Wall clock time and date at job start Tue Mar 31 2020 23:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00154 * 2 1 4 4 O 1.20830 * 119.99633 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00120 * 179.72243 * 3 2 1 6 6 C 1.52995 * 112.84644 * 174.48769 * 5 3 2 7 7 O 1.42902 * 109.49506 * 181.86166 * 6 5 3 8 8 C 1.53036 * 109.50058 * 61.76231 * 6 5 3 9 9 C 1.53041 * 109.53732 * 178.68346 * 8 6 5 10 10 C 1.53193 * 109.31519 * 61.36469 * 9 8 6 11 11 N 1.46930 * 108.77443 * 305.36225 * 10 9 8 12 12 C 1.34767 * 120.62969 * 233.58689 * 11 10 9 13 13 O 1.21290 * 119.99932 * 180.02562 * 12 11 10 14 14 C 1.50697 * 120.00413 * 0.02562 * 12 11 10 15 15 C 1.52999 * 109.47289 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47289 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00154 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00183 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99817 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47218 * 89.99581 * 20 18 16 22 22 H 1.48502 * 109.47067 * 210.00080 * 20 18 16 23 23 H 1.48505 * 109.46959 * 330.00196 * 20 18 16 24 24 C 1.46926 * 118.73506 * 53.61166 * 11 10 9 25 25 C 1.53780 * 113.60980 * 43.29149 * 5 3 2 26 26 C 1.54049 * 86.98574 * 270.83479 * 25 5 3 27 27 C 1.53779 * 113.61419 * 305.68472 * 5 3 2 28 28 H 1.08997 * 109.46825 * 300.00152 * 1 2 3 29 29 H 1.09001 * 109.47113 * 59.99889 * 1 2 3 30 30 H 1.08998 * 109.47015 * 179.97438 * 1 2 3 31 31 H 0.96701 * 114.00134 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.46062 * 298.70018 * 8 6 5 33 33 H 1.08994 * 109.46081 * 58.66370 * 8 6 5 34 34 H 1.09002 * 109.49534 * 301.41189 * 9 8 6 35 35 H 1.09005 * 109.52509 * 181.33021 * 9 8 6 36 36 H 1.09005 * 109.58681 * 185.58085 * 10 9 8 37 37 H 1.08997 * 109.70194 * 65.22029 * 10 9 8 38 38 H 1.09004 * 109.46527 * 299.99758 * 14 12 11 39 39 H 1.08999 * 109.47228 * 59.99606 * 14 12 11 40 40 H 1.09004 * 109.47306 * 299.99873 * 15 14 12 41 41 H 1.08999 * 109.47346 * 59.99630 * 15 14 12 42 42 H 0.97008 * 119.99812 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58606 * 186.60615 * 24 11 10 44 44 H 1.08993 * 109.70459 * 66.24610 * 24 11 10 45 45 H 1.08992 * 113.61910 * 25.42947 * 25 5 3 46 46 H 1.09000 * 113.61094 * 156.33414 * 25 5 3 47 47 H 1.09003 * 113.62362 * 220.02582 * 26 25 5 48 48 H 1.09006 * 113.68804 * 89.12696 * 26 25 5 49 49 H 1.09002 * 113.60959 * 203.66306 * 27 5 3 50 50 H 1.09001 * 113.61436 * 334.56750 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0063 6 6 4.0867 2.7071 -0.1300 7 8 5.5154 2.6947 -0.1594 8 6 3.6068 3.5405 1.0604 9 6 4.1540 4.9648 0.9419 10 6 3.6221 5.6067 -0.3434 11 7 3.9545 4.7361 -1.4794 12 6 4.6137 5.2242 -2.5487 13 8 4.8819 4.4954 -3.4803 14 6 5.0177 6.6755 -2.5869 15 6 5.7454 6.9680 -3.9006 16 6 6.1488 8.4194 -3.9391 17 1 5.9097 9.0686 -3.1097 18 6 6.8231 8.9189 -5.0331 19 7 7.1747 10.1856 -5.0669 20 14 7.2373 7.7960 -6.4674 21 1 6.1265 7.8211 -7.4525 22 1 8.4870 8.2650 -7.1183 23 1 7.4278 6.4093 -5.9714 24 6 3.5541 3.3234 -1.4275 25 6 4.2393 0.2808 -0.9548 26 6 4.2340 -0.7253 0.2117 27 6 4.2196 0.4888 1.1553 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 5.9147 3.5714 -0.2442 32 1 2.5173 3.5696 1.0677 33 1 3.9641 3.0902 1.9865 34 1 5.2432 4.9346 0.9097 35 1 3.8316 5.5518 1.8020 36 1 4.0860 6.5831 -0.4834 37 1 2.5404 5.7223 -0.2760 38 1 4.1284 7.3020 -2.5172 39 1 5.6802 6.8905 -1.7484 40 1 6.6346 6.3414 -3.9708 41 1 5.0825 6.7531 -4.7388 42 1 7.6488 10.5370 -5.8368 43 1 3.9731 2.7932 -2.2828 44 1 2.4669 3.2486 -1.4481 45 1 3.6059 -0.0149 -1.7911 46 1 5.2392 0.5831 -1.2661 47 1 5.1449 -1.3202 0.2796 48 1 3.3286 -1.3300 0.2645 49 1 5.2141 0.8481 1.4199 50 1 3.5702 0.3610 2.0214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888207574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:23 Heat of formation + Delta-G solvation = -169.923183 kcal Electronic energy + Delta-G solvation = -31820.424695 eV Core-core repulsion = 27619.686831 eV Total energy + Delta-G solvation = -4200.737864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.71355 -41.20945 -39.89532 -38.42656 -37.55658 -36.21350 -35.59343 -33.50928 -33.23732 -31.75881 -29.11677 -28.50998 -27.16013 -26.89307 -25.83750 -24.07016 -23.12859 -22.87555 -21.36880 -20.67020 -19.81268 -19.13951 -18.46985 -18.26001 -17.76298 -17.49997 -17.10767 -16.77837 -16.52998 -16.24853 -16.19646 -15.83083 -15.41177 -14.98689 -14.88872 -14.69415 -14.62439 -14.39270 -14.32607 -13.98406 -13.83365 -13.43916 -13.35740 -13.08901 -12.97906 -12.93579 -12.78589 -12.48390 -12.32186 -12.11145 -12.00189 -11.92144 -11.90941 -11.78211 -11.70190 -11.53320 -11.40286 -11.32955 -11.18113 -10.84138 -10.78736 -10.68821 -9.63727 -8.32130 -6.34632 0.96643 1.31923 1.34038 1.49092 1.49131 1.59618 1.91049 2.34139 3.03635 3.06395 3.23196 3.39381 3.51101 3.63182 3.75268 3.83768 3.86512 3.97060 4.08178 4.16799 4.27099 4.31774 4.32551 4.40999 4.43881 4.45408 4.51259 4.67321 4.71395 4.72757 4.80402 4.82849 4.85174 4.92150 4.95777 5.00743 5.07329 5.10820 5.11574 5.19792 5.30983 5.39833 5.41980 5.49865 5.54596 5.59580 6.22204 6.32191 6.51819 6.64034 6.71324 7.16098 7.30739 8.83396 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.002793 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.994724 B =10023.079137 C =10243.931912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.490 3.510 4 O -0.517 6.517 5 C -0.084 4.084 6 C 0.159 3.841 7 O -0.552 6.552 8 C -0.147 4.147 9 C -0.131 4.131 10 C 0.095 3.905 11 N -0.610 5.610 12 C 0.513 3.487 13 O -0.584 6.584 14 C -0.112 4.112 15 C 0.006 3.994 16 C -0.527 4.527 17 H 0.053 0.947 18 C 0.015 3.985 19 N -0.942 5.942 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.262 1.262 24 C 0.082 3.918 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.099 4.099 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.385 0.615 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.011 0.989 41 H 0.004 0.996 42 H 0.267 0.733 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.105 0.895 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 -24.162 19.483 33.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.334 3.666 4 O -0.406 6.406 5 C -0.086 4.086 6 C 0.117 3.883 7 O -0.360 6.360 8 C -0.185 4.185 9 C -0.169 4.169 10 C -0.027 4.027 11 N -0.343 5.343 12 C 0.304 3.696 13 O -0.463 6.463 14 C -0.151 4.151 15 C -0.032 4.032 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.182 4.182 19 N -0.583 5.583 20 Si 0.760 3.240 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.041 4.041 25 C -0.156 4.156 26 C -0.166 4.166 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.235 0.765 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.029 0.971 41 H 0.022 0.978 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.104 0.896 48 H 0.117 0.883 49 H 0.123 0.877 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.478 -24.761 18.950 33.584 hybrid contribution 0.005 0.876 -1.290 1.559 sum -12.473 -23.885 17.661 32.217 Atomic orbital electron populations 1.23599 0.74568 1.05861 1.02591 1.86496 1.24854 1.31744 1.83374 1.22804 0.90578 0.81643 0.71552 1.90615 1.67356 1.36681 1.45927 1.21521 0.87458 0.94998 1.04584 1.20766 0.81476 0.92269 0.93747 1.86354 1.17849 1.35425 1.96409 1.22301 1.02915 0.95560 0.97701 1.21932 1.01383 0.95900 0.97647 1.22106 1.01656 0.94258 0.84644 1.48189 1.56867 1.10280 1.18983 1.21348 0.76154 0.90960 0.81165 1.90632 1.56639 1.61403 1.37672 1.21509 1.02318 0.90410 1.00874 1.19220 0.95377 0.94643 0.93940 1.21398 1.36145 0.94633 1.04275 0.92901 1.25761 0.95318 0.96138 1.01021 1.70014 1.41513 1.14929 1.31804 0.85872 0.78211 0.80044 0.79843 1.19602 1.20225 1.18688 1.22351 1.00601 0.82034 0.99124 1.22930 1.01112 0.94786 0.96817 1.22948 1.03873 0.96081 0.93731 1.22826 1.01576 0.94426 0.94757 0.91456 0.92390 0.84883 0.76532 0.89646 0.89706 0.90838 0.87540 0.88001 0.90412 0.88275 0.87445 0.97106 0.97755 0.92366 0.91361 0.90346 0.91440 0.88887 0.89636 0.88338 0.87700 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.48 8.66 -51.45 -0.45 -5.92 16 3 C 0.49 9.62 6.55 71.24 0.47 10.09 16 4 O -0.52 -12.17 11.83 21.95 0.26 -11.91 16 5 C -0.08 -1.56 0.46 -52.40 -0.02 -1.58 16 6 C 0.16 3.38 0.35 -10.72 0.00 3.37 16 7 O -0.55 -12.40 10.99 -148.98 -1.64 -14.04 16 8 C -0.15 -2.58 4.57 30.62 0.14 -2.44 16 9 C -0.13 -2.06 5.78 30.67 0.18 -1.88 16 10 C 0.09 1.97 6.34 86.36 0.55 2.51 16 11 N -0.61 -17.35 2.55 -818.88 -2.09 -19.44 16 12 C 0.51 19.19 7.70 87.66 0.67 19.87 16 13 O -0.58 -26.97 15.40 -3.06 -0.05 -27.01 16 14 C -0.11 -4.28 3.99 29.85 0.12 -4.16 16 15 C 0.01 0.31 3.33 29.85 0.10 0.41 16 16 C -0.53 -30.42 9.66 25.60 0.25 -30.18 16 17 H 0.05 3.19 7.99 -2.91 -0.02 3.16 16 18 C 0.02 0.92 5.47 84.66 0.46 1.39 16 19 N -0.94 -59.07 13.96 21.45 0.30 -58.77 16 20 Si 0.94 47.29 27.47 68.60 1.88 49.18 16 21 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.26 -13.25 6.54 99.48 0.65 -12.60 16 24 C 0.08 2.28 5.04 86.37 0.44 2.71 16 25 C -0.12 -2.20 6.78 31.21 0.21 -1.99 16 26 C -0.13 -1.71 7.64 31.21 0.24 -1.47 16 27 C -0.10 -1.38 6.54 31.12 0.20 -1.18 16 28 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 29 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.38 8.39 6.86 -74.06 -0.51 7.88 16 32 H 0.09 1.70 5.80 -2.39 -0.01 1.69 16 33 H 0.08 1.26 7.72 -2.39 -0.02 1.25 16 34 H 0.07 1.13 6.70 -2.39 -0.02 1.11 16 35 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.10 2.02 5.93 -2.38 -0.01 2.00 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 3.52 7.94 -2.39 -0.02 3.50 16 39 H 0.11 3.64 7.69 -2.39 -0.02 3.62 16 40 H 0.01 0.56 7.15 -2.39 -0.02 0.54 16 41 H 0.00 0.22 7.53 -2.39 -0.02 0.20 16 42 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 43 H 0.07 2.28 6.91 -2.38 -0.02 2.26 16 44 H 0.08 2.27 5.76 -2.39 -0.01 2.26 16 45 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 46 H 0.09 2.01 7.29 -2.39 -0.02 1.99 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.10 1.18 6.86 -2.38 -0.02 1.17 16 49 H 0.10 1.53 7.42 -2.39 -0.02 1.51 16 50 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 Total: -1.00 -75.89 381.26 3.81 -72.08 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.39 Total: 18.89 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.19 Total: -3.06 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.79 Total: -78.21 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -1.87 Total: -58.89 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.88 Total: 49.18 kcal Total: -75.89 3.81 -72.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888207574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.843 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds