Wall clock time and date at job start Tue Mar 31 2020 23:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81394 * 103.00178 * 2 1 4 4 C 1.53008 * 109.47586 * 179.97438 * 3 2 1 5 5 C 1.53115 * 109.52463 * 175.00202 * 4 3 2 6 6 C 1.53037 * 109.27490 * 177.62758 * 5 4 3 7 7 N 1.46854 * 109.52114 * 300.81698 * 6 5 4 8 8 C 1.46897 * 110.99875 * 185.84294 * 7 6 5 9 9 C 1.50700 * 109.47159 * 170.00153 * 8 7 6 10 10 O 1.21283 * 119.99722 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00216 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00157 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47390 * 270.00017 * 12 11 9 14 14 H 1.08001 * 120.00425 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99997 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99547 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47146 * 90.00221 * 17 15 13 19 19 H 1.48505 * 109.46836 * 209.99793 * 17 15 13 20 20 H 1.48493 * 109.47533 * 329.99811 * 17 15 13 21 21 C 1.46506 * 120.00084 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47035 * 270.00167 * 21 11 9 23 23 C 1.47196 * 109.47012 * 179.97438 * 22 21 11 24 24 N 9.00930 * 162.01056 * 5.83996 * 4 1 2 25 25 C 1.46848 * 111.19539 * 61.74495 * 7 6 5 26 26 C 1.53033 * 109.52323 * 298.25713 * 25 7 6 27 27 H 1.08991 * 109.47086 * 300.00116 * 1 2 3 28 28 H 1.09005 * 109.47086 * 60.00013 * 1 2 3 29 29 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47055 * 59.99862 * 3 2 1 31 31 H 1.08998 * 109.47632 * 299.99876 * 3 2 1 32 32 H 1.08998 * 109.51588 * 54.87361 * 4 3 2 33 33 H 1.08999 * 109.50396 * 57.68423 * 5 4 3 34 34 H 1.08999 * 109.50215 * 297.55902 * 5 4 3 35 35 H 1.08995 * 109.46021 * 180.80570 * 6 5 4 36 36 H 1.08994 * 109.46030 * 60.83039 * 6 5 4 37 37 H 1.09000 * 109.47093 * 49.99861 * 8 7 6 38 38 H 1.08998 * 109.47193 * 289.99910 * 8 7 6 39 39 H 1.09001 * 109.47057 * 30.00532 * 12 11 9 40 40 H 1.08999 * 109.47333 * 150.00092 * 12 11 9 41 41 H 0.96998 * 119.99696 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.47073 * 29.99849 * 21 11 9 43 43 H 1.09000 * 109.47212 * 149.99932 * 21 11 9 44 44 H 1.09004 * 109.46930 * 299.99770 * 22 21 11 45 45 H 1.09004 * 109.47059 * 59.99372 * 22 21 11 46 46 H 1.08995 * 109.46057 * 58.27806 * 25 7 6 47 47 H 1.09002 * 109.45757 * 178.23860 * 25 7 6 48 48 H 1.09000 * 109.50185 * 299.23950 * 26 25 7 49 49 H 1.09002 * 109.50066 * 179.12103 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9400 0.0006 5 6 4.0888 3.4261 -0.1251 6 6 5.6084 3.5975 -0.0643 7 7 6.1118 3.0651 1.2084 8 6 7.5471 3.3372 1.3619 9 6 7.9745 3.0017 2.7675 10 8 7.1631 2.5781 3.5632 11 7 9.2583 3.1724 3.1404 12 6 9.6736 2.8468 4.5070 13 6 9.5214 4.0642 5.3819 14 1 9.1518 4.9881 4.9621 15 6 9.8530 3.9984 6.7187 16 7 10.3026 2.8734 7.2300 17 14 9.6635 5.5075 7.8032 18 1 8.3025 5.5227 8.3969 19 1 10.6765 5.4674 8.8885 20 1 9.8611 6.7320 6.9867 21 6 10.2384 3.6846 2.1794 22 6 10.8790 2.5138 1.4312 23 6 11.8632 3.0284 0.4652 24 7 12.6238 3.4261 -0.2820 25 6 5.8323 1.6287 1.3306 26 6 4.3195 1.3985 1.3114 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2371 -0.8899 32 1 4.1712 1.3936 -0.8394 33 1 3.6273 3.9779 0.6938 34 1 3.7175 3.8071 -1.0764 35 1 5.8577 4.6559 -0.1392 36 1 6.0681 3.0567 -0.8914 37 1 7.7400 4.3918 1.1654 38 1 8.1101 2.7271 0.6556 39 1 9.0500 2.0409 4.8940 40 1 10.7165 2.5296 4.5041 41 1 10.5362 2.8272 8.1703 42 1 9.7395 4.3417 1.4670 43 1 11.0099 4.2426 2.7098 44 1 11.3778 1.8566 2.1436 45 1 10.1073 1.9557 0.9009 46 1 6.2912 1.0972 0.4970 47 1 6.2444 1.2572 2.2689 48 1 3.8616 1.9184 2.1529 49 1 4.1129 0.3308 1.3865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932592163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:20 Heat of formation + Delta-G solvation = -12.431706 kcal Electronic energy + Delta-G solvation = -27423.801280 eV Core-core repulsion = 23704.938380 eV Total energy + Delta-G solvation = -3718.862899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.82151 -38.49159 -36.81657 -35.27285 -34.54142 -32.85477 -30.91464 -30.75819 -29.76023 -29.11852 -27.47911 -25.58873 -23.99373 -23.21548 -22.77195 -21.73569 -19.78712 -18.50888 -17.59975 -16.68932 -16.46252 -16.40277 -15.94669 -15.35973 -15.30957 -14.81586 -14.68511 -14.44046 -14.38463 -14.25274 -13.89100 -13.87645 -13.57740 -13.50497 -13.08624 -12.89687 -12.68888 -12.43941 -12.39041 -12.26296 -12.21083 -11.84257 -11.68722 -11.47160 -11.26092 -11.20213 -11.01556 -10.92971 -10.81141 -10.62668 -10.56033 -10.37566 -10.16514 -10.04676 -9.66771 -8.93353 -8.45343 -8.16398 -7.90137 -7.79367 -6.07036 -4.11211 1.42079 2.34823 2.70772 2.78640 3.31179 3.31895 3.37693 3.41008 3.52566 3.95341 4.27620 4.43870 4.46578 4.55395 4.71623 4.80914 4.83848 4.95174 5.02471 5.12455 5.14692 5.17031 5.23370 5.28488 5.29394 5.36435 5.37719 5.41902 5.48367 5.52265 5.55139 5.66439 5.76586 5.82812 5.86226 5.95294 6.07071 6.12662 6.28056 6.41612 6.88217 7.12099 7.19934 7.38438 7.46345 7.56117 7.89542 8.19628 8.29599 8.87737 9.04192 9.54336 11.01119 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.002753 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.865610 B =10167.899531 C =12051.047468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.262 6.262 3 C -0.077 4.077 4 C -0.073 4.073 5 C -0.105 4.105 6 C 0.058 3.942 7 N -0.519 5.519 8 C 0.034 3.966 9 C 0.508 3.492 10 O -0.513 6.513 11 N -0.600 5.600 12 C 0.246 3.754 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.118 3.882 22 C -0.050 4.050 23 C 0.217 3.783 24 N -0.446 5.446 25 C 0.052 3.948 26 C -0.108 4.108 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.024 0.976 47 H 0.101 0.899 48 H 0.075 0.925 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -2.811 -17.465 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.036 6.036 3 C -0.225 4.225 4 C -0.093 4.093 5 C -0.145 4.145 6 C -0.070 4.070 7 N -0.244 5.244 8 C -0.097 4.097 9 C 0.294 3.706 10 O -0.387 6.387 11 N -0.332 5.332 12 C 0.127 3.873 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.008 4.008 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.124 5.124 25 C -0.076 4.076 26 C -0.145 4.145 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.136 0.864 45 H 0.122 0.878 46 H 0.042 0.958 47 H 0.119 0.881 48 H 0.093 0.907 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.330 -3.187 -17.569 21.699 hybrid contribution -0.739 1.344 0.264 1.556 sum -13.070 -1.843 -17.305 21.764 Atomic orbital electron populations 1.23376 0.94820 1.06371 1.04731 1.86985 1.06686 1.11977 1.97995 1.23515 1.00370 0.93843 1.04774 1.21029 0.91546 0.97013 0.99676 1.21611 0.95613 0.95203 1.02062 1.22069 0.95093 1.00067 0.89811 1.61550 1.13667 1.16267 1.32880 1.22093 0.89249 1.02511 0.95854 1.20179 0.82414 0.79060 0.88941 1.90664 1.50532 1.44200 1.53351 1.48231 1.06969 1.64295 1.13750 1.19321 0.95728 0.97168 0.75037 1.21417 1.43829 0.97238 0.94041 0.92389 1.24912 0.95046 0.96208 0.97823 1.69915 1.44215 1.25391 1.13816 0.86527 0.77940 0.82966 0.80162 1.20546 1.21231 1.19950 1.21285 0.93770 0.93553 0.92219 1.19913 0.94392 1.00457 0.94410 1.29202 0.93878 0.93364 0.93675 1.81292 1.10766 1.09117 1.11178 1.22273 0.96223 0.86859 1.02209 1.21646 0.95056 1.01210 0.96638 0.90517 0.90773 0.88237 0.89866 0.90332 0.90749 0.90620 0.91581 0.90592 0.95061 0.88392 0.92704 0.93594 0.94827 0.92707 0.90806 0.88750 0.86446 0.87771 0.95828 0.88096 0.90655 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.76 101.05 1.09 0.27 16 2 S -0.26 -2.50 21.26 -107.50 -2.29 -4.78 16 3 C -0.08 -0.65 5.39 37.16 0.20 -0.45 16 4 C -0.07 -0.69 2.25 -90.50 -0.20 -0.89 16 5 C -0.11 -0.94 5.38 -26.65 -0.14 -1.08 16 6 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 7 N -0.52 -6.89 4.40 -236.12 -1.04 -7.93 16 8 C 0.03 0.44 4.00 -4.98 -0.02 0.42 16 9 C 0.51 9.18 7.35 -10.99 -0.08 9.09 16 10 O -0.51 -11.62 13.91 5.55 0.08 -11.54 16 11 N -0.60 -10.75 2.46 -175.06 -0.43 -11.18 16 12 C 0.25 5.77 5.16 -5.20 -0.03 5.74 16 13 C -0.53 -14.00 9.39 -34.44 -0.32 -14.33 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 17 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.12 1.54 5.17 -4.04 -0.02 1.52 16 22 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 23 C 0.22 2.58 15.44 -20.70 -0.32 2.26 16 24 N -0.45 -6.50 18.55 42.23 0.78 -5.71 16 25 C 0.05 0.69 5.11 -3.84 -0.02 0.67 16 26 C -0.11 -1.27 5.17 -26.65 -0.14 -1.41 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.70 8.01 -51.93 -0.42 0.28 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 1.14 7.25 -51.93 -0.38 0.76 16 38 H 0.06 0.58 7.16 -51.93 -0.37 0.21 16 39 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 43 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 44 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.10 0.87 7.22 -51.93 -0.37 0.50 16 46 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.10 1.66 5.78 -51.93 -0.30 1.36 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.07 0.88 7.25 -51.93 -0.38 0.51 16 LS Contribution 408.71 15.07 6.16 6.16 Total: -1.00 -32.58 408.71 -9.71 -42.29 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.39 Total: -2.08 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.30 Total: 3.29 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.05 Total: -49.61 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.29 Total: -4.78 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.58 -9.71 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932592163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.859 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds