Wall clock time and date at job start Tue Mar 31 2020 23:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00057 * 2 1 4 4 O 1.20830 * 120.00640 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.52999 * 112.84853 * 185.78506 * 5 3 2 7 7 O 1.42906 * 109.49551 * 178.14070 * 6 5 3 8 8 C 1.53035 * 109.49962 * 298.20688 * 6 5 3 9 9 C 1.53041 * 109.53834 * 181.35352 * 8 6 5 10 10 C 1.53198 * 109.33783 * 298.61724 * 9 8 6 11 11 N 1.46989 * 108.73625 * 54.62493 * 10 9 8 12 12 C 1.34774 * 120.61712 * 126.39081 * 11 10 9 13 13 O 1.21280 * 120.00473 * 180.02562 * 12 11 10 14 14 C 1.50704 * 119.99644 * 0.02562 * 12 11 10 15 15 C 1.52999 * 109.46821 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46929 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00174 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99857 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47380 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47060 * 120.00189 * 20 18 16 23 23 H 1.48502 * 109.47365 * 239.99681 * 20 18 16 24 24 C 1.46929 * 118.75395 * 306.40822 * 11 10 9 25 25 C 1.53780 * 113.61075 * 316.98204 * 5 3 2 26 26 C 1.53955 * 87.02108 * 89.22772 * 25 5 3 27 27 C 1.53773 * 113.61335 * 54.58769 * 5 3 2 28 28 H 1.09002 * 109.47056 * 300.00246 * 1 2 3 29 29 H 1.08996 * 109.46791 * 60.00480 * 1 2 3 30 30 H 1.08994 * 109.47222 * 180.02562 * 1 2 3 31 31 H 0.96701 * 114.00042 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.46241 * 61.33098 * 8 6 5 33 33 H 1.09003 * 109.46183 * 301.37030 * 8 6 5 34 34 H 1.08998 * 109.49924 * 58.59049 * 9 8 6 35 35 H 1.09003 * 109.49835 * 178.65461 * 9 8 6 36 36 H 1.09000 * 109.58532 * 174.43954 * 10 9 8 37 37 H 1.09000 * 109.58330 * 294.86643 * 10 9 8 38 38 H 1.08996 * 109.47039 * 300.00449 * 14 12 11 39 39 H 1.08993 * 109.46623 * 60.00708 * 14 12 11 40 40 H 1.08996 * 109.47441 * 299.99909 * 15 14 12 41 41 H 1.08996 * 109.47447 * 60.00301 * 15 14 12 42 42 H 0.96991 * 120.00533 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58856 * 293.82046 * 24 11 10 44 44 H 1.08998 * 109.58546 * 173.40076 * 24 11 10 45 45 H 1.09002 * 113.61012 * 203.74878 * 25 5 3 46 46 H 1.08996 * 113.61370 * 334.65056 * 25 5 3 47 47 H 1.09000 * 113.53770 * 270.81189 * 26 25 5 48 48 H 1.08997 * 113.74390 * 139.94177 * 26 25 5 49 49 H 1.09003 * 113.61585 * 25.35306 * 27 5 3 50 50 H 1.09002 * 113.61699 * 156.24988 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0862 2.7068 0.1426 7 8 5.5147 2.6943 0.1783 8 6 3.6122 3.5427 -1.0484 9 6 4.1596 4.9665 -0.9245 10 6 3.6221 5.6068 0.3592 11 7 3.9487 4.7331 1.4952 12 6 4.6039 5.2185 2.5683 13 8 4.8682 4.4876 3.4993 14 6 5.0082 6.6697 2.6113 15 6 5.7320 6.9586 3.9279 16 6 6.1357 8.4098 3.9712 17 1 5.9001 9.0609 3.1423 18 6 6.8069 8.9063 5.0686 19 7 7.0943 8.1135 6.0777 20 14 7.3079 10.7050 5.1219 21 1 6.8701 11.3781 3.8727 22 1 6.6672 11.3630 6.2889 23 1 8.7844 10.8042 5.2468 24 6 3.5478 3.3207 1.4387 25 6 4.2350 0.2784 0.9624 26 6 4.2369 -0.7244 -0.2058 27 6 4.2247 0.4915 -1.1473 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 5.9136 3.5706 0.2677 32 1 2.5227 3.5724 -1.0607 33 1 3.9735 3.0940 -1.9738 34 1 5.2485 4.9357 -0.8874 35 1 3.8415 5.5548 -1.7853 36 1 4.0858 6.5827 0.5027 37 1 2.5406 5.7211 0.2853 38 1 5.6740 6.8862 1.7759 39 1 4.1195 7.2966 2.5396 40 1 5.0665 6.7420 4.7635 41 1 6.6207 6.3316 3.9992 42 1 7.5661 8.4627 6.8498 43 1 2.4603 3.2487 1.4530 44 1 3.9625 2.7887 2.2949 45 1 5.2329 0.5808 1.2799 46 1 3.5973 -0.0203 1.7943 47 1 3.3318 -1.3291 -0.2618 48 1 5.1480 -1.3190 -0.2723 49 1 3.5787 0.3645 -2.0161 50 1 5.2198 0.8522 -1.4077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888207575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:27 Heat of formation + Delta-G solvation = -149.740169 kcal Electronic energy + Delta-G solvation = -31741.478802 eV Core-core repulsion = 27541.616139 eV Total energy + Delta-G solvation = -4199.862663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.84058 -40.01846 -38.79077 -37.38734 -36.71811 -35.07247 -33.49122 -32.25556 -31.34736 -30.42769 -28.43838 -26.77008 -26.31207 -25.69713 -24.53827 -23.15987 -22.13485 -21.58352 -20.26177 -19.84188 -18.38114 -17.67981 -17.36653 -16.80476 -16.72387 -16.32526 -15.95847 -15.57024 -15.18745 -15.13130 -14.72180 -14.63129 -14.40002 -13.89137 -13.79647 -13.65335 -13.42797 -13.08627 -12.92935 -12.58786 -12.51981 -12.25532 -12.15441 -12.08176 -11.88842 -11.52652 -11.40648 -11.27515 -11.14256 -11.04016 -10.94229 -10.89205 -10.77253 -10.55955 -10.45686 -10.27553 -9.95917 -9.93953 -9.59639 -9.15532 -8.96931 -8.37123 -8.29307 -5.95303 -3.99689 1.78942 2.21972 3.20408 3.23760 3.32963 3.40248 3.43400 3.92861 4.07237 4.21598 4.29404 4.47467 4.53452 4.64931 4.72926 4.74565 4.81341 4.84242 4.89100 5.03412 5.17294 5.20200 5.29567 5.38510 5.39695 5.46394 5.56773 5.58237 5.65338 5.69290 5.72646 5.75588 5.78312 5.81642 5.88484 5.96272 6.05887 6.17340 6.20134 6.22575 6.30439 6.70797 6.90742 7.37805 7.53157 7.75193 7.76292 7.87197 8.08110 8.39204 8.74858 9.08999 9.63868 11.15687 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002588 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.126571 B =10815.242069 C =10909.762273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.350 6.350 3 C 0.490 3.510 4 O -0.494 6.494 5 C -0.077 4.077 6 C 0.155 3.845 7 O -0.549 6.549 8 C -0.153 4.153 9 C -0.136 4.136 10 C 0.105 3.895 11 N -0.625 5.625 12 C 0.511 3.489 13 O -0.530 6.530 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.080 3.920 25 C -0.113 4.113 26 C -0.141 4.141 27 C -0.107 4.107 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.384 0.616 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 -17.747 -19.524 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.332 3.668 4 O -0.381 6.381 5 C -0.079 4.079 6 C 0.113 3.887 7 O -0.357 6.357 8 C -0.190 4.190 9 C -0.175 4.175 10 C -0.018 4.018 11 N -0.361 5.361 12 C 0.301 3.699 13 O -0.405 6.405 14 C -0.167 4.167 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.043 4.043 25 C -0.150 4.150 26 C -0.179 4.179 27 C -0.145 4.145 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.091 0.909 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.485 -18.472 -18.867 28.794 hybrid contribution -0.022 1.764 0.075 1.765 sum -11.507 -16.708 -18.793 27.654 Atomic orbital electron populations 1.23322 0.76114 1.03841 1.02757 1.86503 1.23384 1.32801 1.83902 1.22743 0.90476 0.81448 0.72101 1.90627 1.66899 1.35903 1.44691 1.21450 0.87352 0.95786 1.03300 1.20782 0.81878 0.91171 0.94902 1.86338 1.17565 1.35357 1.96418 1.22347 1.03407 0.95369 0.97902 1.21935 1.01121 0.96210 0.98202 1.21770 1.00675 0.94363 0.85006 1.48306 1.59236 1.09351 1.19225 1.21636 0.75815 0.91733 0.80674 1.90664 1.53855 1.60335 1.35616 1.21883 1.01553 0.89242 1.04057 1.18908 0.95584 0.96116 0.89461 1.21248 1.36987 0.94976 1.03194 0.92589 1.25027 0.95994 0.97679 0.95701 1.70005 1.40597 1.35077 1.07113 0.86546 0.78241 0.85285 0.77945 1.19760 1.21036 1.21013 1.22310 1.00857 0.82901 0.98243 1.22930 1.02157 0.93710 0.96195 1.22970 1.02951 0.96444 0.95499 1.22839 1.01659 0.95043 0.94910 0.91665 0.91806 0.87943 0.76550 0.88940 0.91351 0.91379 0.90226 0.88715 0.91453 0.90260 0.90301 0.95885 0.95799 0.93008 0.90047 0.88644 0.87364 0.90910 0.89121 0.90721 0.91315 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.17 8.67 -39.23 -0.34 -3.51 16 3 C 0.49 5.29 6.56 36.01 0.24 5.53 16 4 O -0.49 -6.24 11.83 -18.75 -0.22 -6.47 16 5 C -0.08 -0.80 0.46 -154.85 -0.07 -0.87 16 6 C 0.15 1.80 0.35 -90.51 -0.03 1.77 16 7 O -0.55 -6.73 10.99 -35.23 -0.39 -7.12 16 8 C -0.15 -1.58 4.57 -26.69 -0.12 -1.70 16 9 C -0.14 -1.32 5.78 -26.61 -0.15 -1.47 16 10 C 0.11 1.24 6.34 -3.67 -0.02 1.22 16 11 N -0.62 -9.55 2.55 -172.71 -0.44 -9.99 16 12 C 0.51 10.13 7.70 -10.98 -0.08 10.04 16 13 O -0.53 -12.76 15.39 5.56 0.09 -12.68 16 14 C -0.13 -2.61 3.99 -27.88 -0.11 -2.72 16 15 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 16 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.08 1.17 5.04 -3.71 -0.02 1.15 16 25 C -0.11 -1.13 6.77 -25.83 -0.17 -1.30 16 26 C -0.14 -1.13 7.64 -25.83 -0.20 -1.33 16 27 C -0.11 -0.91 6.54 -25.92 -0.17 -1.08 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.38 4.64 6.86 45.56 0.31 4.95 16 32 H 0.09 1.06 5.81 -51.93 -0.30 0.75 16 33 H 0.07 0.64 7.72 -51.93 -0.40 0.24 16 34 H 0.07 0.65 6.69 -51.93 -0.35 0.30 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.09 5.94 -51.93 -0.31 0.78 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 39 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 43 H 0.08 1.23 5.76 -51.93 -0.30 0.93 16 44 H 0.10 1.61 6.91 -51.93 -0.36 1.26 16 45 H 0.11 1.22 7.29 -51.93 -0.38 0.84 16 46 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 47 H 0.09 0.69 6.86 -51.93 -0.36 0.33 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 50 H 0.11 0.94 7.42 -51.93 -0.39 0.55 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -34.78 384.87 -7.57 -42.35 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.39 Total: 4.00 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.39 Total: -2.27 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.30 Total: -36.82 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.86 Total: -29.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.78 -7.57 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888207575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.391 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds