Wall clock time and date at job start Tue Mar 31 2020 23:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47010 * 119.99509 * 2 1 3 5 5 H 1.09004 * 109.47210 * 305.41699 * 4 2 1 6 6 F 1.39895 * 109.47324 * 185.41050 * 4 2 1 7 7 C 1.50707 * 109.46962 * 65.41033 * 4 2 1 8 8 O 1.21279 * 119.99445 * 46.24984 * 7 4 2 9 9 N 1.34774 * 120.00093 * 226.25059 * 7 4 2 10 10 C 1.47019 * 125.64758 * 359.68962 * 9 7 4 11 11 C 1.54333 * 107.26176 * 178.84981 * 10 9 7 12 12 C 1.55158 * 103.02590 * 338.14321 * 11 10 9 13 13 H 1.08999 * 111.00333 * 277.23478 * 12 11 10 14 14 N 1.46502 * 111.03825 * 153.39120 * 12 11 10 15 15 C 1.35303 * 125.87064 * 332.50615 * 14 12 11 16 16 C 1.35347 * 106.17889 * 179.90218 * 15 14 12 17 17 C 1.50704 * 126.75549 * 180.12229 * 16 15 14 18 18 N 1.46503 * 109.46852 * 95.25201 * 17 16 15 19 19 C 1.36931 * 119.99843 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00015 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99918 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00255 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99707 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47350 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47185 * 119.99947 * 23 21 19 26 26 H 1.48503 * 109.46960 * 239.99770 * 23 21 19 27 27 N 1.33777 * 106.49362 * 0.34971 * 16 15 14 28 28 N 1.28635 * 108.88547 * 359.77577 * 27 16 15 29 29 C 1.47420 * 125.64577 * 180.02562 * 9 7 4 30 30 H 1.09001 * 109.46734 * 60.00568 * 1 2 3 31 31 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47256 * 299.99706 * 1 2 3 33 33 H 1.08994 * 109.47297 * 239.99738 * 2 1 3 34 34 H 1.09002 * 109.47069 * 185.16184 * 3 2 1 35 35 H 1.09001 * 109.47123 * 305.16394 * 3 2 1 36 36 H 1.09006 * 109.47121 * 65.16624 * 3 2 1 37 37 H 1.08995 * 109.88203 * 298.39646 * 10 9 7 38 38 H 1.08998 * 109.88254 * 59.56857 * 10 9 7 39 39 H 1.09003 * 110.85095 * 219.67286 * 11 10 9 40 40 H 1.09006 * 110.51455 * 96.45584 * 11 10 9 41 41 H 1.08008 * 126.91110 * 0.02562 * 15 14 12 42 42 H 1.09003 * 109.46770 * 215.24309 * 17 16 15 43 43 H 1.08994 * 109.47166 * 335.24434 * 17 16 15 44 44 H 0.96996 * 120.00118 * 359.97438 * 18 17 16 45 45 H 0.96993 * 120.00289 * 180.02562 * 22 21 19 46 46 H 1.09001 * 110.36909 * 322.92961 * 29 9 7 47 47 H 1.09000 * 110.36764 * 85.25206 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5996 -0.2663 2.1367 6 9 3.4335 -0.6145 1.3133 7 6 1.6500 -2.1754 1.1843 8 8 1.8204 -2.8036 0.1609 9 7 1.1120 -2.7778 2.2632 10 6 0.8575 -2.1395 3.5629 11 6 0.2102 -3.2021 4.4760 12 6 -0.3751 -4.2227 3.4645 13 1 -1.3468 -3.8941 3.0959 14 7 -0.4662 -5.5588 4.0586 15 6 0.3213 -6.0424 5.0468 16 6 -0.1075 -7.3033 5.2878 17 6 0.4478 -8.2656 6.3060 18 7 -0.3424 -8.1840 7.5369 19 6 -0.0217 -8.9720 8.6099 20 1 0.8135 -9.6539 8.5486 21 6 -0.7702 -8.8942 9.7764 22 7 -1.7877 -8.0628 9.8513 23 14 -0.3331 -9.9697 11.2399 24 1 0.8431 -10.8111 10.9022 25 1 -0.0088 -9.1102 12.4066 26 1 -1.4865 -10.8434 11.5741 27 7 -1.1181 -7.5292 4.4409 28 7 -1.3058 -6.4761 3.7264 29 6 0.6876 -4.1876 2.3377 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 3.1261 1.4440 -0.0925 35 1 1.6031 1.9823 -0.8401 36 1 1.7541 1.9290 0.9327 37 1 1.7963 -1.7965 3.9976 38 1 0.1762 -1.2982 3.4357 39 1 -0.5819 -2.7623 5.0821 40 1 0.9636 -3.6734 5.1073 41 1 1.1284 -5.5255 5.5448 42 1 0.4005 -9.2803 5.9106 43 1 1.4846 -8.0078 6.5219 44 1 -1.0923 -7.5712 7.5921 45 1 -2.3104 -8.0082 10.6665 46 1 0.2475 -4.5018 1.3913 47 1 1.5336 -4.8254 2.5938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098700217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:26 Heat of formation + Delta-G solvation = 32.957557 kcal Electronic energy + Delta-G solvation = -29182.900945 eV Core-core repulsion = 24932.085846 eV Total energy + Delta-G solvation = -4250.815098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.42499 -43.11876 -40.66518 -38.35413 -36.05081 -35.13722 -34.16008 -32.02938 -31.13337 -30.12935 -29.75469 -28.06592 -27.57018 -25.90953 -24.60173 -23.30480 -22.77602 -21.47611 -20.95127 -20.68452 -19.97977 -18.52229 -17.82062 -17.15750 -16.99933 -16.57873 -16.17572 -16.01875 -15.55933 -14.99906 -14.85614 -14.55115 -14.46533 -14.32161 -13.94911 -13.68485 -13.45554 -13.40421 -13.26366 -13.10397 -12.89050 -12.75919 -12.72162 -12.56149 -12.22374 -12.05799 -11.72736 -11.66784 -11.57180 -11.28715 -11.20147 -10.91991 -10.83940 -10.50804 -10.37473 -10.07763 -9.94961 -9.75771 -9.40444 -8.92981 -8.88626 -6.93631 -5.75856 -3.05454 1.67166 1.80959 1.85715 2.46362 2.84792 3.41133 3.44332 3.50239 3.52433 3.68538 3.73116 3.87157 3.98387 4.14641 4.19419 4.28439 4.45707 4.52076 4.61068 4.69967 4.82407 4.87017 4.90034 4.98308 5.06266 5.12436 5.15449 5.22812 5.24073 5.26084 5.28230 5.41094 5.46624 5.48902 5.60248 5.66595 5.68063 5.77321 6.14879 6.34969 6.61713 6.65502 6.67474 6.74965 7.35854 7.70425 8.41363 8.76268 9.53420 10.08635 10.44653 11.46950 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.001930 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.149619 B =14501.124411 C =14826.736191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.090 3.910 5 H 0.102 0.898 6 F -0.186 7.186 7 C 0.514 3.486 8 O -0.511 6.511 9 N -0.613 5.613 10 C 0.097 3.903 11 C -0.142 4.142 12 C 0.137 3.863 13 H 0.130 0.870 14 N -0.294 5.294 15 C -0.044 4.044 16 C -0.001 4.001 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.291 1.291 27 N -0.249 5.249 28 N -0.091 5.091 29 C 0.100 3.900 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.188 0.812 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.097 0.903 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.962 23.395 -18.469 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.205 4.205 4 C 0.051 3.949 5 H 0.119 0.881 6 F -0.167 7.167 7 C 0.300 3.700 8 O -0.385 6.385 9 N -0.349 5.349 10 C -0.026 4.026 11 C -0.180 4.180 12 C 0.033 3.967 13 H 0.148 0.852 14 N -0.088 5.088 15 C -0.194 4.194 16 C -0.138 4.138 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 N -0.117 5.117 28 N -0.070 5.070 29 C -0.024 4.024 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.115 0.885 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.036 22.593 -19.931 30.727 hybrid contribution 0.855 0.052 1.695 1.900 sum 6.891 22.646 -18.236 29.881 Atomic orbital electron populations 1.21826 0.93352 1.02551 1.02988 1.21645 0.97361 0.97331 0.97110 1.21820 1.01990 0.94084 1.02600 1.21699 0.77909 0.92832 1.02460 0.88072 1.92895 1.29373 1.96652 1.97746 1.20680 0.77760 0.89281 0.82314 1.90774 1.52314 1.65783 1.29636 1.48389 1.62405 1.11668 1.12406 1.22221 1.01526 0.96402 0.82496 1.23139 1.02234 0.95322 0.97331 1.22570 1.01758 0.78380 0.94036 0.85217 1.46996 1.23466 1.12410 1.25910 1.23297 1.02308 0.96985 0.96770 1.22484 0.96215 0.95148 0.99979 1.18968 0.93575 0.93547 0.83651 1.42302 1.36115 1.49166 1.09461 1.19280 1.11142 1.15564 0.91019 0.90804 1.24762 0.98019 0.99882 0.98304 1.69686 1.20968 1.39832 1.27557 0.86084 0.77506 0.79678 0.82708 1.20452 1.21926 1.21850 1.75125 1.14981 1.16204 1.05387 1.78315 1.13691 0.93467 1.21499 1.22550 0.97216 0.82890 0.99745 0.91129 0.92286 0.92035 0.88592 0.91711 0.91479 0.92200 0.89624 0.89872 0.87508 0.88296 0.79460 0.94225 0.94416 0.78111 0.93567 0.88464 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.01 37.16 0.33 -0.38 16 2 C -0.12 -0.69 2.62 -90.62 -0.24 -0.92 16 3 C -0.15 -0.66 8.94 37.16 0.33 -0.33 16 4 C 0.09 0.60 3.13 -27.88 -0.09 0.52 16 5 H 0.10 0.37 6.66 -51.93 -0.35 0.02 16 6 F -0.19 -1.66 16.44 2.25 0.04 -1.63 16 7 C 0.51 4.72 6.17 -10.98 -0.07 4.65 16 8 O -0.51 -6.73 16.70 5.56 0.09 -6.64 16 9 N -0.61 -4.48 3.33 -170.51 -0.57 -5.05 16 10 C 0.10 0.39 5.94 -3.06 -0.02 0.38 16 11 C -0.14 -0.75 6.31 -24.89 -0.16 -0.91 16 12 C 0.14 1.12 4.12 -65.77 -0.27 0.85 16 13 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 14 N -0.29 -3.83 3.40 -52.67 -0.18 -4.01 16 15 C -0.04 -0.62 10.61 -17.05 -0.18 -0.80 16 16 C 0.00 -0.01 6.62 -82.77 -0.55 -0.56 16 17 C 0.23 4.78 6.82 -5.19 -0.04 4.75 16 18 N -0.73 -18.69 5.59 -61.08 -0.34 -19.03 16 19 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 20 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 23 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 N -0.25 -4.98 12.41 33.29 0.41 -4.57 16 28 N -0.09 -1.56 13.17 60.35 0.79 -0.77 16 29 C 0.10 0.86 6.60 -2.52 -0.02 0.84 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.10 0.74 7.75 -51.93 -0.40 0.34 16 34 H 0.06 0.34 7.84 -51.93 -0.41 -0.07 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.16 7.83 -51.93 -0.41 -0.25 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.55 6.25 -51.93 -0.32 0.23 16 41 H 0.19 1.99 6.82 -52.48 -0.36 1.63 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.39 10.68 7.66 -40.82 -0.31 10.37 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.10 0.94 8.04 -51.93 -0.42 0.52 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -36.50 391.15 -6.49 -42.98 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.13 Total: 2.38 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.20 Total: 0.77 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.84 Total: -61.08 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.09 Total: -6.64 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.50 -6.49 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098700217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.939 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds