Wall clock time and date at job start Tue Mar 31 2020 23:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00057 * 2 1 4 4 O 1.20830 * 120.00640 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.52999 * 112.84853 * 185.78506 * 5 3 2 7 7 O 1.42906 * 109.49551 * 178.14070 * 6 5 3 8 8 C 1.53035 * 109.49962 * 298.20688 * 6 5 3 9 9 C 1.53041 * 109.53834 * 181.35352 * 8 6 5 10 10 C 1.53198 * 109.33783 * 298.61724 * 9 8 6 11 11 N 1.46989 * 108.73625 * 54.62493 * 10 9 8 12 12 C 1.34774 * 120.61712 * 126.39081 * 11 10 9 13 13 O 1.21280 * 120.00473 * 180.02562 * 12 11 10 14 14 C 1.50704 * 119.99644 * 0.02562 * 12 11 10 15 15 C 1.52999 * 109.46821 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46929 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00174 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99857 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47380 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47060 * 120.00189 * 20 18 16 23 23 H 1.48502 * 109.47365 * 239.99681 * 20 18 16 24 24 C 1.46929 * 118.75395 * 306.40822 * 11 10 9 25 25 C 1.53780 * 113.61075 * 316.98204 * 5 3 2 26 26 C 1.53955 * 87.02108 * 89.22772 * 25 5 3 27 27 C 1.53773 * 113.61335 * 54.58769 * 5 3 2 28 28 H 1.09002 * 109.47056 * 300.00246 * 1 2 3 29 29 H 1.08996 * 109.46791 * 60.00480 * 1 2 3 30 30 H 1.08994 * 109.47222 * 180.02562 * 1 2 3 31 31 H 0.96701 * 114.00042 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.46241 * 61.33098 * 8 6 5 33 33 H 1.09003 * 109.46183 * 301.37030 * 8 6 5 34 34 H 1.08998 * 109.49924 * 58.59049 * 9 8 6 35 35 H 1.09003 * 109.49835 * 178.65461 * 9 8 6 36 36 H 1.09000 * 109.58532 * 174.43954 * 10 9 8 37 37 H 1.09000 * 109.58330 * 294.86643 * 10 9 8 38 38 H 1.08996 * 109.47039 * 300.00449 * 14 12 11 39 39 H 1.08993 * 109.46623 * 60.00708 * 14 12 11 40 40 H 1.08996 * 109.47441 * 299.99909 * 15 14 12 41 41 H 1.08996 * 109.47447 * 60.00301 * 15 14 12 42 42 H 0.96991 * 120.00533 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58856 * 293.82046 * 24 11 10 44 44 H 1.08998 * 109.58546 * 173.40076 * 24 11 10 45 45 H 1.09002 * 113.61012 * 203.74878 * 25 5 3 46 46 H 1.08996 * 113.61370 * 334.65056 * 25 5 3 47 47 H 1.09000 * 113.53770 * 270.81189 * 26 25 5 48 48 H 1.08997 * 113.74390 * 139.94177 * 26 25 5 49 49 H 1.09003 * 113.61585 * 25.35306 * 27 5 3 50 50 H 1.09002 * 113.61699 * 156.24988 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0862 2.7068 0.1426 7 8 5.5147 2.6943 0.1783 8 6 3.6122 3.5427 -1.0484 9 6 4.1596 4.9665 -0.9245 10 6 3.6221 5.6068 0.3592 11 7 3.9487 4.7331 1.4952 12 6 4.6039 5.2185 2.5683 13 8 4.8682 4.4876 3.4993 14 6 5.0082 6.6697 2.6113 15 6 5.7320 6.9586 3.9279 16 6 6.1357 8.4098 3.9712 17 1 5.9001 9.0609 3.1423 18 6 6.8069 8.9063 5.0686 19 7 7.0943 8.1135 6.0777 20 14 7.3079 10.7050 5.1219 21 1 6.8701 11.3781 3.8727 22 1 6.6672 11.3630 6.2889 23 1 8.7844 10.8042 5.2468 24 6 3.5478 3.3207 1.4387 25 6 4.2350 0.2784 0.9624 26 6 4.2369 -0.7244 -0.2058 27 6 4.2247 0.4915 -1.1473 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 5.9136 3.5706 0.2677 32 1 2.5227 3.5724 -1.0607 33 1 3.9735 3.0940 -1.9738 34 1 5.2485 4.9357 -0.8874 35 1 3.8415 5.5548 -1.7853 36 1 4.0858 6.5827 0.5027 37 1 2.5406 5.7211 0.2853 38 1 5.6740 6.8862 1.7759 39 1 4.1195 7.2966 2.5396 40 1 5.0665 6.7420 4.7635 41 1 6.6207 6.3316 3.9992 42 1 7.5661 8.4627 6.8498 43 1 2.4603 3.2487 1.4530 44 1 3.9625 2.7887 2.2949 45 1 5.2329 0.5808 1.2799 46 1 3.5973 -0.0203 1.7943 47 1 3.3318 -1.3291 -0.2618 48 1 5.1480 -1.3190 -0.2723 49 1 3.5787 0.3645 -2.0161 50 1 5.2198 0.8522 -1.4077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888207575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:26 Heat of formation + Delta-G solvation = -172.872878 kcal Electronic energy + Delta-G solvation = -31742.481912 eV Core-core repulsion = 27541.616139 eV Total energy + Delta-G solvation = -4200.865773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71041 -41.18884 -39.88453 -38.41964 -37.55553 -36.20299 -35.60476 -33.41296 -33.04911 -31.67866 -29.08904 -28.25964 -27.14679 -26.88139 -25.87838 -24.10057 -23.40669 -22.91598 -21.37682 -20.66744 -19.71159 -18.89346 -18.47023 -18.18415 -17.64657 -17.48573 -17.10840 -16.75985 -16.48616 -16.46646 -16.17156 -15.80946 -15.40866 -14.94533 -14.82146 -14.64419 -14.39234 -14.35943 -14.18100 -13.95297 -13.75846 -13.38421 -13.27624 -13.08309 -12.95958 -12.85945 -12.77939 -12.50784 -12.41230 -12.22006 -12.07861 -11.95597 -11.90790 -11.70553 -11.56147 -11.52979 -11.32166 -11.28408 -11.18103 -10.83399 -10.65668 -10.58064 -9.61951 -8.18033 -6.32186 0.96493 1.42258 1.43753 1.49138 1.57005 1.63435 1.93224 2.42982 3.06435 3.15140 3.23544 3.39654 3.51347 3.67125 3.76050 3.84480 3.87335 3.98378 4.09936 4.17624 4.27179 4.32515 4.38831 4.43994 4.46948 4.49432 4.53628 4.67727 4.71763 4.73126 4.80764 4.82654 4.86255 4.95032 4.96407 5.02394 5.08543 5.11480 5.13323 5.20103 5.40185 5.46568 5.53621 5.54686 5.61385 5.84705 6.16841 6.34158 6.51795 6.63995 6.86381 7.21300 7.38216 8.94998 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002588 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.126571 B =10815.242069 C =10909.762273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.491 3.509 4 O -0.517 6.517 5 C -0.084 4.084 6 C 0.159 3.841 7 O -0.553 6.553 8 C -0.147 4.147 9 C -0.130 4.130 10 C 0.095 3.905 11 N -0.611 5.611 12 C 0.510 3.490 13 O -0.587 6.587 14 C -0.113 4.113 15 C 0.043 3.957 16 C -0.540 4.540 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.974 3.026 21 H -0.251 1.251 22 H -0.282 1.282 23 H -0.280 1.280 24 C 0.082 3.918 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.097 4.097 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.384 0.616 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.100 0.900 40 H -0.022 1.022 41 H -0.017 1.017 42 H 0.262 0.738 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 -16.916 -22.984 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.335 3.665 4 O -0.406 6.406 5 C -0.086 4.086 6 C 0.117 3.883 7 O -0.361 6.361 8 C -0.184 4.184 9 C -0.168 4.168 10 C -0.026 4.026 11 N -0.344 5.344 12 C 0.301 3.699 13 O -0.467 6.467 14 C -0.153 4.153 15 C 0.006 3.994 16 C -0.578 4.578 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.798 3.202 21 H -0.174 1.174 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.041 4.041 25 C -0.158 4.158 26 C -0.166 4.166 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.234 0.766 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.119 0.881 40 H -0.004 1.004 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.117 0.883 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.185 -17.652 -22.404 31.016 hybrid contribution 0.093 1.414 1.174 1.840 sum -12.093 -16.238 -21.230 29.336 Atomic orbital electron populations 1.23604 0.74543 1.05885 1.02597 1.86492 1.24885 1.31726 1.83371 1.22786 0.90548 0.81652 0.71547 1.90612 1.67357 1.36668 1.45936 1.21527 0.87510 0.94990 1.04564 1.20777 0.81441 0.92322 0.93736 1.86352 1.17926 1.35460 1.96342 1.22301 1.02945 0.95605 0.97576 1.21939 1.01325 0.95874 0.97693 1.22133 1.01665 0.94277 0.84543 1.48239 1.57173 1.10213 1.18817 1.21497 0.76102 0.91255 0.81091 1.90647 1.56568 1.61399 1.38065 1.21640 1.02252 0.90183 1.01203 1.18686 0.93667 0.95448 0.91616 1.21725 1.36610 0.95572 1.03849 0.90436 1.26153 0.95915 1.03294 0.95172 1.70187 1.41701 1.37893 1.08087 0.85267 0.77748 0.78449 0.78738 1.17429 1.20789 1.20589 1.22335 1.00474 0.82235 0.99059 1.22916 1.01074 0.94937 0.96875 1.22929 1.03899 0.96087 0.93648 1.22822 1.01555 0.94348 0.94747 0.92456 0.91370 0.84846 0.76567 0.89617 0.89597 0.90895 0.87303 0.87771 0.90414 0.87295 0.88144 1.00387 0.99859 0.92886 0.90397 0.91849 0.89064 0.91563 0.88299 0.89604 0.89787 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.84 8.67 -51.32 -0.44 -6.28 16 3 C 0.49 10.20 6.56 71.24 0.47 10.67 16 4 O -0.52 -12.72 11.83 21.95 0.26 -12.46 16 5 C -0.08 -1.68 0.46 -52.40 -0.02 -1.70 16 6 C 0.16 3.62 0.35 -10.72 0.00 3.61 16 7 O -0.55 -13.39 10.99 -148.98 -1.64 -15.02 16 8 C -0.15 -2.68 4.57 30.62 0.14 -2.54 16 9 C -0.13 -2.11 5.78 30.67 0.18 -1.94 16 10 C 0.10 2.04 6.34 86.35 0.55 2.59 16 11 N -0.61 -18.67 2.55 -818.73 -2.09 -20.76 16 12 C 0.51 20.88 7.70 87.66 0.67 21.55 16 13 O -0.59 -30.33 15.39 -3.03 -0.05 -30.38 16 14 C -0.11 -4.63 3.99 29.85 0.12 -4.52 16 15 C 0.04 2.46 4.26 29.85 0.13 2.59 16 16 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 17 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 19 N -0.94 -60.19 13.29 21.45 0.28 -59.91 16 20 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 21 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 C 0.08 2.46 5.04 86.36 0.44 2.90 16 25 C -0.12 -2.44 6.77 31.18 0.21 -2.23 16 26 C -0.13 -1.85 7.64 31.18 0.24 -1.61 16 27 C -0.10 -1.46 6.54 31.12 0.20 -1.26 16 28 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 29 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.38 9.10 6.86 -74.06 -0.51 8.59 16 32 H 0.09 1.76 5.81 -2.39 -0.01 1.75 16 33 H 0.09 1.32 7.72 -2.39 -0.02 1.31 16 34 H 0.07 1.16 6.69 -2.39 -0.02 1.14 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 2.07 5.94 -2.39 -0.01 2.06 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.11 3.80 7.69 -2.39 -0.02 3.78 16 39 H 0.10 3.68 7.94 -2.39 -0.02 3.66 16 40 H -0.02 -1.44 8.10 -2.39 -0.02 -1.46 16 41 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 42 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.08 2.41 5.76 -2.39 -0.01 2.40 16 44 H 0.06 2.32 6.91 -2.39 -0.02 2.30 16 45 H 0.09 2.16 7.29 -2.39 -0.02 2.15 16 46 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 47 H 0.10 1.29 6.86 -2.39 -0.02 1.27 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 50 H 0.10 1.63 7.42 -2.39 -0.02 1.61 16 Total: -1.00 -80.27 384.87 4.01 -76.26 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.44 Total: 23.04 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 5.21 Total: -1.00 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.80 Total: -80.67 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -1.87 Total: -64.14 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -80.27 4.01 -76.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888207575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.612 kcal (2) G-P(sol) polarization free energy of solvation -80.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds