Wall clock time and date at job start Tue Mar 31 2020 23:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00430 * 2 1 4 4 O 1.20826 * 119.99674 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00457 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47120 * 60.00364 * 5 3 2 7 7 C 1.53000 * 109.47143 * 300.00052 * 5 3 2 8 8 C 1.52991 * 109.47168 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.47293 * 60.00154 * 8 7 5 10 10 C 1.53005 * 109.47350 * 300.00222 * 9 8 7 11 11 C 1.52998 * 109.47051 * 59.99385 * 10 9 8 12 12 H 1.09006 * 109.47368 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47086 * 60.00477 * 11 10 9 14 14 O 1.20824 * 119.99908 * 239.99886 * 13 11 10 15 15 O 1.34232 * 119.99802 * 60.00027 * 13 11 10 16 16 C 1.45195 * 116.99757 * 180.02562 * 15 13 11 17 17 C 1.53044 * 109.46041 * 149.99833 * 16 15 13 18 18 C 1.53187 * 109.31360 * 181.38026 * 17 16 15 19 19 N 1.46930 * 108.77990 * 305.36929 * 18 17 16 20 20 C 1.36935 * 120.62910 * 233.58735 * 19 18 17 21 21 H 1.08001 * 119.99830 * 27.69543 * 20 19 18 22 22 C 1.38810 * 119.99805 * 207.69932 * 20 19 18 23 23 N 1.31619 * 120.00262 * 17.70507 * 22 20 19 24 24 Si 1.86802 * 119.99780 * 197.98365 * 22 20 19 25 25 H 1.48498 * 109.47349 * 265.09160 * 24 22 20 26 26 H 1.48502 * 109.47128 * 25.09267 * 24 22 20 27 27 H 1.48505 * 109.47065 * 145.09053 * 24 22 20 28 28 C 1.46924 * 118.73633 * 53.85403 * 19 18 17 29 29 C 1.53041 * 109.45900 * 270.06398 * 16 15 13 30 30 H 1.09000 * 109.47252 * 299.99779 * 1 2 3 31 31 H 1.09008 * 109.46922 * 59.99925 * 1 2 3 32 32 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46580 * 60.00009 * 7 5 3 34 34 H 1.08995 * 109.47051 * 300.00037 * 7 5 3 35 35 H 1.09003 * 109.47219 * 300.00389 * 8 7 5 36 36 H 1.08998 * 109.47659 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47607 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.47632 * 59.99595 * 9 8 7 39 39 H 1.09011 * 109.46558 * 300.00101 * 10 9 8 40 40 H 1.08999 * 109.47682 * 179.97438 * 10 9 8 41 41 H 1.09001 * 109.46347 * 30.02313 * 16 15 13 42 42 H 1.08997 * 109.49527 * 61.43081 * 17 16 15 43 43 H 1.08998 * 109.49477 * 301.33496 * 17 16 15 44 44 H 1.09000 * 109.58940 * 185.57597 * 18 17 16 45 45 H 1.09001 * 109.70017 * 65.22568 * 18 17 16 46 46 H 0.96996 * 120.00255 * 180.27636 * 23 22 20 47 47 H 1.08994 * 109.58677 * 65.93461 * 28 19 18 48 48 H 1.08999 * 109.58155 * 186.35773 * 28 19 18 49 49 H 1.09001 * 109.49717 * 298.57075 * 29 16 15 50 50 H 1.09000 * 109.49537 * 58.66517 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7806 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 5.6408 0.6610 1.2505 9 6 6.0752 2.1280 1.2501 10 6 5.5286 2.8215 0.0005 11 6 4.0007 2.7419 0.0002 12 1 3.6113 3.2356 -0.8903 13 6 3.4618 3.4257 1.2303 14 8 2.7985 2.8034 2.0257 15 8 3.7188 4.7260 1.4423 16 6 3.1683 5.3186 2.6482 17 6 4.0841 6.4482 3.1250 18 6 3.5186 7.0481 4.4161 19 7 2.1281 7.4586 4.1775 20 6 1.7197 8.7353 4.4575 21 1 2.4286 9.5492 4.4209 22 6 0.3946 8.9832 4.7886 23 7 -0.3837 7.9940 5.1735 24 14 -0.2860 10.7194 4.6803 25 1 -0.1995 11.3690 6.0128 26 1 0.5055 11.5009 3.6963 27 1 -1.7051 10.6686 4.2455 28 6 1.1828 6.4715 3.6382 29 6 1.7759 5.8797 2.3506 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8038 -0.4638 1.2502 34 1 3.7229 1.0758 2.1399 35 1 6.0305 0.1665 0.3607 36 1 6.0302 0.1675 2.1409 37 1 7.1636 2.1848 1.2498 38 1 5.6854 2.6227 2.1398 39 1 5.9183 2.3269 -0.8893 40 1 5.8376 3.8668 0.0004 41 1 3.0946 4.5581 3.4256 42 1 4.1383 7.2208 2.3581 43 1 5.0818 6.0522 3.3144 44 1 4.1111 7.9158 4.7061 45 1 3.5483 6.3032 5.2113 46 1 -1.3107 8.1666 5.4009 47 1 1.0256 5.6787 4.3695 48 1 0.2337 6.9587 3.4147 49 1 1.8519 6.6577 1.5910 50 1 1.1308 5.0791 1.9888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122814851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:51 Heat of formation + Delta-G solvation = -166.090344 kcal Electronic energy + Delta-G solvation = -31797.052158 eV Core-core repulsion = 27596.480498 eV Total energy + Delta-G solvation = -4200.571660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45490 -39.98702 -38.34284 -36.94838 -36.44308 -35.62459 -32.71988 -31.70680 -31.50545 -30.15658 -29.62458 -27.86330 -25.51378 -24.46811 -23.56613 -22.30924 -22.18516 -21.21746 -21.00239 -19.56251 -19.14779 -17.72594 -17.20187 -17.00026 -16.79614 -16.37144 -16.06637 -15.46396 -14.96371 -14.78350 -14.32296 -14.17513 -13.97632 -13.59866 -13.42632 -13.30255 -13.17606 -12.92224 -12.91098 -12.63610 -12.41948 -12.31659 -12.22621 -12.11977 -11.53654 -11.45993 -11.23037 -11.12163 -11.03931 -10.90173 -10.78500 -10.70422 -10.61173 -10.46843 -10.27913 -10.25635 -10.17294 -9.90103 -9.86436 -9.57223 -9.32532 -8.45459 -6.70603 -5.78513 -3.20862 2.19805 2.53186 2.60891 2.94372 3.38773 3.45980 3.48816 4.09952 4.38999 4.44446 4.50473 4.75694 4.81000 4.89591 4.94473 5.00577 5.04887 5.07625 5.11077 5.21563 5.31154 5.39873 5.42234 5.43368 5.50279 5.54920 5.59919 5.67412 5.77485 5.79982 5.85719 5.93218 5.99248 6.07020 6.15203 6.26061 6.33429 6.38871 6.55020 6.58713 6.65224 6.77214 6.92577 7.06710 7.36462 7.65758 7.71490 7.80171 8.13007 8.44424 9.20334 9.83813 10.40260 11.30280 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.003099 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.830929 B = 9032.951882 C =10234.081453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.493 6.493 5 C -0.060 4.060 6 H 0.117 0.883 7 C -0.129 4.129 8 C -0.116 4.116 9 C -0.129 4.129 10 C -0.109 4.109 11 C -0.070 4.070 12 H 0.113 0.887 13 C 0.475 3.525 14 O -0.503 6.503 15 O -0.357 6.357 16 C 0.101 3.899 17 C -0.127 4.127 18 C 0.148 3.852 19 N -0.593 5.593 20 C -0.255 4.255 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.287 1.287 26 H -0.278 1.278 27 H -0.289 1.289 28 C 0.176 3.824 29 C -0.153 4.153 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.020 0.980 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.093 0.907 49 H 0.063 0.937 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.683 -18.050 -13.029 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.378 6.378 5 C -0.079 4.079 6 H 0.135 0.865 7 C -0.166 4.166 8 C -0.154 4.154 9 C -0.166 4.166 10 C -0.147 4.147 11 C -0.090 4.090 12 H 0.131 0.869 13 C 0.318 3.682 14 O -0.391 6.391 15 O -0.274 6.274 16 C 0.047 3.953 17 C -0.166 4.166 18 C 0.021 3.979 19 N -0.315 5.315 20 C -0.385 4.385 21 H 0.085 0.915 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.214 1.214 26 H -0.204 1.204 27 H -0.215 1.215 28 C 0.050 3.950 29 C -0.192 4.192 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.111 0.889 49 H 0.081 0.919 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.051 -17.867 -12.692 24.545 hybrid contribution -0.917 0.849 -0.014 1.249 sum 10.135 -17.018 -12.707 23.533 Atomic orbital electron populations 1.23247 0.76324 1.03393 1.02790 1.86441 1.23414 1.33450 1.84470 1.23457 0.91681 0.81511 0.72388 1.90713 1.66913 1.36178 1.44035 1.20909 0.87897 0.96308 1.02829 0.86469 1.21852 0.95909 1.01202 0.97615 1.21544 0.94896 0.96535 1.02389 1.21655 1.01061 0.95819 0.98109 1.21558 0.90956 1.02827 0.99320 1.20962 0.97972 0.93331 0.96689 0.86888 1.22995 0.77119 0.81255 0.86829 1.90559 1.36404 1.65488 1.46625 1.86489 1.70428 1.24624 1.45813 1.22862 0.94583 0.94328 0.83497 1.22217 0.97206 0.96652 1.00549 1.20876 0.87622 0.97217 0.92143 1.44153 1.04678 1.09783 1.72927 1.19190 0.94306 0.83865 1.41090 0.91494 1.25053 0.98230 0.97338 0.98997 1.70040 1.06790 1.30672 1.47081 0.86283 0.78324 0.84362 0.77826 1.21441 1.20357 1.21532 1.20846 0.94298 0.90921 0.88949 1.22706 0.94285 0.99950 1.02260 0.91631 0.92060 0.88278 0.90526 0.88439 0.91604 0.91217 0.90956 0.91760 0.90190 0.89642 0.90617 0.91194 0.92411 0.91888 0.96222 0.93570 0.96083 0.88896 0.91872 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.31 10.47 -39.26 -0.41 -4.72 16 3 C 0.47 6.33 6.28 36.01 0.23 6.55 16 4 O -0.49 -8.49 13.91 -25.90 -0.36 -8.85 16 5 C -0.06 -0.62 2.38 -91.77 -0.22 -0.84 16 6 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.13 -1.29 4.87 -26.74 -0.13 -1.42 16 8 C -0.12 -0.89 5.92 -26.74 -0.16 -1.05 16 9 C -0.13 -1.10 5.70 -26.73 -0.15 -1.26 16 10 C -0.11 -0.91 5.39 -26.73 -0.14 -1.06 16 11 C -0.07 -0.80 2.30 -91.77 -0.21 -1.01 16 12 H 0.11 1.23 8.10 -51.93 -0.42 0.81 16 13 C 0.48 7.62 4.71 36.01 0.17 7.79 16 14 O -0.50 -9.35 11.08 -25.90 -0.29 -9.63 16 15 O -0.36 -6.21 9.78 -39.26 -0.38 -6.60 16 16 C 0.10 1.97 2.41 -26.69 -0.06 1.91 16 17 C -0.13 -2.33 5.74 -26.61 -0.15 -2.49 16 18 C 0.15 3.18 6.51 -3.71 -0.02 3.15 16 19 N -0.59 -15.35 2.99 -172.06 -0.51 -15.86 16 20 C -0.26 -7.12 9.58 -15.06 -0.14 -7.27 16 21 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16 22 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 23 N -0.90 -26.78 11.19 55.49 0.62 -26.16 16 24 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.18 4.48 5.34 -3.49 -0.02 4.46 16 29 C -0.15 -3.35 5.73 -26.39 -0.15 -3.50 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.06 0.58 8.13 -51.92 -0.42 0.16 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.69 8.11 -51.93 -0.42 0.26 16 34 H 0.10 1.30 5.52 -51.93 -0.29 1.01 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 39 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.08 1.57 7.16 -51.93 -0.37 1.19 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 2.62 6.03 -51.93 -0.31 2.31 16 49 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -33.89 387.02 -9.21 -43.10 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.49 Total: 0.54 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.19 Total: 5.39 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.11 Total: -42.02 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.44 Total: -29.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.89 -9.21 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122814851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.987 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds