 179.72352 * 12 10 9 14 14 C 1.50697 * 109.47491 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99437 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00278 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00172 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00140 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47213 * 89.99904 * 18 16 14 20 20 H 1.48497 * 109.47216 * 209.99799 * 18 16 14 21 21 H 1.48504 * 109.47159 * 330.00245 * 18 16 14 22 22 C 1.46925 * 118.73924 * 306.09826 * 9 8 7 23 23 H 1.08994 * 109.58707 * 173.64258 * 22 9 8 24 24 C 1.53004 * 109.58895 * 293.93034 * 22 9 8 25 25 H 1.08999 * 110.32971 * 62.24826 * 24 22 9 26 26 C 1.54473 * 110.36731 * 299.99883 * 24 22 9 27 27 C 1.54505 * 104.06152 * 217.18585 * 26 24 22 28 28 C 1.54477 * 104.06253 * 0.02562 * 27 26 24 29 29 O 1.44416 * 110.37359 * 184.61900 * 24 22 9 30 30 C 1.53046 * 109.46030 * 179.97438 * 5 3 2 31 31 H 1.09004 * 109.47124 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47225 * 299.99760 * 1 2 3 33 33 H 1.08999 * 109.47552 * 60.00286 * 1 2 3 34 34 H 1.09003 * 109.49561 * 298.56695 * 7 5 3 35 35 H 1.08998 * 109.49977 * 58.66070 * 7 5 3 36 36 H 1.09000 * 109.74013 * 295.12181 * 8 7 5 37 37 H 1.08995 * 109.66828 * 174.54938 * 8 7 5 38 38 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 39 39 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 40 40 H 1.09004 * 109.47066 * 299.99797 * 13 12 10 41 41 H 1.09000 * 109.47234 * 59.99288 * 13 12 10 42 42 H 0.96998 * 120.00586 * 180.02562 * 17 16 14 43 43 H 1.09001 * 110.51850 * 335.83521 * 26 24 22 44 44 H 1.09006 * 110.51386 * 98.54543 * 26 24 22 45 45 H 1.08998 * 110.51106 * 118.64613 * 27 26 24 46 46 H 1.09005 * 110.51605 * 241.21919 * 27 26 24 47 47 H 1.09008 * 110.37368 * 142.80747 * 28 27 26 48 48 H 1.09000 * 110.37513 * 265.03518 * 28 27 26 49 49 H 1.08997 * 109.49431 * 61.43144 * 30 5 3 50 50 H 1.09003 * 109.49524 * 301.33650 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9561 0.7811 -0.8894 7 6 4.1128 0.5800 1.2497 8 6 5.6480 0.6302 1.2263 9 7 6.0676 2.0311 1.0833 10 6 6.9338 2.5811 1.9571 11 8 7.2763 3.7371 1.8252 12 6 7.4822 1.7577 3.0940 13 6 8.4405 2.6118 3.9263 14 6 8.9884 1.7887 5.0636 15 1 8.6831 0.7594 5.1811 16 6 9.8793 2.3496 5.9539 17 7 10.3578 1.6310 6.9461 18 14 10.4078 4.1296 5.7501 19 1 9.4812 5.0106 6.5054 20 1 11.7877 4.2991 6.2719 21 1 10.3745 4.4942 4.3109 22 6 5.5295 2.8191 -0.0339 23 1 5.8458 3.8574 0.0656 24 6 6.0447 2.2506 -1.3577 25 1 5.6975 1.2260 -1.4905 26 6 7.5879 2.3056 -1.4021 27 6 7.9089 2.6557 -2.8723 28 6 6.5217 2.7715 -3.5421 29 8 5.6142 3.0768 -2.4612 30 6 3.9998 2.7427 -0.0002 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.7432 1.0886 2.1401 35 1 3.7841 -0.4592 1.2611 36 1 6.0226 0.0489 0.3838 37 1 6.0426 0.2239 2.1575 38 1 6.6609 1.4150 3.7234 39 1 8.0171 0.8965 2.6938 40 1 9.2618 2.9546 3.2969 41 1 7.9056 3.4731 4.3264 42 1 10.9842 2.0257 7.5727 43 1 7.9619 3.0816 -0.7342 44 1 8.0123 1.3367 -1.1389 45 1 8.4415 3.6048 -2.9313 46 1 8.4941 1.8611 -3.3353 47 1 6.5212 3.5764 -4.2773 48 1 6.2480 1.8277 -4.0137 49 1 3.6313 3.2314 0.9017 50 1 3.5908 3.2424 -0.8783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886380567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:32 Heat of formation + Delta-G solvation = -199.422416 kcal Electronic energy + Delta-G solvation = -31256.780639 eV Core-core repulsion = 27054.763592 eV Total energy + Delta-G solvation = -4202.017047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15516 -41.23517 -40.06683 -38.45058 -37.47903 -35.58422 -34.36775 -33.63804 -32.90638 -32.63794 -29.58004 -28.98354 -28.17143 -26.52818 -24.62712 -23.80663 -23.37238 -22.42566 -21.93196 -21.00932 -19.66646 -19.23774 -18.77723 -18.15537 -17.57960 -17.28100 -17.18462 -17.03006 -16.68356 -16.27951 -16.14908 -15.88563 -15.19412 -15.09341 -14.81528 -14.75531 -14.63314 -14.49208 -14.34872 -14.01910 -13.76977 -13.51770 -13.37152 -13.28096 -12.91505 -12.84914 -12.80694 -12.66498 -12.27169 -12.07548 -11.97285 -11.91134 -11.85161 -11.78335 -11.75916 -11.71412 -11.47764 -11.44951 -11.35455 -10.77273 -10.75799 -10.66259 -9.69502 -8.30538 -6.32420 1.11257 1.32380 1.34961 1.49360 1.60290 1.73052 1.84208 2.35046 3.00254 3.05594 3.29683 3.54673 3.66732 3.69168 3.70674 3.83012 3.97350 3.98849 4.14571 4.17480 4.24668 4.32032 4.33317 4.34613 4.38118 4.46326 4.48828 4.54021 4.61322 4.67187 4.74001 4.74190 4.81796 4.86920 4.93096 4.97963 5.00534 5.07653 5.11301 5.15449 5.19466 5.35026 5.36156 5.45686 5.55248 5.62083 5.88578 6.24552 6.36852 6.68021 6.74087 7.22023 7.33013 8.84929 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.003330 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.255607 B = 8405.138378 C =10240.106203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.469 3.531 4 O -0.541 6.541 5 C -0.073 4.073 6 H 0.137 0.863 7 C -0.121 4.121 8 C 0.098 3.902 9 N -0.603 5.603 10 C 0.518 3.482 11 O -0.584 6.584 12 C -0.112 4.112 13 C 0.005 3.995 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.016 3.984 17 N -0.942 5.942 18 Si 0.933 3.067 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.263 1.263 22 C 0.152 3.848 23 H 0.075 0.925 24 C 0.074 3.926 25 H 0.101 0.899 26 C -0.151 4.151 27 C -0.152 4.152 28 C 0.043 3.957 29 O -0.390 6.390 30 C -0.100 4.100 31 H 0.134 0.866 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.009 0.991 41 H 0.003 0.997 42 H 0.267 0.733 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.056 0.944 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 -8.160 -23.403 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.313 3.687 4 O -0.430 6.430 5 C -0.092 4.092 6 H 0.155 0.845 7 C -0.159 4.159 8 C -0.023 4.023 9 N -0.337 5.337 10 C 0.309 3.691 11 O -0.463 6.463 12 C -0.152 4.152 13 C -0.033 4.033 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.182 4.182 17 N -0.583 5.583 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.187 1.187 22 C 0.048 3.952 23 H 0.093 0.907 24 C 0.016 3.984 25 H 0.119 0.881 26 C -0.189 4.189 27 C -0.190 4.190 28 C -0.033 4.033 29 O -0.308 6.308 30 C -0.139 4.139 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.027 0.973 41 H 0.022 0.978 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.075 0.925 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.467 -7.116 -23.329 29.429 hybrid contribution 0.376 1.265 0.550 1.430 sum -16.091 -5.851 -22.780 28.497 Atomic orbital electron populations 1.23543 0.75027 1.05753 1.02279 1.86495 1.24710 1.32370 1.83530 1.24035 0.92424 0.81213 0.71000 1.90673 1.67990 1.37689 1.46680 1.21129 0.86195 0.98179 1.03651 0.84505 1.22036 0.95304 1.03206 0.95358 1.22253 0.94042 0.80216 1.05786 1.48164 1.44963 1.13867 1.26693 1.21301 0.77495 0.87226 0.83097 1.90646 1.60411 1.20029 1.75220 1.21523 1.00360 0.99120 0.94176 1.19226 0.94747 0.95124 0.94200 1.21411 1.25345 0.99143 1.10253 0.92652 1.25731 0.96114 1.01534 0.94797 1.70009 1.33088 1.38493 1.16720 0.85915 0.77858 0.81216 0.79220 1.19732 1.20406 1.18720 1.20863 0.92590 0.96433 0.85282 0.90683 1.23276 0.93477 0.95389 0.86284 0.88122 1.22923 0.95691 1.02718 0.97563 1.22940 0.98482 1.03076 0.94477 1.23596 0.87292 1.02547 0.89881 1.89092 1.54337 1.64627 1.22793 1.21646 0.93723 0.95233 1.03260 0.84813 0.92439 0.92086 0.91836 0.86057 0.87617 0.87332 0.87865 0.87302 0.97308 0.97825 0.92437 0.93628 0.89238 0.91649 0.88370 0.88228 0.89986 0.92521 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.62 10.44 -51.43 -0.54 -6.16 16 3 C 0.47 9.33 7.26 71.24 0.52 9.85 16 4 O -0.54 -14.71 15.73 21.98 0.35 -14.37 16 5 C -0.07 -1.17 2.39 -11.51 -0.03 -1.20 16 6 H 0.14 1.52 6.47 -2.39 -0.02 1.50 16 7 C -0.12 -1.66 5.31 30.82 0.16 -1.50 16 8 C 0.10 1.49 5.98 86.51 0.52 2.01 16 9 N -0.60 -14.77 2.31 -794.18 -1.83 -16.61 16 10 C 0.52 17.96 7.70 87.66 0.67 18.63 16 11 O -0.58 -25.77 15.40 -3.04 -0.05 -25.82 16 12 C -0.11 -4.04 3.98 29.85 0.12 -3.92 16 13 C 0.01 0.24 3.33 29.85 0.10 0.34 16 14 C -0.52 -29.52 9.66 25.60 0.25 -29.28 16 15 H 0.06 3.24 7.99 -2.91 -0.02 3.22 16 16 C 0.02 0.94 5.47 84.65 0.46 1.40 16 17 N -0.94 -58.37 13.96 21.44 0.30 -58.07 16 18 Si 0.93 46.80 27.47 68.60 1.88 48.69 16 19 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.26 -13.16 6.54 99.48 0.65 -12.51 16 22 C 0.15 3.74 2.26 44.98 0.10 3.84 16 23 H 0.07 2.45 7.00 -2.39 -0.02 2.43 16 24 C 0.07 1.44 2.45 31.10 0.08 1.52 16 25 H 0.10 1.36 5.85 -2.39 -0.01 1.34 16 26 C -0.15 -3.16 6.28 31.61 0.20 -2.96 16 27 C -0.15 -2.45 7.09 31.61 0.22 -2.23 16 28 C 0.04 0.64 7.63 72.48 0.55 1.19 16 29 O -0.39 -8.40 10.88 -148.98 -1.62 -10.02 16 30 C -0.10 -2.26 4.09 30.67 0.13 -2.13 16 31 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 33 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.12 1.03 8.08 -2.39 -0.02 1.01 16 36 H 0.11 0.98 7.56 -2.39 -0.02 0.96 16 37 H 0.11 1.62 5.94 -2.39 -0.01 1.61 16 38 H 0.10 3.35 7.70 -2.38 -0.02 3.34 16 39 H 0.11 3.41 7.93 -2.39 -0.02 3.39 16 40 H 0.01 0.44 7.15 -2.38 -0.02 0.43 16 41 H 0.00 0.17 7.53 -2.39 -0.02 0.16 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.04 1.32 7.87 -2.39 -0.02 1.30 16 44 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 50 H 0.08 1.99 7.69 -2.39 -0.02 1.97 16 Total: -1.00 -79.74 392.85 4.61 -75.13 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.87 Total: 10.14 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.25 Total: -2.91 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.53 Total: -74.68 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -1.86 Total: -56.36 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.88 Total: 48.69 kcal Total: -79.74 4.61 -75.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886380567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.293 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds