Wall clock time and date at job start Tue Mar 31 2020 23:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00154 * 2 1 4 4 O 1.20830 * 119.99633 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00120 * 179.72243 * 3 2 1 6 6 C 1.52995 * 112.84644 * 174.48769 * 5 3 2 7 7 O 1.42902 * 109.49506 * 181.86166 * 6 5 3 8 8 C 1.53036 * 109.50058 * 61.76231 * 6 5 3 9 9 C 1.53041 * 109.53732 * 178.68346 * 8 6 5 10 10 C 1.53193 * 109.31519 * 61.36469 * 9 8 6 11 11 N 1.46930 * 108.77443 * 305.36225 * 10 9 8 12 12 C 1.34767 * 120.62969 * 233.58689 * 11 10 9 13 13 O 1.21290 * 119.99932 * 180.02562 * 12 11 10 14 14 C 1.50697 * 120.00413 * 0.02562 * 12 11 10 15 15 C 1.52999 * 109.47289 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47289 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00154 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00183 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99817 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47218 * 89.99581 * 20 18 16 22 22 H 1.48502 * 109.47067 * 210.00080 * 20 18 16 23 23 H 1.48505 * 109.46959 * 330.00196 * 20 18 16 24 24 C 1.46926 * 118.73506 * 53.61166 * 11 10 9 25 25 C 1.53780 * 113.60980 * 43.29149 * 5 3 2 26 26 C 1.54049 * 86.98574 * 270.83479 * 25 5 3 27 27 C 1.53779 * 113.61419 * 305.68472 * 5 3 2 28 28 H 1.08997 * 109.46825 * 300.00152 * 1 2 3 29 29 H 1.09001 * 109.47113 * 59.99889 * 1 2 3 30 30 H 1.08998 * 109.47015 * 179.97438 * 1 2 3 31 31 H 0.96701 * 114.00134 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.46062 * 298.70018 * 8 6 5 33 33 H 1.08994 * 109.46081 * 58.66370 * 8 6 5 34 34 H 1.09002 * 109.49534 * 301.41189 * 9 8 6 35 35 H 1.09005 * 109.52509 * 181.33021 * 9 8 6 36 36 H 1.09005 * 109.58681 * 185.58085 * 10 9 8 37 37 H 1.08997 * 109.70194 * 65.22029 * 10 9 8 38 38 H 1.09004 * 109.46527 * 299.99758 * 14 12 11 39 39 H 1.08999 * 109.47228 * 59.99606 * 14 12 11 40 40 H 1.09004 * 109.47306 * 299.99873 * 15 14 12 41 41 H 1.08999 * 109.47346 * 59.99630 * 15 14 12 42 42 H 0.97008 * 119.99812 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58606 * 186.60615 * 24 11 10 44 44 H 1.08993 * 109.70459 * 66.24610 * 24 11 10 45 45 H 1.08992 * 113.61910 * 25.42947 * 25 5 3 46 46 H 1.09000 * 113.61094 * 156.33414 * 25 5 3 47 47 H 1.09003 * 113.62362 * 220.02582 * 26 25 5 48 48 H 1.09006 * 113.68804 * 89.12696 * 26 25 5 49 49 H 1.09002 * 113.60959 * 203.66306 * 27 5 3 50 50 H 1.09001 * 113.61436 * 334.56750 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0063 6 6 4.0867 2.7071 -0.1300 7 8 5.5154 2.6947 -0.1594 8 6 3.6068 3.5405 1.0604 9 6 4.1540 4.9648 0.9419 10 6 3.6221 5.6067 -0.3434 11 7 3.9545 4.7361 -1.4794 12 6 4.6137 5.2242 -2.5487 13 8 4.8819 4.4954 -3.4803 14 6 5.0177 6.6755 -2.5869 15 6 5.7454 6.9680 -3.9006 16 6 6.1488 8.4194 -3.9391 17 1 5.9097 9.0686 -3.1097 18 6 6.8231 8.9189 -5.0331 19 7 7.1747 10.1856 -5.0669 20 14 7.2373 7.7960 -6.4674 21 1 6.1265 7.8211 -7.4525 22 1 8.4870 8.2650 -7.1183 23 1 7.4278 6.4093 -5.9714 24 6 3.5541 3.3234 -1.4275 25 6 4.2393 0.2808 -0.9548 26 6 4.2340 -0.7253 0.2117 27 6 4.2196 0.4888 1.1553 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 5.9147 3.5714 -0.2442 32 1 2.5173 3.5696 1.0677 33 1 3.9641 3.0902 1.9865 34 1 5.2432 4.9346 0.9097 35 1 3.8316 5.5518 1.8020 36 1 4.0860 6.5831 -0.4834 37 1 2.5404 5.7223 -0.2760 38 1 4.1284 7.3020 -2.5172 39 1 5.6802 6.8905 -1.7484 40 1 6.6346 6.3414 -3.9708 41 1 5.0825 6.7531 -4.7388 42 1 7.6488 10.5370 -5.8368 43 1 3.9731 2.7932 -2.2828 44 1 2.4669 3.2486 -1.4481 45 1 3.6059 -0.0149 -1.7911 46 1 5.2392 0.5831 -1.2661 47 1 5.1449 -1.3202 0.2796 48 1 3.3286 -1.3300 0.2645 49 1 5.2141 0.8481 1.4199 50 1 3.5702 0.3610 2.0214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888207574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:24 Heat of formation + Delta-G solvation = -147.017644 kcal Electronic energy + Delta-G solvation = -31819.431436 eV Core-core repulsion = 27619.686831 eV Total energy + Delta-G solvation = -4199.744606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89122 -40.09947 -38.87519 -37.46289 -36.76740 -35.15417 -33.52856 -32.33291 -31.51323 -30.64046 -28.48285 -27.02259 -26.37221 -25.85740 -24.61457 -23.19909 -22.18477 -21.32613 -20.24682 -19.88290 -18.50002 -17.72375 -17.51697 -16.94261 -16.77211 -16.37345 -16.25837 -15.69322 -15.26990 -15.20541 -14.77663 -14.72237 -14.12271 -13.90418 -13.86136 -13.70588 -13.52877 -13.16353 -12.99653 -12.64598 -12.57061 -12.55092 -12.36960 -12.19071 -11.94978 -11.61527 -11.47603 -11.35459 -11.22645 -11.18749 -10.96082 -10.93947 -10.82095 -10.50734 -10.33142 -10.12269 -10.03946 -9.97274 -9.77385 -9.22358 -9.13148 -8.51057 -8.43452 -6.02527 -4.01194 1.74580 2.17680 3.06799 3.14057 3.38786 3.45298 3.56484 3.87557 4.02085 4.16682 4.24400 4.48489 4.51724 4.59881 4.67560 4.71175 4.75919 4.80640 4.83295 4.98403 5.13889 5.14903 5.19307 5.33119 5.33740 5.41546 5.50465 5.52591 5.60602 5.64911 5.68310 5.70290 5.73195 5.75662 5.83129 5.91975 5.98005 6.04657 6.08141 6.13185 6.25776 6.59387 6.70968 7.33131 7.37093 7.43853 7.47137 7.63139 7.79897 8.49378 8.61681 9.00306 9.60703 11.10252 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.002793 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.994724 B =10023.079137 C =10243.931912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.350 6.350 3 C 0.489 3.511 4 O -0.494 6.494 5 C -0.077 4.077 6 C 0.155 3.845 7 O -0.549 6.549 8 C -0.153 4.153 9 C -0.136 4.136 10 C 0.104 3.896 11 N -0.623 5.623 12 C 0.511 3.489 13 O -0.536 6.536 14 C -0.120 4.120 15 C 0.002 3.998 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.080 3.920 25 C -0.113 4.113 26 C -0.141 4.141 27 C -0.107 4.107 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.384 0.616 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.263 0.737 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.106 0.894 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -22.531 17.588 30.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.332 3.668 4 O -0.381 6.381 5 C -0.079 4.079 6 C 0.113 3.887 7 O -0.357 6.357 8 C -0.191 4.191 9 C -0.175 4.175 10 C -0.019 4.019 11 N -0.358 5.358 12 C 0.302 3.698 13 O -0.412 6.412 14 C -0.160 4.160 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.044 4.044 25 C -0.150 4.150 26 C -0.179 4.179 27 C -0.144 4.144 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.126 0.874 47 H 0.093 0.907 48 H 0.109 0.891 49 H 0.124 0.876 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.831 -23.116 17.002 31.039 hybrid contribution -0.090 0.365 -0.754 0.843 sum -11.921 -22.751 16.248 30.392 Atomic orbital electron populations 1.23326 0.76078 1.03860 1.02771 1.86506 1.23409 1.32776 1.83894 1.22738 0.90463 0.81465 0.72118 1.90628 1.66880 1.35912 1.44681 1.21450 0.87385 0.95731 1.03332 1.20783 0.81849 0.91219 0.94872 1.86340 1.17558 1.35299 1.96482 1.22351 1.03434 0.95370 0.97904 1.21932 1.01153 0.96184 0.98188 1.21794 1.00826 0.94392 0.84935 1.48247 1.58740 1.09481 1.19371 1.21604 0.75830 0.91645 0.80740 1.90650 1.54290 1.60587 1.35658 1.21691 1.01851 0.89321 1.03123 1.19377 0.95657 0.97259 0.91334 1.21101 1.36874 0.93169 1.05072 0.90954 1.24966 0.95084 0.94873 0.98289 1.69911 1.40311 1.13347 1.30680 0.86802 0.77907 0.82119 0.82769 1.20270 1.21447 1.18506 1.22327 1.01004 0.82728 0.98301 1.22945 1.02088 0.93763 0.96212 1.22988 1.02976 0.96441 0.95457 1.22840 1.01698 0.94996 0.94909 0.91774 0.91673 0.87928 0.76564 0.88892 0.91284 0.91344 0.90083 0.88593 0.91292 0.89667 0.89593 0.95804 0.96342 0.92725 0.88669 0.89927 0.90933 0.87406 0.90726 0.89074 0.87585 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.03 8.66 -39.27 -0.34 -3.37 16 3 C 0.49 5.08 6.55 36.01 0.24 5.32 16 4 O -0.49 -6.03 11.83 -18.75 -0.22 -6.25 16 5 C -0.08 -0.76 0.46 -154.85 -0.07 -0.83 16 6 C 0.15 1.72 0.35 -90.50 -0.03 1.69 16 7 O -0.55 -6.42 10.99 -35.23 -0.39 -6.81 16 8 C -0.15 -1.52 4.57 -26.69 -0.12 -1.64 16 9 C -0.14 -1.27 5.78 -26.61 -0.15 -1.42 16 10 C 0.10 1.18 6.34 -3.71 -0.02 1.15 16 11 N -0.62 -9.06 2.55 -172.76 -0.44 -9.50 16 12 C 0.51 9.57 7.70 -10.99 -0.08 9.49 16 13 O -0.54 -12.12 15.40 5.55 0.09 -12.03 16 14 C -0.12 -2.34 3.99 -27.88 -0.11 -2.45 16 15 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 16 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 17 H 0.07 2.15 7.99 -52.48 -0.42 1.74 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 20 Si 0.88 22.76 27.47 -169.99 -4.67 18.09 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 24 C 0.08 1.10 5.04 -3.71 -0.02 1.09 16 25 C -0.11 -1.07 6.78 -25.78 -0.17 -1.25 16 26 C -0.14 -1.07 7.64 -25.78 -0.20 -1.27 16 27 C -0.11 -0.87 6.54 -25.92 -0.17 -1.04 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 4.39 6.86 45.56 0.31 4.71 16 32 H 0.09 1.02 5.80 -51.93 -0.30 0.72 16 33 H 0.07 0.62 7.72 -51.93 -0.40 0.22 16 34 H 0.07 0.62 6.70 -51.93 -0.35 0.28 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.06 5.93 -51.93 -0.31 0.76 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.56 7.94 -51.93 -0.41 1.15 16 39 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 40 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 41 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.10 1.53 6.91 -51.93 -0.36 1.17 16 44 H 0.08 1.19 5.76 -51.93 -0.30 0.89 16 45 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 46 H 0.11 1.15 7.29 -51.93 -0.38 0.77 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.09 0.66 6.86 -51.93 -0.36 0.30 16 49 H 0.11 0.90 7.42 -51.93 -0.39 0.51 16 50 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -34.73 381.26 -7.19 -41.92 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.36 Total: 2.85 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.38 Total: -3.34 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.33 Total: -36.80 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.86 Total: -28.47 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.67 Total: 18.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.73 -7.19 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888207574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.099 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds