Wall clock time and date at job start Tue Mar 31 2020 23:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00430 * 2 1 4 4 O 1.20826 * 119.99674 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00457 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47120 * 60.00364 * 5 3 2 7 7 C 1.53000 * 109.47143 * 300.00052 * 5 3 2 8 8 C 1.52991 * 109.47168 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.47293 * 60.00154 * 8 7 5 10 10 C 1.53005 * 109.47350 * 300.00222 * 9 8 7 11 11 C 1.52998 * 109.47051 * 59.99385 * 10 9 8 12 12 H 1.09006 * 109.47368 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47086 * 60.00477 * 11 10 9 14 14 O 1.20824 * 119.99908 * 239.99886 * 13 11 10 15 15 O 1.34232 * 119.99802 * 60.00027 * 13 11 10 16 16 C 1.45195 * 116.99757 * 180.02562 * 15 13 11 17 17 C 1.53044 * 109.46041 * 149.99833 * 16 15 13 18 18 C 1.53187 * 109.31360 * 181.38026 * 17 16 15 19 19 N 1.46930 * 108.77990 * 305.36929 * 18 17 16 20 20 C 1.36935 * 120.62910 * 233.58735 * 19 18 17 21 21 H 1.08001 * 119.99830 * 27.69543 * 20 19 18 22 22 C 1.38810 * 119.99805 * 207.69932 * 20 19 18 23 23 N 1.31619 * 120.00262 * 17.70507 * 22 20 19 24 24 Si 1.86802 * 119.99780 * 197.98365 * 22 20 19 25 25 H 1.48498 * 109.47349 * 265.09160 * 24 22 20 26 26 H 1.48502 * 109.47128 * 25.09267 * 24 22 20 27 27 H 1.48505 * 109.47065 * 145.09053 * 24 22 20 28 28 C 1.46924 * 118.73633 * 53.85403 * 19 18 17 29 29 C 1.53041 * 109.45900 * 270.06398 * 16 15 13 30 30 H 1.09000 * 109.47252 * 299.99779 * 1 2 3 31 31 H 1.09008 * 109.46922 * 59.99925 * 1 2 3 32 32 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46580 * 60.00009 * 7 5 3 34 34 H 1.08995 * 109.47051 * 300.00037 * 7 5 3 35 35 H 1.09003 * 109.47219 * 300.00389 * 8 7 5 36 36 H 1.08998 * 109.47659 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47607 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.47632 * 59.99595 * 9 8 7 39 39 H 1.09011 * 109.46558 * 300.00101 * 10 9 8 40 40 H 1.08999 * 109.47682 * 179.97438 * 10 9 8 41 41 H 1.09001 * 109.46347 * 30.02313 * 16 15 13 42 42 H 1.08997 * 109.49527 * 61.43081 * 17 16 15 43 43 H 1.08998 * 109.49477 * 301.33496 * 17 16 15 44 44 H 1.09000 * 109.58940 * 185.57597 * 18 17 16 45 45 H 1.09001 * 109.70017 * 65.22568 * 18 17 16 46 46 H 0.96996 * 120.00255 * 180.27636 * 23 22 20 47 47 H 1.08994 * 109.58677 * 65.93461 * 28 19 18 48 48 H 1.08999 * 109.58155 * 186.35773 * 28 19 18 49 49 H 1.09001 * 109.49717 * 298.57075 * 29 16 15 50 50 H 1.09000 * 109.49537 * 58.66517 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7806 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 5.6408 0.6610 1.2505 9 6 6.0752 2.1280 1.2501 10 6 5.5286 2.8215 0.0005 11 6 4.0007 2.7419 0.0002 12 1 3.6113 3.2356 -0.8903 13 6 3.4618 3.4257 1.2303 14 8 2.7985 2.8034 2.0257 15 8 3.7188 4.7260 1.4423 16 6 3.1683 5.3186 2.6482 17 6 4.0841 6.4482 3.1250 18 6 3.5186 7.0481 4.4161 19 7 2.1281 7.4586 4.1775 20 6 1.7197 8.7353 4.4575 21 1 2.4286 9.5492 4.4209 22 6 0.3946 8.9832 4.7886 23 7 -0.3837 7.9940 5.1735 24 14 -0.2860 10.7194 4.6803 25 1 -0.1995 11.3690 6.0128 26 1 0.5055 11.5009 3.6963 27 1 -1.7051 10.6686 4.2455 28 6 1.1828 6.4715 3.6382 29 6 1.7759 5.8797 2.3506 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8038 -0.4638 1.2502 34 1 3.7229 1.0758 2.1399 35 1 6.0305 0.1665 0.3607 36 1 6.0302 0.1675 2.1409 37 1 7.1636 2.1848 1.2498 38 1 5.6854 2.6227 2.1398 39 1 5.9183 2.3269 -0.8893 40 1 5.8376 3.8668 0.0004 41 1 3.0946 4.5581 3.4256 42 1 4.1383 7.2208 2.3581 43 1 5.0818 6.0522 3.3144 44 1 4.1111 7.9158 4.7061 45 1 3.5483 6.3032 5.2113 46 1 -1.3107 8.1666 5.4009 47 1 1.0256 5.6787 4.3695 48 1 0.2337 6.9587 3.4147 49 1 1.8519 6.6577 1.5910 50 1 1.1308 5.0791 1.9888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122814851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:50 Heat of formation + Delta-G solvation = -184.820747 kcal Electronic energy + Delta-G solvation = -31797.864369 eV Core-core repulsion = 27596.480498 eV Total energy + Delta-G solvation = -4201.383871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.53118 -41.18659 -39.59307 -38.39011 -37.49554 -37.09679 -34.64325 -32.51829 -32.47205 -31.91463 -31.47493 -28.70527 -27.29669 -25.69003 -24.46797 -24.01732 -23.74629 -22.39854 -21.88270 -21.10959 -20.51529 -18.91941 -18.68293 -18.39754 -17.94919 -17.40174 -17.28691 -16.90581 -16.60158 -15.84666 -15.70381 -15.46777 -15.14910 -14.98735 -14.95142 -14.65511 -14.46013 -14.27814 -14.21413 -13.77259 -13.57146 -13.32189 -13.24299 -13.16017 -13.09129 -12.96058 -12.80798 -12.62099 -12.38488 -12.22442 -12.13151 -11.98613 -11.91786 -11.85013 -11.80568 -11.73246 -11.51604 -11.19894 -11.14706 -11.12198 -10.85854 -10.58745 -8.81647 -7.93546 -5.39821 1.16993 1.32521 1.44559 1.46833 1.57367 1.68088 1.72285 2.47890 3.22704 3.26066 3.47222 3.57692 3.62049 3.75526 3.84829 3.95864 4.00853 4.11880 4.12837 4.17729 4.25990 4.26907 4.33090 4.35672 4.38603 4.47997 4.50534 4.64202 4.65876 4.71502 4.83573 4.85265 4.91929 4.92497 5.01884 5.05834 5.16694 5.18436 5.19356 5.26320 5.32612 5.36324 5.39595 5.44838 5.53000 5.60564 5.72113 6.31589 6.70011 6.83332 7.05587 7.75570 8.29125 9.14330 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.003099 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.830929 B = 9032.951882 C =10234.081453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.462 3.538 4 O -0.541 6.541 5 C -0.058 4.058 6 H 0.166 0.834 7 C -0.126 4.126 8 C -0.109 4.109 9 C -0.131 4.131 10 C -0.103 4.103 11 C -0.067 4.067 12 H 0.120 0.880 13 C 0.466 3.534 14 O -0.533 6.533 15 O -0.354 6.354 16 C 0.110 3.890 17 C -0.111 4.111 18 C 0.143 3.857 19 N -0.610 5.610 20 C -0.266 4.266 21 H 0.077 0.923 22 C -0.053 4.053 23 N -0.939 5.939 24 Si 0.972 3.028 25 H -0.282 1.282 26 H -0.266 1.266 27 H -0.294 1.294 28 C 0.187 3.813 29 C -0.137 4.137 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.028 0.972 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.250 0.750 47 H -0.007 1.007 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.729 -18.906 -15.321 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.076 4.076 6 H 0.183 0.817 7 C -0.164 4.164 8 C -0.147 4.147 9 C -0.168 4.168 10 C -0.140 4.140 11 C -0.086 4.086 12 H 0.138 0.862 13 C 0.310 3.690 14 O -0.423 6.423 15 O -0.271 6.271 16 C 0.055 3.945 17 C -0.150 4.150 18 C 0.018 3.982 19 N -0.334 5.334 20 C -0.396 4.396 21 H 0.094 0.906 22 C -0.248 4.248 23 N -0.585 5.585 24 Si 0.799 3.201 25 H -0.209 1.209 26 H -0.190 1.190 27 H -0.221 1.221 28 C 0.061 3.939 29 C -0.176 4.176 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.059 0.941 47 H 0.011 0.989 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.146 -18.747 -14.995 27.864 hybrid contribution -1.892 0.994 0.731 2.258 sum 12.254 -17.753 -14.264 25.861 Atomic orbital electron populations 1.23457 0.75485 1.05534 1.01786 1.86444 1.24336 1.32766 1.83943 1.24276 0.93143 0.81128 0.70845 1.90696 1.68204 1.37679 1.46414 1.21154 0.85521 0.96021 1.04911 0.81650 1.21797 0.97815 1.01117 0.95633 1.21545 0.92664 0.96255 1.04189 1.21691 1.02324 0.96078 0.96741 1.21643 0.88099 1.03334 1.00921 1.21208 1.00198 0.93378 0.93848 0.86166 1.24178 0.76398 0.80437 0.87958 1.90566 1.37772 1.65814 1.48116 1.86499 1.70211 1.25897 1.44450 1.22506 0.93448 0.94379 0.84140 1.22024 0.98261 0.96026 0.98730 1.21067 0.85532 0.97871 0.93745 1.44392 1.06276 1.09374 1.73310 1.19602 0.94771 0.84991 1.40240 0.90583 1.25902 0.98606 1.01229 0.99094 1.70209 1.06769 1.32908 1.48578 0.85201 0.77145 0.79729 0.78020 1.20904 1.19013 1.22086 1.20503 0.93640 0.89957 0.89796 1.22432 0.95849 0.99261 1.00065 0.93899 0.91866 0.84554 0.89487 0.92634 0.88185 0.90988 0.88678 0.95287 0.85979 0.89927 0.92362 0.90885 0.88752 0.90492 0.96596 0.94057 0.98900 0.92123 0.91899 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -8.29 10.47 -51.41 -0.54 -8.83 16 3 C 0.46 12.31 6.28 71.24 0.45 12.76 16 4 O -0.54 -19.24 13.91 28.80 0.40 -18.84 16 5 C -0.06 -1.05 2.38 -11.54 -0.03 -1.08 16 6 H 0.17 1.45 8.14 -2.39 -0.02 1.43 16 7 C -0.13 -2.31 4.87 30.59 0.15 -2.16 16 8 C -0.11 -1.30 5.92 30.59 0.18 -1.12 16 9 C -0.13 -1.85 5.70 30.60 0.17 -1.67 16 10 C -0.10 -1.33 5.39 30.60 0.16 -1.16 16 11 C -0.07 -1.39 2.30 -11.54 -0.03 -1.42 16 12 H 0.12 2.36 8.10 -2.38 -0.02 2.34 16 13 C 0.47 15.03 4.71 71.24 0.34 15.36 16 14 O -0.53 -20.78 11.08 28.81 0.32 -20.47 16 15 O -0.35 -12.27 9.78 -51.43 -0.50 -12.77 16 16 C 0.11 4.36 2.41 30.62 0.07 4.43 16 17 C -0.11 -3.98 5.74 30.67 0.18 -3.80 16 18 C 0.14 6.11 6.51 86.36 0.56 6.68 16 19 N -0.61 -32.35 2.99 -698.28 -2.09 -34.44 16 20 C -0.27 -15.05 9.58 84.03 0.81 -14.24 16 21 H 0.08 4.08 7.89 -2.91 -0.02 4.06 16 22 C -0.05 -3.07 4.90 84.86 0.42 -2.65 16 23 N -0.94 -58.03 11.19 21.65 0.24 -57.79 16 24 Si 0.97 45.92 29.59 68.60 2.03 47.95 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C 0.19 10.11 5.34 86.51 0.46 10.57 16 29 C -0.14 -6.27 5.73 30.82 0.18 -6.09 16 30 H 0.04 1.03 8.13 -2.39 -0.02 1.01 16 31 H 0.06 1.21 8.13 -2.38 -0.02 1.19 16 32 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.38 8.11 -2.38 -0.02 1.36 16 34 H 0.06 1.52 5.52 -2.39 -0.01 1.50 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.03 0.61 7.22 -2.39 -0.02 0.59 16 39 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 41 H 0.06 2.52 7.16 -2.39 -0.02 2.50 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 47 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H 0.06 3.64 6.03 -2.39 -0.01 3.62 16 49 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -79.05 387.02 6.05 -73.00 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.92 Total: 15.97 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.27 Total: 16.21 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -1.85 Total: -92.23 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -0.32 Total: -60.90 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.05 6.05 -73.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122814851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.817 kcal (2) G-P(sol) polarization free energy of solvation -79.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds