Wall clock time and date at job start Tue Mar 31 2020 23:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99901 * 2 1 4 4 C 1.50696 * 109.47341 * 293.95682 * 3 2 1 5 5 H 1.08008 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00161 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99949 * 359.97438 * 6 4 3 9 9 H 1.48509 * 109.46911 * 90.00533 * 8 6 4 10 10 H 1.48503 * 109.47249 * 210.00245 * 8 6 4 11 11 H 1.48501 * 109.47295 * 330.00291 * 8 6 4 12 12 C 1.46894 * 110.99955 * 123.95540 * 2 1 3 13 13 C 1.53003 * 109.47283 * 66.04903 * 12 2 1 14 14 H 1.09004 * 109.47149 * 305.00089 * 13 12 2 15 15 O 1.42902 * 109.47042 * 64.99584 * 13 12 2 16 16 C 1.52997 * 109.47071 * 184.99927 * 13 12 2 17 17 N 1.46904 * 109.46950 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00029 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47254 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 17 21 21 N 1.28334 * 124.90244 * 89.69469 * 20 19 18 22 22 C 1.33492 * 117.83820 * 179.85712 * 21 20 19 23 23 C 1.33865 * 113.17768 * 0.39749 * 22 21 20 24 24 S 1.70748 * 124.90522 * 270.00281 * 20 19 18 25 25 C 1.51719 * 110.89080 * 179.82119 * 23 22 21 26 26 C 1.54301 * 104.80611 * 17.23299 * 25 23 22 27 27 C 1.52612 * 137.15299 * 180.02562 * 22 21 20 28 28 H 1.08997 * 109.46962 * 296.04243 * 1 2 3 29 29 H 1.09003 * 109.47103 * 56.04365 * 1 2 3 30 30 H 1.09003 * 109.46735 * 176.04315 * 1 2 3 31 31 H 1.09003 * 109.47141 * 53.95361 * 3 2 1 32 32 H 1.09000 * 109.47139 * 173.95135 * 3 2 1 33 33 H 0.97004 * 120.00209 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47742 * 306.04590 * 12 2 1 35 35 H 1.09010 * 109.46775 * 186.04408 * 12 2 1 36 36 H 0.96695 * 113.99730 * 60.00759 * 15 13 12 37 37 H 1.08995 * 109.47319 * 59.99998 * 16 13 12 38 38 H 1.09003 * 109.47435 * 299.99322 * 16 13 12 39 39 H 1.00908 * 110.99583 * 303.94989 * 17 16 13 40 40 H 1.09002 * 109.47043 * 299.99792 * 18 17 16 41 41 H 1.09001 * 109.47354 * 59.99854 * 18 17 16 42 42 H 1.09002 * 109.47153 * 300.00004 * 19 18 17 43 43 H 1.08998 * 109.47533 * 59.99633 * 19 18 17 44 44 H 1.08999 * 110.37127 * 136.06517 * 25 23 22 45 45 H 1.09003 * 110.36861 * 258.29038 * 25 23 22 46 46 H 1.08999 * 110.97037 * 91.91735 * 26 25 23 47 47 H 1.08999 * 110.97194 * 215.64992 * 26 25 23 48 48 H 1.09006 * 110.32091 * 44.05237 * 27 22 21 49 49 H 1.09001 * 110.32056 * 281.85164 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 1.7143 3.9391 -2.6617 8 14 3.0008 4.2758 -0.2313 9 1 4.4533 4.0624 -0.4557 10 1 2.6935 5.7257 -0.3235 11 1 2.6295 3.7759 1.1169 12 6 1.9954 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5532 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1802 16 6 2.0700 -3.0199 2.2130 17 7 1.7211 -4.4378 2.0520 18 6 2.1276 -5.2169 3.2292 19 6 1.7480 -6.6849 3.0253 20 6 2.1655 -7.4842 4.2326 21 7 1.4339 -7.6884 5.2670 22 6 1.9457 -8.4224 6.2576 23 6 3.1934 -8.8410 6.0127 24 16 3.6831 -8.2428 4.4251 25 6 3.7248 -9.6646 7.1708 26 6 2.4721 -10.0639 7.9783 27 6 1.4953 -8.9234 7.6269 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1083 33 1 1.9895 4.8550 -2.8240 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1755 36 1 3.2601 -2.7167 -0.1361 37 1 1.5634 -2.6180 3.0904 38 1 3.1483 -2.9237 2.3400 39 1 0.7352 -4.5490 1.8681 40 1 3.2062 -5.1355 3.3641 41 1 1.6207 -4.8304 4.1135 42 1 0.6694 -6.7660 2.8907 43 1 2.2545 -7.0717 2.1410 44 1 4.2370 -10.5529 6.8011 45 1 4.3989 -9.0664 7.7839 46 1 2.0839 -11.0265 7.6455 47 1 2.6856 -10.0799 9.0470 48 1 0.4745 -9.3021 7.5745 49 1 1.5659 -8.1240 8.3645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905568986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:39 Heat of formation + Delta-G solvation = -22.926555 kcal Electronic energy + Delta-G solvation = -25785.346841 eV Core-core repulsion = 22066.028851 eV Total energy + Delta-G solvation = -3719.317990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31472 -39.62094 -37.97175 -37.21830 -36.21859 -34.59427 -32.94532 -31.00480 -29.51976 -29.39703 -28.34379 -27.19561 -25.40127 -24.10044 -23.03252 -22.52624 -21.87345 -21.67448 -19.93894 -19.03228 -18.91991 -17.62112 -17.04133 -16.88621 -16.73584 -16.26110 -16.11894 -16.02049 -15.42312 -15.29379 -15.14985 -14.89150 -14.69149 -14.50718 -14.13509 -14.03191 -13.88284 -13.74399 -13.41349 -13.33357 -12.96281 -12.79752 -12.64349 -12.51944 -12.40606 -12.28782 -12.20306 -12.14260 -12.12920 -11.91345 -11.84848 -11.61681 -11.48892 -10.78328 -10.69428 -10.55538 -10.22302 -9.53644 -9.41716 -8.95972 -8.27889 -6.31627 -0.30018 0.22175 0.77870 1.34278 1.36094 1.46516 1.67578 2.34298 2.62413 2.95041 3.05196 3.36229 3.55712 3.72512 3.77147 3.90032 4.03264 4.06280 4.10604 4.11439 4.18411 4.33616 4.43991 4.47831 4.50516 4.56197 4.61229 4.64239 4.66165 4.71231 4.75539 4.78558 4.84324 4.89622 4.93483 5.01210 5.01877 5.08402 5.12532 5.24849 5.25503 5.26373 5.52956 5.90415 5.99859 6.35197 6.35917 6.66873 6.70824 6.75093 7.08437 7.31936 8.88976 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.001508 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.203288 B =18564.270417 C =18751.205872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.172 3.828 4 C -0.518 4.518 5 H 0.035 0.965 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.251 1.251 12 C 0.021 3.979 13 C 0.126 3.874 14 H 0.089 0.911 15 O -0.554 6.554 16 C 0.038 3.962 17 N -0.680 5.680 18 C 0.076 3.924 19 C -0.036 4.036 20 C 0.049 3.951 21 N -0.497 5.497 22 C 0.013 3.987 23 C -0.261 4.261 24 S 0.155 5.845 25 C -0.040 4.040 26 C -0.106 4.106 27 C -0.043 4.043 28 H 0.020 0.980 29 H 0.045 0.955 30 H 0.076 0.924 31 H -0.013 1.013 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.379 0.621 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.346 0.654 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.081 0.919 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -31.220 25.490 40.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.044 3.956 4 C -0.556 4.556 5 H 0.053 0.947 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.175 1.175 12 C -0.108 4.108 13 C 0.066 3.934 14 H 0.107 0.893 15 O -0.360 6.360 16 C -0.092 4.092 17 N -0.312 5.312 18 C -0.055 4.055 19 C -0.077 4.077 20 C -0.231 4.231 21 N -0.212 5.212 22 C -0.117 4.117 23 C -0.382 4.382 24 S 0.413 5.587 25 C -0.080 4.080 26 C -0.145 4.145 27 C -0.083 4.083 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.004 0.996 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.227 0.773 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.165 0.835 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.130 0.870 48 H 0.100 0.900 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.378 -31.379 23.758 39.724 hybrid contribution -0.801 1.719 2.024 2.774 sum 4.576 -29.660 25.782 39.565 Atomic orbital electron populations 1.22214 0.87849 1.01108 0.99643 1.61729 1.07986 1.14388 1.42250 1.19953 0.95137 0.85928 0.94534 1.21288 1.34926 0.97557 1.01863 0.94691 1.25883 0.97054 0.98401 0.97749 1.70062 1.48612 1.13918 1.26401 0.85672 0.79420 0.77568 0.79967 1.18842 1.20759 1.17522 1.22904 1.00911 0.95123 0.91820 1.21756 0.97395 0.88996 0.85242 0.89316 1.86579 1.24051 1.83899 1.41437 1.22544 1.02139 0.87923 0.96591 1.60316 1.24280 1.08468 1.38096 1.21790 1.01034 0.91535 0.91114 1.20208 1.03500 0.92663 0.91328 1.26891 0.94376 1.03118 0.98699 1.65404 1.37329 1.17120 1.01306 1.22256 0.93137 0.98363 0.97924 1.27607 1.00562 1.09139 1.00889 1.83723 1.16992 1.46636 1.11383 1.20848 0.98788 0.97988 0.90346 1.22393 0.92769 0.97518 1.01825 1.21027 1.00894 0.98623 0.87731 0.96158 0.93634 0.90574 0.99582 0.95240 0.92435 0.94202 0.90272 0.77301 0.93800 0.89759 0.83509 0.90614 0.95583 0.88762 0.87526 0.89157 0.88574 0.89825 0.86979 0.90039 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.14 127.69 1.17 2.73 16 2 N -0.54 -22.33 4.70 -927.05 -4.36 -26.69 16 3 C 0.17 8.28 3.79 85.56 0.32 8.61 16 4 C -0.52 -30.60 9.01 25.60 0.23 -30.37 16 5 H 0.03 2.32 7.37 -2.91 -0.02 2.30 16 6 C 0.01 0.37 5.47 84.65 0.46 0.83 16 7 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 8 Si 0.95 44.22 27.47 68.60 1.88 46.11 16 9 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 12 C 0.02 0.65 4.59 86.31 0.40 1.05 16 13 C 0.13 3.19 3.13 30.59 0.10 3.29 16 14 H 0.09 2.34 6.34 -2.39 -0.02 2.33 16 15 O -0.55 -16.12 13.15 -148.98 -1.96 -18.08 16 16 C 0.04 0.73 5.35 86.30 0.46 1.19 16 17 N -0.68 -12.34 6.37 -513.89 -3.27 -15.61 16 18 C 0.08 1.25 5.67 86.30 0.49 1.74 16 19 C -0.04 -0.56 6.05 29.85 0.18 -0.38 16 20 C 0.05 0.91 6.62 88.62 0.59 1.50 16 21 N -0.50 -11.09 10.54 -176.81 -1.86 -12.95 16 22 C 0.01 0.24 7.70 41.93 0.32 0.56 16 23 C -0.26 -4.05 7.42 25.02 0.19 -3.86 16 24 S 0.16 2.42 23.18 -56.49 -1.31 1.11 16 25 C -0.04 -0.32 6.80 30.61 0.21 -0.11 16 26 C -0.11 -0.57 7.12 31.45 0.22 -0.35 16 27 C -0.04 -0.48 6.81 30.88 0.21 -0.27 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.04 2.07 6.76 -2.39 -0.02 2.05 16 30 H 0.08 2.52 6.37 -2.39 -0.02 2.51 16 31 H -0.01 -0.64 7.18 -2.39 -0.02 -0.66 16 32 H 0.03 1.38 7.36 -2.39 -0.02 1.36 16 33 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 34 H 0.04 1.13 8.12 -2.39 -0.02 1.11 16 35 H 0.08 2.27 7.93 -2.38 -0.02 2.25 16 36 H 0.38 8.92 9.04 -74.06 -0.67 8.25 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.35 6.04 8.73 -89.69 -0.78 5.25 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 45 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.20 404.16 -5.59 -80.79 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.55 Total: 19.09 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 5.55 Total: -13.85 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -9.20 Total: -115.17 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.96 Total: -18.08 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.11 kcal Total: -75.20 -5.59 -80.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905568986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.860 kcal (2) G-P(sol) polarization free energy of solvation -75.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds