Wall clock time and date at job start Tue Mar 31 2020 23:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81394 * 103.00178 * 2 1 4 4 C 1.53008 * 109.47586 * 179.97438 * 3 2 1 5 5 C 1.53115 * 109.52463 * 175.00202 * 4 3 2 6 6 C 1.53037 * 109.27490 * 177.62758 * 5 4 3 7 7 N 1.46854 * 109.52114 * 300.81698 * 6 5 4 8 8 C 1.46897 * 110.99875 * 185.84294 * 7 6 5 9 9 C 1.50700 * 109.47159 * 170.00153 * 8 7 6 10 10 O 1.21283 * 119.99722 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00216 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00157 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47390 * 270.00017 * 12 11 9 14 14 H 1.08001 * 120.00425 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99997 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99547 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47146 * 90.00221 * 17 15 13 19 19 H 1.48505 * 109.46836 * 209.99793 * 17 15 13 20 20 H 1.48493 * 109.47533 * 329.99811 * 17 15 13 21 21 C 1.46506 * 120.00084 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47035 * 270.00167 * 21 11 9 23 23 C 1.47196 * 109.47012 * 179.97438 * 22 21 11 24 24 N 9.00930 * 162.01056 * 5.83996 * 4 1 2 25 25 C 1.46848 * 111.19539 * 61.74495 * 7 6 5 26 26 C 1.53033 * 109.52323 * 298.25713 * 25 7 6 27 27 H 1.08991 * 109.47086 * 300.00116 * 1 2 3 28 28 H 1.09005 * 109.47086 * 60.00013 * 1 2 3 29 29 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47055 * 59.99862 * 3 2 1 31 31 H 1.08998 * 109.47632 * 299.99876 * 3 2 1 32 32 H 1.08998 * 109.51588 * 54.87361 * 4 3 2 33 33 H 1.08999 * 109.50396 * 57.68423 * 5 4 3 34 34 H 1.08999 * 109.50215 * 297.55902 * 5 4 3 35 35 H 1.08995 * 109.46021 * 180.80570 * 6 5 4 36 36 H 1.08994 * 109.46030 * 60.83039 * 6 5 4 37 37 H 1.09000 * 109.47093 * 49.99861 * 8 7 6 38 38 H 1.08998 * 109.47193 * 289.99910 * 8 7 6 39 39 H 1.09001 * 109.47057 * 30.00532 * 12 11 9 40 40 H 1.08999 * 109.47333 * 150.00092 * 12 11 9 41 41 H 0.96998 * 119.99696 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.47073 * 29.99849 * 21 11 9 43 43 H 1.09000 * 109.47212 * 149.99932 * 21 11 9 44 44 H 1.09004 * 109.46930 * 299.99770 * 22 21 11 45 45 H 1.09004 * 109.47059 * 59.99372 * 22 21 11 46 46 H 1.08995 * 109.46057 * 58.27806 * 25 7 6 47 47 H 1.09002 * 109.45757 * 178.23860 * 25 7 6 48 48 H 1.09000 * 109.50185 * 299.23950 * 26 25 7 49 49 H 1.09002 * 109.50066 * 179.12103 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9400 0.0006 5 6 4.0888 3.4261 -0.1251 6 6 5.6084 3.5975 -0.0643 7 7 6.1118 3.0651 1.2084 8 6 7.5471 3.3372 1.3619 9 6 7.9745 3.0017 2.7675 10 8 7.1631 2.5781 3.5632 11 7 9.2583 3.1724 3.1404 12 6 9.6736 2.8468 4.5070 13 6 9.5214 4.0642 5.3819 14 1 9.1518 4.9881 4.9621 15 6 9.8530 3.9984 6.7187 16 7 10.3026 2.8734 7.2300 17 14 9.6635 5.5075 7.8032 18 1 8.3025 5.5227 8.3969 19 1 10.6765 5.4674 8.8885 20 1 9.8611 6.7320 6.9867 21 6 10.2384 3.6846 2.1794 22 6 10.8790 2.5138 1.4312 23 6 11.8632 3.0284 0.4652 24 7 12.6238 3.4261 -0.2820 25 6 5.8323 1.6287 1.3306 26 6 4.3195 1.3985 1.3114 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2371 -0.8899 32 1 4.1712 1.3936 -0.8394 33 1 3.6273 3.9779 0.6938 34 1 3.7175 3.8071 -1.0764 35 1 5.8577 4.6559 -0.1392 36 1 6.0681 3.0567 -0.8914 37 1 7.7400 4.3918 1.1654 38 1 8.1101 2.7271 0.6556 39 1 9.0500 2.0409 4.8940 40 1 10.7165 2.5296 4.5041 41 1 10.5362 2.8272 8.1703 42 1 9.7395 4.3417 1.4670 43 1 11.0099 4.2426 2.7098 44 1 11.3778 1.8566 2.1436 45 1 10.1073 1.9557 0.9009 46 1 6.2912 1.0972 0.4970 47 1 6.2444 1.2572 2.2689 48 1 3.8616 1.9184 2.1529 49 1 4.1129 0.3308 1.3865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932592163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:19 Heat of formation + Delta-G solvation = -31.984003 kcal Electronic energy + Delta-G solvation = -27424.649131 eV Core-core repulsion = 23704.938380 eV Total energy + Delta-G solvation = -3719.710751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03471 -39.56851 -37.91906 -36.63192 -35.52899 -34.78750 -32.14301 -31.69156 -30.73775 -29.79538 -28.95677 -26.80949 -25.27740 -24.31927 -24.06721 -22.74068 -20.61958 -19.87772 -18.77165 -18.31118 -17.90083 -17.23207 -17.10065 -16.63187 -16.38124 -16.11849 -15.65451 -15.54164 -15.40324 -15.20344 -15.01978 -14.73050 -14.44878 -14.28687 -14.24168 -14.06560 -13.83173 -13.55239 -13.49237 -13.40632 -13.22132 -12.99797 -12.93365 -12.76745 -12.63481 -12.51024 -12.43975 -12.13761 -12.06063 -11.88194 -11.71302 -11.63642 -11.34655 -11.25492 -10.76433 -10.57025 -10.35095 -9.42055 -9.09102 -8.62701 -8.15679 -6.27476 0.79222 1.40527 1.43196 1.51615 1.69729 1.73315 1.83388 1.97522 2.27602 2.45691 2.99650 3.15485 3.21631 3.70520 3.78978 3.84383 3.97871 4.07358 4.13838 4.29599 4.33927 4.35048 4.36908 4.38203 4.46933 4.53370 4.57336 4.61274 4.65386 4.73501 4.85660 4.88041 4.89509 4.97062 5.06005 5.07046 5.12280 5.14247 5.26533 5.31516 5.37424 5.51589 5.65455 5.91908 6.11077 6.16657 6.30201 6.61102 6.80847 6.88232 7.38472 7.63234 8.90894 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.002753 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.865610 B =10167.899531 C =12051.047468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.320 6.320 3 C -0.064 4.064 4 C -0.065 4.065 5 C -0.102 4.102 6 C 0.057 3.943 7 N -0.543 5.543 8 C 0.045 3.955 9 C 0.501 3.499 10 O -0.570 6.570 11 N -0.601 5.601 12 C 0.262 3.738 13 C -0.536 4.536 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.956 3.044 18 H -0.284 1.284 19 H -0.279 1.279 20 H -0.263 1.263 21 C 0.115 3.885 22 C -0.037 4.037 23 C 0.246 3.754 24 N -0.489 5.489 25 C 0.057 3.943 26 C -0.101 4.101 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.002 0.998 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.133 0.867 46 H 0.038 0.962 47 H 0.060 0.940 48 H 0.050 0.950 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.233 -1.307 -20.172 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.094 6.094 3 C -0.212 4.212 4 C -0.084 4.084 5 C -0.141 4.141 6 C -0.070 4.070 7 N -0.269 5.269 8 C -0.086 4.086 9 C 0.289 3.711 10 O -0.448 6.448 11 N -0.333 5.333 12 C 0.141 3.859 13 C -0.575 4.575 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.210 1.210 19 H -0.205 1.205 20 H -0.187 1.187 21 C -0.010 4.010 22 C -0.078 4.078 23 C -0.071 4.071 24 N -0.167 5.167 25 C -0.070 4.070 26 C -0.139 4.139 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.020 0.980 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.137 0.863 45 H 0.151 0.849 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.055 -1.659 -20.329 24.217 hybrid contribution -0.558 0.831 1.126 1.507 sum -13.613 -0.828 -19.203 23.553 Atomic orbital electron populations 1.23403 0.91725 1.07208 1.05657 1.87180 1.10253 1.13843 1.98131 1.23447 0.99617 0.92585 1.05524 1.20944 0.92130 0.97469 0.97884 1.21614 0.95095 0.94353 1.03046 1.22188 0.95555 1.00828 0.88460 1.61484 1.13947 1.16017 1.35421 1.22063 0.89791 1.04375 0.92326 1.21183 0.81547 0.77572 0.90763 1.90648 1.52066 1.46571 1.55535 1.48106 1.08282 1.64350 1.12533 1.18749 0.94553 0.94747 0.77898 1.21755 1.43009 0.97905 0.94786 0.92889 1.25724 0.94979 0.98873 0.99340 1.70023 1.45358 1.27221 1.14138 0.85581 0.77562 0.80067 0.78602 1.21024 1.20458 1.18721 1.21502 0.92874 0.94841 0.91801 1.19827 0.94593 0.99350 0.94056 1.29214 0.93029 0.92113 0.92762 1.81338 1.12129 1.10407 1.12838 1.22094 0.96853 0.87478 1.00620 1.21534 0.94330 1.00593 0.97466 0.90084 0.89299 0.87488 0.90253 0.88293 0.90354 0.91865 0.88765 0.89223 0.93415 0.86031 0.89236 0.98023 0.94945 0.92655 0.87516 0.89896 0.86317 0.84880 0.94350 0.92128 0.93078 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.76 113.37 1.22 -0.07 16 2 S -0.32 -5.86 21.26 -56.49 -1.20 -7.06 16 3 C -0.06 -0.97 5.39 71.98 0.39 -0.58 16 4 C -0.06 -1.11 2.25 -10.71 -0.02 -1.14 16 5 C -0.10 -1.53 5.38 30.65 0.16 -1.36 16 6 C 0.06 0.95 5.46 86.32 0.47 1.42 16 7 N -0.54 -13.53 4.40 -900.95 -3.96 -17.49 16 8 C 0.05 1.06 4.00 85.56 0.34 1.40 16 9 C 0.50 18.01 7.35 87.66 0.64 18.66 16 10 O -0.57 -27.03 13.91 -3.04 -0.04 -27.07 16 11 N -0.60 -21.38 2.46 -826.15 -2.03 -23.41 16 12 C 0.26 12.68 5.16 85.63 0.44 13.12 16 13 C -0.54 -29.08 9.39 25.60 0.24 -28.84 16 14 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 15 C 0.01 0.54 5.46 84.66 0.46 1.00 16 16 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 17 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 C 0.11 2.73 5.17 86.38 0.45 3.18 16 22 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 23 C 0.25 5.24 15.44 89.42 1.38 6.62 16 24 N -0.49 -13.33 18.55 20.03 0.37 -12.96 16 25 C 0.06 1.52 5.11 86.32 0.44 1.96 16 26 C -0.10 -2.43 5.17 30.64 0.16 -2.27 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.27 8.01 -2.39 -0.02 1.25 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.12 2.31 7.25 -2.39 -0.02 2.30 16 38 H 0.09 1.50 7.16 -2.39 -0.02 1.49 16 39 H 0.00 0.09 7.42 -2.39 -0.02 0.08 16 40 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.11 1.88 6.44 -2.38 -0.02 1.86 16 43 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 44 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.13 1.70 7.22 -2.39 -0.02 1.68 16 46 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 2.11 5.78 -2.39 -0.01 2.10 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.65 7.25 -2.39 -0.02 1.64 16 Total: -1.00 -75.36 408.71 3.32 -72.04 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.92 Total: 11.29 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.95 Total: 12.60 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -5.33 Total: -107.88 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.04 Total: -27.07 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.20 Total: -7.06 kcal Total: -75.36 3.32 -72.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932592163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.055 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds