Wall clock time and date at job start Tue Mar 31 2020 23:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99901 * 2 1 4 4 C 1.50696 * 109.47341 * 293.95682 * 3 2 1 5 5 H 1.08008 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00161 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99949 * 359.97438 * 6 4 3 9 9 H 1.48509 * 109.46911 * 90.00533 * 8 6 4 10 10 H 1.48503 * 109.47249 * 210.00245 * 8 6 4 11 11 H 1.48501 * 109.47295 * 330.00291 * 8 6 4 12 12 C 1.46894 * 110.99955 * 123.95540 * 2 1 3 13 13 C 1.53003 * 109.47283 * 66.04903 * 12 2 1 14 14 H 1.09004 * 109.47149 * 305.00089 * 13 12 2 15 15 O 1.42902 * 109.47042 * 64.99584 * 13 12 2 16 16 C 1.52997 * 109.47071 * 184.99927 * 13 12 2 17 17 N 1.46904 * 109.46950 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00029 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47254 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 17 21 21 N 1.28334 * 124.90244 * 89.69469 * 20 19 18 22 22 C 1.33492 * 117.83820 * 179.85712 * 21 20 19 23 23 C 1.33865 * 113.17768 * 0.39749 * 22 21 20 24 24 S 1.70748 * 124.90522 * 270.00281 * 20 19 18 25 25 C 1.51719 * 110.89080 * 179.82119 * 23 22 21 26 26 C 1.54301 * 104.80611 * 17.23299 * 25 23 22 27 27 C 1.52612 * 137.15299 * 180.02562 * 22 21 20 28 28 H 1.08997 * 109.46962 * 296.04243 * 1 2 3 29 29 H 1.09003 * 109.47103 * 56.04365 * 1 2 3 30 30 H 1.09003 * 109.46735 * 176.04315 * 1 2 3 31 31 H 1.09003 * 109.47141 * 53.95361 * 3 2 1 32 32 H 1.09000 * 109.47139 * 173.95135 * 3 2 1 33 33 H 0.97004 * 120.00209 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47742 * 306.04590 * 12 2 1 35 35 H 1.09010 * 109.46775 * 186.04408 * 12 2 1 36 36 H 0.96695 * 113.99730 * 60.00759 * 15 13 12 37 37 H 1.08995 * 109.47319 * 59.99998 * 16 13 12 38 38 H 1.09003 * 109.47435 * 299.99322 * 16 13 12 39 39 H 1.00908 * 110.99583 * 303.94989 * 17 16 13 40 40 H 1.09002 * 109.47043 * 299.99792 * 18 17 16 41 41 H 1.09001 * 109.47354 * 59.99854 * 18 17 16 42 42 H 1.09002 * 109.47153 * 300.00004 * 19 18 17 43 43 H 1.08998 * 109.47533 * 59.99633 * 19 18 17 44 44 H 1.08999 * 110.37127 * 136.06517 * 25 23 22 45 45 H 1.09003 * 110.36861 * 258.29038 * 25 23 22 46 46 H 1.08999 * 110.97037 * 91.91735 * 26 25 23 47 47 H 1.08999 * 110.97194 * 215.64992 * 26 25 23 48 48 H 1.09006 * 110.32091 * 44.05237 * 27 22 21 49 49 H 1.09001 * 110.32056 * 281.85164 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 1.7143 3.9391 -2.6617 8 14 3.0008 4.2758 -0.2313 9 1 4.4533 4.0624 -0.4557 10 1 2.6935 5.7257 -0.3235 11 1 2.6295 3.7759 1.1169 12 6 1.9954 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5532 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1802 16 6 2.0700 -3.0199 2.2130 17 7 1.7211 -4.4378 2.0520 18 6 2.1276 -5.2169 3.2292 19 6 1.7480 -6.6849 3.0253 20 6 2.1655 -7.4842 4.2326 21 7 1.4339 -7.6884 5.2670 22 6 1.9457 -8.4224 6.2576 23 6 3.1934 -8.8410 6.0127 24 16 3.6831 -8.2428 4.4251 25 6 3.7248 -9.6646 7.1708 26 6 2.4721 -10.0639 7.9783 27 6 1.4953 -8.9234 7.6269 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1083 33 1 1.9895 4.8550 -2.8240 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1755 36 1 3.2601 -2.7167 -0.1361 37 1 1.5634 -2.6180 3.0904 38 1 3.1483 -2.9237 2.3400 39 1 0.7352 -4.5490 1.8681 40 1 3.2062 -5.1355 3.3641 41 1 1.6207 -4.8304 4.1135 42 1 0.6694 -6.7660 2.8907 43 1 2.2545 -7.0717 2.1410 44 1 4.2370 -10.5529 6.8011 45 1 4.3989 -9.0664 7.7839 46 1 2.0839 -11.0265 7.6455 47 1 2.6856 -10.0799 9.0470 48 1 0.4745 -9.3021 7.5745 49 1 1.5659 -8.1240 8.3645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905568986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:40 Heat of formation + Delta-G solvation = 3.984240 kcal Electronic energy + Delta-G solvation = -25784.179901 eV Core-core repulsion = 22066.028851 eV Total energy + Delta-G solvation = -3718.151050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72183 -38.44550 -37.16535 -36.14665 -35.17712 -32.47791 -32.12626 -29.69143 -28.96393 -27.99603 -27.38781 -25.94092 -24.22913 -23.01672 -22.38802 -21.51786 -21.05882 -20.10738 -19.31151 -18.34108 -16.93815 -16.66249 -16.37471 -15.87321 -15.52861 -15.27619 -14.89033 -14.52946 -14.42376 -14.31450 -14.13055 -13.97247 -13.74257 -13.43254 -13.36164 -12.98681 -12.76299 -12.61648 -12.31820 -12.09548 -12.00442 -11.78656 -11.65736 -11.57912 -11.50360 -11.42311 -11.20104 -10.97263 -10.77985 -10.52461 -10.28492 -10.01173 -9.89183 -9.58859 -9.52304 -9.21837 -8.92962 -8.63175 -8.55943 -7.32445 -6.03721 -4.00854 0.33854 0.82504 1.41912 2.33913 3.23679 3.27970 3.35382 3.36676 3.79631 3.98849 4.24553 4.39583 4.42282 4.55176 4.61984 4.68808 4.78660 4.86737 4.88957 5.06510 5.08147 5.10035 5.19166 5.20443 5.23378 5.29170 5.32007 5.40211 5.46837 5.52884 5.55150 5.55754 5.61298 5.62491 5.82768 5.93933 6.10425 6.21881 6.31426 6.68380 6.71109 6.86283 6.99365 7.12227 7.35740 7.59391 7.90498 8.00462 8.14122 8.67567 9.06026 9.57811 11.09469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.001508 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.203288 B =18564.270417 C =18751.205872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.117 3.883 14 H 0.095 0.905 15 O -0.534 6.534 16 C 0.027 3.973 17 N -0.676 5.676 18 C 0.066 3.934 19 C -0.042 4.042 20 C 0.064 3.936 21 N -0.466 5.466 22 C 0.044 3.956 23 C -0.257 4.257 24 S 0.143 5.857 25 C -0.038 4.038 26 C -0.116 4.116 27 C -0.041 4.041 28 H 0.008 0.992 29 H 0.081 0.919 30 H 0.050 0.950 31 H -0.014 1.014 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.368 0.632 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.344 0.656 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 -29.902 22.497 37.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.056 3.944 14 H 0.112 0.888 15 O -0.337 6.337 16 C -0.103 4.103 17 N -0.307 5.307 18 C -0.064 4.064 19 C -0.083 4.083 20 C -0.216 4.216 21 N -0.179 5.179 22 C -0.086 4.086 23 C -0.378 4.378 24 S 0.400 5.600 25 C -0.078 4.078 26 C -0.155 4.155 27 C -0.081 4.081 28 H 0.027 0.973 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.004 0.996 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.162 0.838 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.844 -30.027 20.751 36.702 hybrid contribution -0.280 1.404 3.026 3.347 sum 3.564 -28.623 23.776 37.380 Atomic orbital electron populations 1.22298 0.88351 1.00002 1.00708 1.61846 1.07275 1.16009 1.39171 1.20197 0.94794 0.84193 0.97265 1.21045 1.35558 0.97158 1.00853 0.90024 1.24900 0.95840 0.97348 0.95262 1.69895 1.46907 1.13273 1.23854 0.86873 0.80910 0.79312 0.82684 1.20156 1.21195 1.19434 1.22787 1.00527 0.94301 0.93216 1.21861 0.97759 0.90361 0.84377 0.88769 1.86610 1.22904 1.83836 1.40378 1.22731 1.01621 0.87863 0.98111 1.60337 1.23957 1.08854 1.37602 1.21891 1.01151 0.91425 0.91982 1.20251 1.03485 0.93156 0.91406 1.26718 0.93706 1.02618 0.98594 1.65389 1.36102 1.16064 1.00377 1.21655 0.92195 0.97890 0.96883 1.27072 1.00676 1.09523 1.00499 1.83861 1.17953 1.47049 1.11111 1.20660 0.98016 0.97864 0.91265 1.22360 0.94225 0.98349 1.00566 1.20867 1.00271 0.97714 0.89212 0.97321 0.90047 0.93154 0.99612 0.95970 0.92682 0.95466 0.91094 0.78547 0.94546 0.90605 0.83800 0.90787 0.94737 0.88631 0.88304 0.90345 0.89726 0.90301 0.89413 0.89959 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.14 60.07 0.55 1.23 16 2 N -0.52 -10.93 4.70 -244.37 -1.15 -12.08 16 3 C 0.16 3.96 3.79 -4.98 -0.02 3.95 16 4 C -0.51 -14.63 9.01 -34.44 -0.31 -14.94 16 5 H 0.08 2.57 7.37 -52.48 -0.39 2.18 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 8 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 12 C 0.02 0.35 4.59 -3.83 -0.02 0.33 16 13 C 0.12 1.59 3.13 -26.73 -0.08 1.51 16 14 H 0.09 1.33 6.34 -51.93 -0.33 1.00 16 15 O -0.53 -8.15 13.15 -35.23 -0.46 -8.61 16 16 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 17 N -0.68 -6.72 6.37 -113.78 -0.72 -7.45 16 18 C 0.07 0.59 5.67 -3.83 -0.02 0.57 16 19 C -0.04 -0.34 6.05 -27.89 -0.17 -0.51 16 20 C 0.06 0.61 6.62 -13.74 -0.09 0.52 16 21 N -0.47 -5.22 10.54 -7.24 -0.08 -5.29 16 22 C 0.04 0.42 7.70 -82.45 -0.63 -0.21 16 23 C -0.26 -2.14 7.42 -35.34 -0.26 -2.40 16 24 S 0.14 1.17 23.18 -107.50 -2.49 -1.32 16 25 C -0.04 -0.20 6.80 -26.70 -0.18 -0.38 16 26 C -0.12 -0.45 7.12 -25.42 -0.18 -0.63 16 27 C -0.04 -0.25 6.81 -26.30 -0.18 -0.43 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 30 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 31 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 32 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.07 1.11 7.93 -51.92 -0.41 0.70 16 36 H 0.37 4.63 9.04 45.56 0.41 5.04 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.34 3.25 8.73 -39.29 -0.34 2.91 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -34.04 404.16 -12.01 -46.04 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.58 Total: 1.96 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.72 Total: -9.25 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -1.18 Total: -51.85 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.46 Total: -8.61 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.04 -12.01 -46.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905568986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.029 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds