Wall clock time and date at job start Tue Mar 31 2020 22:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99647 * 2 1 4 4 O 1.20829 * 120.00008 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99673 * 179.72105 * 3 2 1 6 6 C 1.52999 * 112.85169 * 175.54901 * 5 3 2 7 7 O 1.42901 * 109.50185 * 182.33911 * 6 5 3 8 8 C 1.53039 * 109.49609 * 302.43651 * 6 5 3 9 9 C 1.53044 * 109.54053 * 181.31575 * 8 6 5 10 10 C 1.53193 * 109.30900 * 298.63607 * 9 8 6 11 11 N 1.46927 * 108.77993 * 54.63309 * 10 9 8 12 12 C 1.34768 * 120.63029 * 126.36943 * 11 10 9 13 13 O 1.21286 * 119.99943 * 185.67215 * 12 11 10 14 14 C 1.50695 * 120.00279 * 5.67217 * 12 11 10 15 15 H 1.09004 * 109.47134 * 31.97809 * 14 12 11 16 16 C 1.52999 * 109.47424 * 271.98014 * 14 12 11 17 17 C 1.50699 * 109.47287 * 151.97746 * 14 12 11 18 18 H 1.08000 * 119.99819 * 2.53914 * 17 14 12 19 19 C 1.37881 * 119.99987 * 182.53844 * 17 14 12 20 20 N 1.31514 * 119.99931 * 197.42424 * 19 17 14 21 21 Si 1.86797 * 120.00176 * 17.42004 * 19 17 14 22 22 H 1.48497 * 109.47314 * 95.46949 * 21 19 17 23 23 H 1.48497 * 109.47041 * 215.47155 * 21 19 17 24 24 H 1.48498 * 109.47038 * 335.47161 * 21 19 17 25 25 C 1.46922 * 118.73675 * 306.39100 * 11 10 9 26 26 C 1.53785 * 113.61659 * 44.35458 * 5 3 2 27 27 C 1.54058 * 86.98484 * 270.83705 * 26 5 3 28 28 C 1.53782 * 113.61695 * 306.74334 * 5 3 2 29 29 H 1.09009 * 109.47071 * 60.00264 * 1 2 3 30 30 H 1.08995 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47713 * 300.00308 * 1 2 3 32 32 H 0.96697 * 113.99795 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.45923 * 301.33506 * 8 6 5 34 34 H 1.09003 * 109.46150 * 61.29322 * 8 6 5 35 35 H 1.08996 * 109.49682 * 178.68505 * 9 8 6 36 36 H 1.09002 * 109.52262 * 58.59560 * 9 8 6 37 37 H 1.09004 * 109.58760 * 294.84349 * 10 9 8 38 38 H 1.09003 * 109.58663 * 174.42753 * 10 9 8 39 39 H 1.09001 * 109.47217 * 65.03212 * 16 14 12 40 40 H 1.09003 * 109.47438 * 185.03675 * 16 14 12 41 41 H 1.08996 * 109.46954 * 305.03398 * 16 14 12 42 42 H 0.96999 * 120.00136 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.58884 * 293.82222 * 25 11 10 44 44 H 1.08994 * 109.58782 * 173.39357 * 25 11 10 45 45 H 1.08998 * 113.61070 * 25.42486 * 26 5 3 46 46 H 1.08999 * 113.61868 * 156.33703 * 26 5 3 47 47 H 1.09000 * 113.61892 * 220.02018 * 27 26 5 48 48 H 1.08999 * 113.69098 * 89.12335 * 27 26 5 49 49 H 1.08998 * 113.61517 * 203.66347 * 28 5 3 50 50 H 1.09003 * 113.61664 * 334.48684 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 0.0064 6 6 4.0865 2.7095 -0.1040 7 8 5.5148 2.6971 -0.1461 8 6 3.5427 3.3532 -1.3815 9 6 4.0888 4.7771 -1.5097 10 6 3.6202 5.6091 -0.3118 11 7 4.0139 4.9209 0.9251 12 6 4.7252 5.5640 1.8721 13 8 5.1324 4.9581 2.8407 14 6 5.0149 7.0358 1.7275 15 1 4.1900 7.5186 1.2034 16 6 6.3066 7.2255 0.9298 17 6 5.1724 7.6533 3.0931 18 1 5.1136 7.0339 3.9758 19 6 5.3917 9.0090 3.2155 20 7 5.8643 9.4998 4.3404 21 14 5.0177 10.1487 1.7835 22 1 3.6584 10.7229 1.9497 23 1 6.0178 11.2460 1.7499 24 1 5.0797 9.3834 0.5125 25 6 3.6178 3.5182 1.1098 26 6 4.2385 0.2989 -0.9736 27 6 4.2344 -0.7287 0.1741 28 6 4.2207 0.4679 1.1401 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 5.9139 3.5751 -0.2157 33 1 3.8543 2.7657 -2.2452 34 1 2.4540 3.3844 -1.3375 35 1 3.7198 5.2266 -2.4316 36 1 5.1783 4.7491 -1.5292 37 1 2.5356 5.7145 -0.3420 38 1 4.0860 6.5940 -0.3463 39 1 6.1631 6.8591 -0.0867 40 1 6.5641 8.2843 0.9016 41 1 7.1130 6.6681 1.4064 42 1 6.0182 10.4536 4.4267 43 1 2.5331 3.4530 1.1955 44 1 4.0822 3.1233 2.0133 45 1 3.6042 0.0186 -1.8146 46 1 5.2381 0.6070 -1.2801 47 1 5.1453 -1.3246 0.2301 48 1 3.3291 -1.3344 0.2165 49 1 5.2154 0.8222 1.4103 50 1 3.5727 0.3253 2.0049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888208987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:17 Heat of formation + Delta-G solvation = -160.218510 kcal Electronic energy + Delta-G solvation = -32594.369531 eV Core-core repulsion = 28394.052493 eV Total energy + Delta-G solvation = -4200.317038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.69244 -41.18354 -39.85097 -38.36986 -37.53144 -36.20720 -35.73766 -33.50539 -33.09727 -31.59287 -29.05122 -27.47955 -27.22104 -27.01191 -26.22745 -24.23775 -23.69088 -22.94537 -21.39275 -20.65310 -19.67867 -18.92693 -18.45045 -18.38107 -17.48982 -17.46372 -17.12313 -17.01380 -16.44789 -16.13854 -15.91492 -15.52871 -15.39773 -14.95499 -14.84056 -14.72160 -14.46820 -14.36687 -14.15636 -13.94995 -13.77991 -13.38655 -13.33070 -13.06845 -12.94819 -12.82925 -12.77222 -12.55426 -12.42197 -12.24537 -12.15324 -12.03567 -11.87334 -11.69975 -11.51931 -11.47137 -11.36591 -11.31015 -11.14806 -10.80404 -10.59473 -10.42078 -9.53747 -8.31219 -6.33126 0.98192 1.36768 1.41531 1.50420 1.51831 1.80206 2.04140 2.36544 3.01660 3.08068 3.25802 3.42625 3.53019 3.73943 3.78111 3.86511 3.91125 3.99609 4.15154 4.19163 4.28738 4.33565 4.41223 4.45169 4.47925 4.53833 4.67082 4.69919 4.73048 4.74367 4.82295 4.82835 4.84109 4.88007 4.96804 4.98276 5.04904 5.09803 5.11686 5.13189 5.21581 5.39707 5.48889 5.53846 5.55856 5.63087 6.20820 6.48246 6.54830 6.65969 6.76191 7.24702 7.40665 8.86941 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.003318 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.765244 B = 8437.396056 C = 8530.672679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.491 3.509 4 O -0.518 6.518 5 C -0.084 4.084 6 C 0.161 3.839 7 O -0.551 6.551 8 C -0.147 4.147 9 C -0.128 4.128 10 C 0.092 3.908 11 N -0.615 5.615 12 C 0.528 3.472 13 O -0.586 6.586 14 C 0.004 3.996 15 H 0.065 0.935 16 C -0.131 4.131 17 C -0.531 4.531 18 H 0.017 0.983 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.940 3.060 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.208 1.208 25 C 0.082 3.918 26 C -0.097 4.097 27 C -0.127 4.127 28 C -0.121 4.121 29 H 0.066 0.934 30 H 0.134 0.866 31 H 0.056 0.944 32 H 0.384 0.616 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.268 0.732 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -20.157 -21.166 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.335 3.665 4 O -0.407 6.407 5 C -0.086 4.086 6 C 0.119 3.881 7 O -0.359 6.359 8 C -0.184 4.184 9 C -0.166 4.166 10 C -0.030 4.030 11 N -0.349 5.349 12 C 0.319 3.681 13 O -0.465 6.465 14 C -0.017 4.017 15 H 0.082 0.918 16 C -0.188 4.188 17 C -0.569 4.569 18 H 0.035 0.965 19 C -0.183 4.183 20 N -0.582 5.582 21 Si 0.761 3.239 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.129 1.129 25 C -0.041 4.041 26 C -0.134 4.134 27 C -0.164 4.164 28 C -0.158 4.158 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.109 0.891 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.825 -20.688 -20.509 30.438 hybrid contribution -0.328 1.663 0.952 1.944 sum -9.153 -19.025 -19.557 28.778 Atomic orbital electron populations 1.23602 0.74599 1.05879 1.02555 1.86491 1.24823 1.31599 1.83408 1.22788 0.90542 0.81647 0.71548 1.90624 1.67373 1.36785 1.45904 1.21527 0.87515 0.95137 1.04428 1.20751 0.81556 0.91690 0.94099 1.86330 1.17931 1.34983 1.96695 1.22295 1.02434 0.96819 0.96873 1.21936 1.01798 0.94611 0.98241 1.22131 1.01072 0.97220 0.82558 1.48235 1.54835 1.12015 1.19831 1.21315 0.75650 0.90340 0.80832 1.90556 1.53437 1.69420 1.33118 1.19173 0.97394 0.88509 0.96653 0.91772 1.21993 0.96569 1.01604 0.98682 1.20929 1.50818 0.93528 0.91583 0.96509 1.25999 0.93051 0.99689 0.99547 1.70170 1.43773 1.14011 1.30224 0.85972 0.78196 0.78224 0.81482 1.20205 1.20798 1.12936 1.22339 1.00589 0.81858 0.99311 1.22865 1.01521 0.92914 0.96105 1.22945 1.03910 0.95722 0.93851 1.22892 1.01056 0.96341 0.95550 0.91477 0.84745 0.92507 0.76616 0.89322 0.89933 0.87161 0.90619 0.90826 0.88363 0.90253 0.92640 0.94566 0.92310 0.90449 0.92039 0.89594 0.87744 0.89577 0.88238 0.89091 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -6.03 8.66 -51.45 -0.45 -6.48 16 3 C 0.49 10.83 6.58 71.23 0.47 11.30 16 4 O -0.52 -13.78 11.80 21.96 0.26 -13.52 16 5 C -0.08 -1.80 0.46 -52.40 -0.02 -1.82 16 6 C 0.16 3.95 0.35 -10.71 0.00 3.94 16 7 O -0.55 -14.06 10.99 -148.98 -1.64 -15.69 16 8 C -0.15 -2.92 4.55 30.62 0.14 -2.78 16 9 C -0.13 -2.34 5.78 30.67 0.18 -2.16 16 10 C 0.09 2.35 6.10 86.36 0.53 2.88 16 11 N -0.62 -21.46 2.55 -818.92 -2.09 -23.55 16 12 C 0.53 24.35 6.76 87.66 0.59 24.94 16 13 O -0.59 -33.02 15.30 -3.05 -0.05 -33.06 16 14 C 0.00 0.20 1.32 -12.29 -0.02 0.19 16 15 H 0.06 2.69 5.27 -2.38 -0.01 2.68 16 16 C -0.13 -5.18 8.29 71.98 0.60 -4.58 16 17 C -0.53 -32.24 8.78 25.60 0.22 -32.02 16 18 H 0.02 1.20 7.31 -2.91 -0.02 1.18 16 19 C 0.01 0.87 5.30 84.66 0.45 1.32 16 20 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 21 Si 0.94 41.56 25.75 68.60 1.77 43.32 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.21 -7.53 5.55 99.48 0.55 -6.98 16 25 C 0.08 2.72 5.04 86.37 0.44 3.16 16 26 C -0.10 -1.53 6.68 31.22 0.21 -1.33 16 27 C -0.13 -1.93 7.64 31.22 0.24 -1.70 16 28 C -0.12 -2.61 6.65 31.12 0.21 -2.40 16 29 H 0.07 0.78 8.13 -2.38 -0.02 0.76 16 30 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.38 9.65 6.86 -74.06 -0.51 9.14 16 33 H 0.09 1.45 7.88 -2.39 -0.02 1.43 16 34 H 0.08 1.85 5.83 -2.39 -0.01 1.83 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.30 6.70 -2.39 -0.02 1.29 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.10 2.48 4.88 -2.39 -0.01 2.46 16 39 H 0.08 2.31 7.31 -2.39 -0.02 2.30 16 40 H 0.05 2.20 4.93 -2.39 -0.01 2.19 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 43 H 0.08 2.66 5.76 -2.39 -0.01 2.65 16 44 H 0.06 2.44 6.77 -2.39 -0.02 2.42 16 45 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 46 H 0.10 1.72 7.27 -2.39 -0.02 1.71 16 47 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.10 1.37 6.85 -2.39 -0.02 1.35 16 49 H 0.09 2.28 7.44 -2.39 -0.02 2.26 16 50 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 Total: -1.00 -82.08 372.11 3.83 -78.24 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.31 Total: 30.61 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.42 Total: 0.46 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -1.79 Total: -83.89 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -1.87 Total: -68.75 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.77 Total: 43.32 kcal Total: -82.08 3.83 -78.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888208987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.974 kcal (2) G-P(sol) polarization free energy of solvation -82.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds