Wall clock time and date at job start Tue Mar 31 2020 22:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47399 * 239.99402 * 2 1 3 5 5 N 1.46498 * 109.46878 * 65.00205 * 4 2 1 6 6 C 1.34777 * 119.99909 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99976 * 179.97438 * 6 5 4 9 9 C 1.40138 * 120.00256 * 185.45282 * 8 6 5 10 10 C 1.38694 * 120.07196 * 24.42823 * 9 8 6 11 11 C 1.38201 * 120.01754 * 179.69940 * 10 9 8 12 12 C 1.38538 * 120.17705 * 0.60393 * 11 10 9 13 13 F 1.35102 * 119.92726 * 179.69824 * 12 11 10 14 14 C 1.38343 * 120.15224 * 359.67416 * 12 11 10 15 15 C 1.38741 * 119.97492 * 0.02562 * 14 12 11 16 16 O 1.35777 * 120.08826 * 180.02562 * 15 14 12 17 17 C 1.34807 * 117.00146 * 5.73607 * 16 15 14 18 18 H 1.08003 * 119.99850 * 5.39043 * 17 16 15 19 19 C 1.38631 * 120.00281 * 185.39103 * 17 16 15 20 20 N 1.31573 * 119.99872 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00181 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47129 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47013 * 120.00265 * 21 19 17 24 24 H 1.48496 * 109.47431 * 240.00244 * 21 19 17 25 25 C 1.53000 * 109.46942 * 119.99402 * 2 1 3 26 26 N 1.46908 * 109.46984 * 185.29394 * 25 2 1 27 27 C 1.46901 * 110.99878 * 71.58774 * 26 25 2 28 28 C 1.46903 * 110.99705 * 195.53921 * 26 25 2 29 29 H 1.08995 * 109.47358 * 295.00366 * 1 2 3 30 30 H 1.08995 * 109.46845 * 55.00157 * 1 2 3 31 31 H 1.08999 * 109.46999 * 174.99591 * 1 2 3 32 32 H 1.09000 * 109.47318 * 184.99853 * 4 2 1 33 33 H 1.09000 * 109.47346 * 305.00090 * 4 2 1 34 34 H 0.97005 * 120.00074 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00149 * 5.45271 * 8 6 5 36 36 H 1.08001 * 119.98891 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.91187 * 180.29758 * 11 10 9 38 38 H 1.08001 * 120.01781 * 180.02562 * 14 12 11 39 39 H 0.97006 * 119.99975 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47392 * 305.29564 * 25 2 1 41 41 H 1.08998 * 109.47048 * 65.30030 * 25 2 1 42 42 H 1.09005 * 109.47235 * 64.88822 * 27 26 25 43 43 H 1.08995 * 109.47402 * 184.89116 * 27 26 25 44 44 H 1.09001 * 109.46726 * 304.89063 * 27 26 25 45 45 H 1.08995 * 109.47059 * 60.00180 * 28 26 25 46 46 H 1.08998 * 109.46812 * 180.02562 * 28 26 25 47 47 H 1.09004 * 109.46991 * 299.99600 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6525 0.0352 -2.4423 6 6 1.9966 -0.4134 -3.6658 7 8 2.6282 -1.4461 -3.7794 8 7 1.6397 0.2824 -4.7636 9 6 1.8964 -0.2399 -6.0384 10 6 2.0304 -1.6091 -6.2144 11 6 2.2775 -2.1234 -7.4732 12 6 2.4044 -1.2737 -8.5600 13 9 2.6519 -1.7815 -9.7873 14 6 2.2778 0.0936 -8.3917 15 6 2.0236 0.6163 -7.1319 16 8 1.8983 1.9578 -6.9641 17 6 1.9130 2.7179 -8.0774 18 1 1.9332 2.2499 -9.0505 19 6 1.9023 4.1002 -7.9732 20 7 1.8783 4.6704 -6.7876 21 14 1.9220 5.1534 -9.5158 22 1 1.9476 4.2762 -10.7137 23 1 0.7044 6.0028 -9.5508 24 1 3.1290 6.0184 -9.5094 25 6 2.0399 -0.7211 1.2493 26 7 3.5034 -0.6114 1.3149 27 6 3.9141 0.7580 1.6525 28 6 4.0616 -1.5788 2.2693 29 1 -0.3634 0.4343 0.9313 30 1 -0.3633 0.5894 -0.8418 31 1 -0.3633 -1.0237 -0.0896 32 1 3.1264 -0.7996 -1.2055 33 1 1.6055 -1.7199 -1.2950 34 1 1.1483 0.8589 -2.3518 35 1 1.2050 1.1446 -4.6712 36 1 1.9373 -2.2738 -5.3684 37 1 2.3768 -3.1902 -7.6091 38 1 2.3767 0.7540 -9.2405 39 1 1.8712 5.6377 -6.7147 40 1 1.6012 -0.2649 2.1368 41 1 1.7562 -1.7725 1.2032 42 1 3.5727 1.0022 2.6585 43 1 5.0006 0.8326 1.6095 44 1 3.4735 1.4554 0.9400 45 1 3.8005 -2.5897 1.9565 46 1 5.1463 -1.4758 2.2985 47 1 3.6520 -1.3881 3.2613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887888359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:52 Heat of formation + Delta-G solvation = -89.579169 kcal Electronic energy + Delta-G solvation = -29261.972544 eV Core-core repulsion = 24973.551103 eV Total energy + Delta-G solvation = -4288.421440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.79311 -41.75796 -40.44981 -39.15393 -38.05246 -36.44409 -35.54095 -34.28848 -33.62218 -31.04692 -29.91585 -28.46812 -27.87017 -27.42248 -26.85788 -24.13889 -23.36740 -22.96939 -21.88912 -21.06292 -20.12975 -19.66190 -19.08666 -18.32189 -17.12418 -17.04161 -16.85747 -16.59691 -16.49899 -16.30897 -16.00880 -15.90921 -15.54431 -15.43883 -15.34830 -15.21096 -14.79696 -14.71433 -14.04044 -13.86418 -13.77660 -13.69794 -13.41720 -13.21363 -13.11730 -12.97320 -12.66355 -12.58797 -12.57022 -12.32087 -12.11465 -12.01439 -11.92338 -11.66028 -11.48355 -11.34334 -10.99886 -10.81586 -10.07721 -9.51608 -9.23819 -8.64662 -8.49649 -6.15018 0.24935 0.48674 1.38163 1.43769 1.54097 1.64943 2.06512 2.15252 2.73418 3.04280 3.06197 3.16836 3.24885 3.48406 3.77705 3.95803 3.99399 4.14200 4.18563 4.30464 4.39135 4.45182 4.53218 4.57915 4.62164 4.68151 4.77222 4.79764 4.87022 4.95451 4.99078 5.03246 5.05242 5.06352 5.11093 5.23510 5.26015 5.32625 5.36088 5.39640 5.55105 5.60467 5.94186 5.97809 6.10871 6.11717 6.14001 6.95330 6.97563 7.48822 7.65486 8.71280 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.002764 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.936419 B =10129.173214 C =12026.381919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.079 0.921 4 C 0.155 3.845 5 N -0.727 5.727 6 C 0.701 3.299 7 O -0.611 6.611 8 N -0.666 5.666 9 C 0.087 3.913 10 C -0.066 4.066 11 C -0.199 4.199 12 C 0.115 3.885 13 F -0.146 7.146 14 C -0.260 4.260 15 C 0.125 3.875 16 O -0.204 6.204 17 C -0.413 4.413 18 H 0.098 0.902 19 C -0.009 4.009 20 N -0.906 5.906 21 Si 1.011 2.989 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.271 1.271 25 C 0.065 3.935 26 N -0.568 5.568 27 C 0.022 3.978 28 C 0.026 3.974 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.407 0.593 35 H 0.414 0.586 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.274 0.726 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -7.971 16.376 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.097 0.903 4 C 0.031 3.969 5 N -0.383 5.383 6 C 0.402 3.598 7 O -0.492 6.492 8 N -0.312 5.312 9 C -0.009 4.009 10 C -0.086 4.086 11 C -0.219 4.219 12 C 0.095 3.905 13 F -0.124 7.124 14 C -0.280 4.280 15 C 0.072 3.928 16 O -0.110 6.110 17 C -0.489 4.489 18 H 0.116 0.884 19 C -0.209 4.209 20 N -0.543 5.543 21 Si 0.831 3.169 22 H -0.181 1.181 23 H -0.191 1.191 24 H -0.196 1.196 25 C -0.063 4.063 26 N -0.292 5.292 27 C -0.126 4.126 28 C -0.122 4.122 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.243 0.757 35 H 0.250 0.750 36 H 0.176 0.824 37 H 0.174 0.826 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.655 -8.672 16.176 18.428 hybrid contribution -0.415 1.627 -0.216 1.693 sum -2.070 -7.045 15.960 17.568 Atomic orbital electron populations 1.21824 0.93294 1.02609 1.02638 1.21339 0.96572 1.00054 0.93021 0.90319 1.21226 0.99921 0.94215 0.81525 1.45091 1.60299 1.29214 1.03716 1.16003 0.79527 0.83316 0.80987 1.90808 1.46123 1.26342 1.85944 1.42289 1.62473 1.23787 1.02677 1.16969 1.09625 0.91652 0.82647 1.21020 0.97764 0.92140 0.97724 1.20886 1.09684 1.00644 0.90651 1.17442 1.01754 0.91116 0.80181 1.91422 1.91959 1.87595 1.41455 1.20901 1.14198 0.94627 0.98312 1.19041 0.96167 0.84997 0.92617 1.83899 1.80526 1.11842 1.34684 1.21761 1.53565 0.88386 0.85212 0.88432 1.26359 0.95629 0.96825 1.02062 1.70128 1.47772 1.11551 1.24799 0.84620 0.78572 0.77638 0.76041 1.18071 1.19147 1.19573 1.22116 0.86749 1.01325 0.96108 1.61937 1.10573 1.05988 1.50670 1.22432 1.01446 0.89366 0.99352 1.22388 1.00397 0.96118 0.93322 0.91051 0.92438 0.92150 0.92265 0.92366 0.75690 0.74990 0.82410 0.82554 0.84655 0.91672 0.92904 0.90047 0.94781 0.91512 0.91515 0.91084 0.91303 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.01 71.98 0.65 -1.25 16 2 C -0.09 -1.41 2.44 -10.79 -0.03 -1.44 16 3 H 0.08 1.27 6.48 -2.38 -0.02 1.25 16 4 C 0.15 3.51 5.01 86.38 0.43 3.94 16 5 N -0.73 -19.01 5.33 -478.53 -2.55 -21.56 16 6 C 0.70 24.73 8.38 179.05 1.50 26.23 16 7 O -0.61 -24.84 13.48 -4.00 -0.05 -24.90 16 8 N -0.67 -25.38 5.30 -316.70 -1.68 -27.05 16 9 C 0.09 3.72 6.46 38.22 0.25 3.97 16 10 C -0.07 -2.54 8.72 22.37 0.20 -2.35 16 11 C -0.20 -7.16 10.02 22.33 0.22 -6.94 16 12 C 0.12 4.57 7.29 22.37 0.16 4.73 16 13 F -0.15 -5.44 17.26 44.97 0.78 -4.67 16 14 C -0.26 -11.63 9.11 22.42 0.20 -11.43 16 15 C 0.13 5.99 6.66 22.69 0.15 6.14 16 16 O -0.20 -11.11 9.17 -22.80 -0.21 -11.32 16 17 C -0.41 -22.55 9.44 67.91 0.64 -21.91 16 18 H 0.10 5.03 5.30 -2.91 -0.02 5.01 16 19 C -0.01 -0.49 5.49 84.83 0.47 -0.03 16 20 N -0.91 -50.93 13.67 21.61 0.30 -50.63 16 21 Si 1.01 40.91 29.55 68.60 2.03 42.94 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 C 0.07 0.91 4.36 86.30 0.38 1.29 16 26 N -0.57 -9.43 4.36 -948.82 -4.14 -13.57 16 27 C 0.02 0.33 9.44 127.69 1.21 1.54 16 28 C 0.03 0.34 9.54 127.69 1.22 1.56 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.80 7.31 -2.39 -0.02 0.78 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.63 7.63 -2.39 -0.02 1.61 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.41 8.86 7.70 -92.70 -0.71 8.14 16 35 H 0.41 15.35 8.36 -92.71 -0.78 14.58 16 36 H 0.16 5.95 5.75 -2.91 -0.02 5.93 16 37 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.14 6.15 5.71 -2.91 -0.02 6.13 16 39 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 40 H 0.05 0.62 8.06 -2.39 -0.02 0.60 16 41 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 42 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 45 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -66.56 388.95 1.64 -64.91 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.47 Total: 41.77 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 7.65 Total: 4.07 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -8.07 Total: -112.81 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.26 Total: -36.22 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.78 Total: -4.67 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -66.56 1.64 -64.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887888359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.667 kcal (2) G-P(sol) polarization free energy of solvation -66.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds