Wall clock time and date at job start Tue Mar 31 2020 23:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47010 * 119.99509 * 2 1 3 5 5 H 1.09004 * 109.47210 * 305.41699 * 4 2 1 6 6 F 1.39895 * 109.47324 * 185.41050 * 4 2 1 7 7 C 1.50707 * 109.46962 * 65.41033 * 4 2 1 8 8 O 1.21279 * 119.99445 * 46.24984 * 7 4 2 9 9 N 1.34774 * 120.00093 * 226.25059 * 7 4 2 10 10 C 1.47019 * 125.64758 * 359.68962 * 9 7 4 11 11 C 1.54333 * 107.26176 * 178.84981 * 10 9 7 12 12 C 1.55158 * 103.02590 * 338.14321 * 11 10 9 13 13 H 1.08999 * 111.00333 * 277.23478 * 12 11 10 14 14 N 1.46502 * 111.03825 * 153.39120 * 12 11 10 15 15 C 1.35303 * 125.87064 * 332.50615 * 14 12 11 16 16 C 1.35347 * 106.17889 * 179.90218 * 15 14 12 17 17 C 1.50704 * 126.75549 * 180.12229 * 16 15 14 18 18 N 1.46503 * 109.46852 * 95.25201 * 17 16 15 19 19 C 1.36931 * 119.99843 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00015 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99918 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00255 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99707 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47350 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47185 * 119.99947 * 23 21 19 26 26 H 1.48503 * 109.46960 * 239.99770 * 23 21 19 27 27 N 1.33777 * 106.49362 * 0.34971 * 16 15 14 28 28 N 1.28635 * 108.88547 * 359.77577 * 27 16 15 29 29 C 1.47420 * 125.64577 * 180.02562 * 9 7 4 30 30 H 1.09001 * 109.46734 * 60.00568 * 1 2 3 31 31 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47256 * 299.99706 * 1 2 3 33 33 H 1.08994 * 109.47297 * 239.99738 * 2 1 3 34 34 H 1.09002 * 109.47069 * 185.16184 * 3 2 1 35 35 H 1.09001 * 109.47123 * 305.16394 * 3 2 1 36 36 H 1.09006 * 109.47121 * 65.16624 * 3 2 1 37 37 H 1.08995 * 109.88203 * 298.39646 * 10 9 7 38 38 H 1.08998 * 109.88254 * 59.56857 * 10 9 7 39 39 H 1.09003 * 110.85095 * 219.67286 * 11 10 9 40 40 H 1.09006 * 110.51455 * 96.45584 * 11 10 9 41 41 H 1.08008 * 126.91110 * 0.02562 * 15 14 12 42 42 H 1.09003 * 109.46770 * 215.24309 * 17 16 15 43 43 H 1.08994 * 109.47166 * 335.24434 * 17 16 15 44 44 H 0.96996 * 120.00118 * 359.97438 * 18 17 16 45 45 H 0.96993 * 120.00289 * 180.02562 * 22 21 19 46 46 H 1.09001 * 110.36909 * 322.92961 * 29 9 7 47 47 H 1.09000 * 110.36764 * 85.25206 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5996 -0.2663 2.1367 6 9 3.4335 -0.6145 1.3133 7 6 1.6500 -2.1754 1.1843 8 8 1.8204 -2.8036 0.1609 9 7 1.1120 -2.7778 2.2632 10 6 0.8575 -2.1395 3.5629 11 6 0.2102 -3.2021 4.4760 12 6 -0.3751 -4.2227 3.4645 13 1 -1.3468 -3.8941 3.0959 14 7 -0.4662 -5.5588 4.0586 15 6 0.3213 -6.0424 5.0468 16 6 -0.1075 -7.3033 5.2878 17 6 0.4478 -8.2656 6.3060 18 7 -0.3424 -8.1840 7.5369 19 6 -0.0217 -8.9720 8.6099 20 1 0.8135 -9.6539 8.5486 21 6 -0.7702 -8.8942 9.7764 22 7 -1.7877 -8.0628 9.8513 23 14 -0.3331 -9.9697 11.2399 24 1 0.8431 -10.8111 10.9022 25 1 -0.0088 -9.1102 12.4066 26 1 -1.4865 -10.8434 11.5741 27 7 -1.1181 -7.5292 4.4409 28 7 -1.3058 -6.4761 3.7264 29 6 0.6876 -4.1876 2.3377 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 3.1261 1.4440 -0.0925 35 1 1.6031 1.9823 -0.8401 36 1 1.7541 1.9290 0.9327 37 1 1.7963 -1.7965 3.9976 38 1 0.1762 -1.2982 3.4357 39 1 -0.5819 -2.7623 5.0821 40 1 0.9636 -3.6734 5.1073 41 1 1.1284 -5.5255 5.5448 42 1 0.4005 -9.2803 5.9106 43 1 1.4846 -8.0078 6.5219 44 1 -1.0923 -7.5712 7.5921 45 1 -2.3104 -8.0082 10.6665 46 1 0.2475 -4.5018 1.3913 47 1 1.5336 -4.8254 2.5938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098700217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:26 Heat of formation + Delta-G solvation = 6.967199 kcal Electronic energy + Delta-G solvation = -29184.027971 eV Core-core repulsion = 24932.085846 eV Total energy + Delta-G solvation = -4251.942125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.02699 -44.33763 -41.33625 -39.07023 -36.83350 -36.52093 -35.33443 -33.72518 -32.02225 -31.63560 -30.48864 -28.64051 -27.96235 -27.63503 -25.34215 -24.82741 -23.97031 -22.24772 -21.99048 -21.61702 -20.54911 -19.40671 -19.10417 -18.46850 -17.65141 -17.31418 -17.25240 -16.70181 -16.57617 -16.23185 -15.92940 -15.60947 -15.46939 -15.10291 -14.96584 -14.86351 -14.56384 -14.28975 -14.09611 -13.93444 -13.68269 -13.57284 -13.40577 -13.13574 -13.12301 -13.04246 -12.83664 -12.79325 -12.57499 -12.14303 -12.08850 -12.07080 -12.02864 -11.89276 -11.78799 -11.62540 -11.19025 -10.98461 -10.95142 -10.25957 -9.99962 -9.00790 -7.92469 -5.22520 0.52978 1.04061 1.12920 1.43955 1.51458 1.53118 1.62840 1.70911 2.60307 2.83551 3.11552 3.20569 3.32116 3.34996 3.42631 3.56498 3.63828 3.75193 3.80620 3.91495 4.03709 4.12858 4.20537 4.23449 4.27759 4.41995 4.45426 4.49087 4.54059 4.62978 4.73858 4.75869 4.86068 4.86333 4.89377 4.92383 4.94493 5.11304 5.13407 5.17827 5.29036 5.34678 5.52869 5.62455 6.06501 6.27590 6.70097 7.34703 7.47458 8.05524 8.31651 9.31522 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.001930 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.149619 B =14501.124411 C =14826.736191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.092 3.908 5 H 0.143 0.857 6 F -0.200 7.200 7 C 0.508 3.492 8 O -0.564 6.564 9 N -0.606 5.606 10 C 0.093 3.907 11 C -0.134 4.134 12 C 0.130 3.870 13 H 0.143 0.857 14 N -0.277 5.277 15 C -0.015 4.015 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.738 5.738 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.298 1.298 27 N -0.296 5.296 28 N -0.110 5.110 29 C 0.103 3.897 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.228 0.772 42 H 0.027 0.973 43 H 0.064 0.936 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.078 0.922 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 25.938 -17.384 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.201 4.201 4 C 0.053 3.947 5 H 0.161 0.839 6 F -0.180 7.180 7 C 0.296 3.704 8 O -0.442 6.442 9 N -0.341 5.341 10 C -0.028 4.028 11 C -0.173 4.173 12 C 0.027 3.973 13 H 0.160 0.840 14 N -0.070 5.070 15 C -0.166 4.166 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.380 5.380 19 C -0.374 4.374 20 H 0.102 0.898 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.225 1.225 27 N -0.163 5.163 28 N -0.088 5.088 29 C -0.022 4.022 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.245 0.755 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.032 25.150 -18.869 32.218 hybrid contribution 0.589 -0.682 1.230 1.525 sum 7.620 24.468 -17.639 31.111 Atomic orbital electron populations 1.21810 0.92262 1.01779 1.04474 1.21640 0.98239 0.97892 0.95757 1.21808 1.01290 0.93066 1.03966 1.21936 0.77188 0.91088 1.04494 0.83936 1.92868 1.30741 1.96557 1.97877 1.21237 0.77118 0.90229 0.81842 1.90750 1.54582 1.67119 1.31718 1.48436 1.61250 1.11080 1.13308 1.22560 1.03357 0.96596 0.80306 1.23229 1.02711 0.94454 0.96856 1.22996 1.02575 0.76650 0.95035 0.83975 1.47317 1.21732 1.13160 1.24823 1.23708 1.01878 0.95423 0.95604 1.22298 0.97534 0.96806 1.00723 1.18978 0.94142 0.93805 0.82390 1.42490 1.36268 1.48560 1.10730 1.19724 1.10823 1.15202 0.91605 0.89834 1.25616 0.98344 1.01677 1.01274 1.69847 1.22394 1.41875 1.28087 0.85013 0.77351 0.77889 0.79106 1.18702 1.21759 1.22549 1.75052 1.16453 1.18041 1.06747 1.78206 1.15044 0.93820 1.21741 1.22364 0.96862 0.83928 0.99010 0.90704 0.94092 0.89549 0.91479 0.92778 0.90734 0.90303 0.87583 0.86465 0.85656 0.88018 0.75527 0.95487 0.91822 0.79708 0.94065 0.90310 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.01 71.98 0.65 -0.46 16 2 C -0.12 -1.23 2.62 -10.79 -0.03 -1.26 16 3 C -0.14 -0.99 8.94 71.98 0.64 -0.34 16 4 C 0.09 1.03 3.13 29.85 0.09 1.12 16 5 H 0.14 0.38 6.66 -2.38 -0.02 0.36 16 6 F -0.20 -3.27 16.44 44.97 0.74 -2.53 16 7 C 0.51 8.83 6.17 87.66 0.54 9.37 16 8 O -0.56 -15.39 16.70 -3.03 -0.05 -15.44 16 9 N -0.61 -7.53 3.33 -811.76 -2.70 -10.23 16 10 C 0.09 0.33 5.94 86.73 0.52 0.85 16 11 C -0.13 -0.87 6.31 31.79 0.20 -0.67 16 12 C 0.13 1.84 4.12 46.39 0.19 2.03 16 13 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 14 N -0.28 -6.82 3.40 -320.55 -1.09 -7.91 16 15 C -0.01 -0.39 10.61 83.49 0.89 0.50 16 16 C -0.04 -1.30 6.62 41.60 0.28 -1.02 16 17 C 0.23 9.64 6.82 85.63 0.58 10.22 16 18 N -0.74 -38.14 5.59 -347.17 -1.94 -40.08 16 19 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 23 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 N -0.30 -12.06 12.41 -48.60 -0.60 -12.66 16 28 N -0.11 -3.76 13.17 37.02 0.49 -3.27 16 29 C 0.10 1.66 6.60 86.86 0.57 2.24 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 0.46 7.39 -2.38 -0.02 0.45 16 32 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.07 1.09 7.75 -2.39 -0.02 1.08 16 34 H 0.05 0.49 7.84 -2.39 -0.02 0.47 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.12 -0.27 7.83 -2.39 -0.02 -0.29 16 39 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.10 0.66 6.25 -2.38 -0.01 0.65 16 41 H 0.23 3.94 6.82 -2.91 -0.02 3.92 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.37 20.95 7.66 -92.71 -0.71 20.24 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.08 1.57 8.04 -2.39 -0.02 1.55 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.44 391.15 3.86 -79.58 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.28 Total: 18.19 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.43 Total: 6.00 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -5.56 Total: -133.72 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.05 Total: -15.44 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.74 Total: -2.53 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -83.44 3.86 -79.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098700217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.547 kcal (2) G-P(sol) polarization free energy of solvation -83.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds