Wall clock time and date at job start Tue Mar 31 2020 23:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47160 * 2 1 4 4 C 1.46504 * 119.99957 * 270.00407 * 3 2 1 5 5 C 1.50706 * 109.46822 * 269.99742 * 4 3 2 6 6 H 1.07993 * 120.00154 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99575 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99760 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46955 * 90.00028 * 9 7 5 11 11 H 1.48498 * 109.47294 * 210.00198 * 9 7 5 12 12 H 1.48506 * 109.46840 * 330.00147 * 9 7 5 13 13 C 1.34775 * 119.99661 * 90.00095 * 3 2 1 14 14 O 1.21282 * 119.99686 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00438 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47255 * 179.97438 * 15 13 3 17 17 C 1.46902 * 111.00010 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47411 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.47555 * 180.02562 * 18 17 16 20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 17 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18 23 23 N 1.46491 * 109.46957 * 179.72354 * 22 20 19 24 24 C 1.34595 * 126.44002 * 125.00057 * 23 22 20 25 25 N 1.31073 * 106.68189 * 179.97438 * 24 23 22 26 26 N 1.28841 * 107.99106 * 359.97438 * 25 24 23 27 27 N 1.28739 * 109.39430 * 359.73676 * 26 25 24 28 28 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46640 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.47070 * 59.99839 * 1 2 3 31 31 H 1.09003 * 109.46724 * 240.00573 * 2 1 3 32 32 H 1.08998 * 109.47070 * 120.00161 * 2 1 3 33 33 H 1.09000 * 109.47497 * 29.99931 * 4 3 2 34 34 H 1.08999 * 109.47220 * 150.00236 * 4 3 2 35 35 H 0.96995 * 119.99905 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47104 * 59.99618 * 15 13 3 37 37 H 1.09004 * 109.46967 * 300.00081 * 15 13 3 38 38 H 1.00894 * 111.00567 * 303.95626 * 16 15 13 39 39 H 1.08998 * 109.47017 * 59.99899 * 17 16 15 40 40 H 1.09005 * 109.46806 * 299.99918 * 17 16 15 41 41 H 1.08998 * 109.47382 * 59.99793 * 18 17 16 42 42 H 1.09002 * 109.47216 * 300.00230 * 18 17 16 43 43 H 0.97000 * 119.99484 * 359.97438 * 19 18 17 44 44 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 45 45 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 46 46 H 1.08003 * 126.66266 * 359.95789 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6176 9 14 5.9133 2.0965 -3.4172 10 1 5.9759 0.8760 -4.2608 11 1 6.3929 3.2641 -4.1994 12 1 6.7735 1.9156 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3060 2.4723 16 7 2.3111 2.2058 3.5888 17 6 2.0776 1.5455 4.8802 18 6 2.4192 2.5118 6.0162 19 7 2.1869 1.8532 7.3040 20 6 2.4214 2.5178 8.4528 21 8 2.8251 3.6610 8.4204 22 6 2.1884 1.8381 9.7775 23 7 2.5199 2.7618 10.8652 24 6 1.7129 3.1255 11.8791 25 7 2.3965 3.9603 12.6232 26 7 3.5628 4.1015 12.0943 27 7 3.6428 3.3742 11.0351 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 3.6755 3.5177 -4.4431 36 1 2.6229 0.4186 2.5298 37 1 0.9445 1.0114 2.5302 38 1 3.2593 2.5439 3.5215 39 1 2.7081 0.6595 4.9544 40 1 1.0301 1.2534 4.9547 41 1 1.7884 3.3976 5.9418 42 1 3.4665 2.8044 5.9418 43 1 1.8637 0.9389 7.3298 44 1 1.1415 1.5449 9.8563 45 1 2.8200 0.9526 9.8476 46 1 0.6988 2.7941 12.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123304810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:34 Heat of formation + Delta-G solvation = 64.294580 kcal Electronic energy + Delta-G solvation = -28006.055428 eV Core-core repulsion = 23776.519167 eV Total energy + Delta-G solvation = -4229.536261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.57757 -40.40061 -39.21657 -36.90335 -35.88316 -35.35523 -34.66335 -32.86790 -32.81847 -30.81613 -30.14900 -29.12639 -27.36780 -25.41577 -24.26487 -23.87106 -23.07852 -22.59057 -22.21003 -21.29589 -18.73273 -18.34976 -18.29423 -17.06704 -16.67037 -16.58925 -16.50284 -16.32907 -16.14670 -15.89741 -15.48971 -14.76173 -14.57709 -14.34102 -13.90451 -13.80282 -13.52188 -13.37526 -13.35092 -13.06569 -12.55410 -12.49592 -12.33021 -12.04185 -11.89961 -11.77402 -11.64904 -11.53915 -11.52119 -11.21560 -10.95019 -10.86652 -10.80109 -10.57142 -10.49895 -10.16353 -9.71289 -9.67098 -9.02360 -8.53611 -8.46542 -7.70624 -6.07285 -4.12368 0.78504 1.30052 1.81477 1.89521 2.34974 3.27022 3.33480 3.35644 3.40053 3.49464 3.64941 3.73157 3.86124 4.02275 4.25854 4.30814 4.42377 4.50343 4.71104 4.96321 4.99405 5.04502 5.16848 5.23209 5.27218 5.33818 5.39793 5.48474 5.54765 5.56955 5.58403 5.72172 5.73417 5.94371 6.16630 6.41015 6.62637 6.72587 7.05429 7.18386 7.42402 7.44620 7.51001 7.88969 8.20123 8.21425 8.38025 8.86813 9.05998 9.52925 11.00699 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.020258 B = 0.001591 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.838733 B =17594.456727 C =18500.036196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.720 5.720 20 C 0.499 3.501 21 O -0.503 6.503 22 C 0.097 3.903 23 N -0.303 5.303 24 C 0.160 3.840 25 N -0.306 5.306 26 N -0.076 5.076 27 N -0.063 5.063 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.356 0.644 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.403 0.597 44 H 0.145 0.855 45 H 0.137 0.863 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -13.585 25.423 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.288 3.712 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.304 5.304 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.374 5.374 20 C 0.281 3.719 21 O -0.376 6.376 22 C -0.029 4.029 23 N -0.105 5.105 24 C -0.138 4.138 25 N -0.153 5.153 26 N -0.070 5.070 27 N -0.049 5.049 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.176 0.824 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.237 0.763 44 H 0.163 0.837 45 H 0.155 0.845 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.884 -10.914 25.532 29.153 hybrid contribution 0.584 -2.037 -0.881 2.295 sum -8.299 -12.951 24.652 29.057 Atomic orbital electron populations 1.22227 0.96785 1.01343 1.02425 1.21409 0.93520 0.84305 1.02553 1.48256 1.63964 1.13177 1.07709 1.19264 0.96202 0.93700 0.78031 1.21422 0.96955 1.31970 1.06317 0.92565 1.24937 0.97840 0.94895 0.96417 1.69928 1.35681 1.33292 1.14323 0.86504 0.84668 0.77691 0.78577 1.20669 1.21048 1.19958 1.20121 0.79094 0.87114 0.84850 1.90695 1.45021 1.17693 1.86876 1.21900 1.02378 0.94200 0.90417 1.59949 1.33262 1.37585 0.99562 1.22059 1.01742 0.94968 0.89137 1.21364 1.02769 0.96311 0.79944 1.45706 1.68398 1.17640 1.05632 1.20118 0.79314 0.87271 0.85182 1.90907 1.42969 1.17034 1.86725 1.21972 1.06131 0.91518 0.83277 1.48153 1.10037 1.32192 1.20129 1.27767 1.01325 0.97812 0.86939 1.75013 1.00514 1.15177 1.24591 1.78714 1.11804 1.15054 1.01454 1.79049 1.05696 1.06058 1.14086 0.92225 0.93069 0.91953 0.89932 0.91988 0.95036 0.93845 0.92689 0.92753 0.88630 0.82355 0.94557 0.90254 0.89745 0.90766 0.76251 0.83739 0.84548 0.74774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.60 -11.93 2.46 -175.05 -0.43 -12.36 16 4 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 5 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.50 9.82 7.71 -10.99 -0.08 9.73 16 14 O -0.53 -12.88 15.78 5.56 0.09 -12.79 16 15 C 0.04 0.56 4.72 -4.98 -0.02 0.54 16 16 N -0.67 -8.16 6.12 -115.06 -0.70 -8.86 16 17 C 0.05 0.37 5.80 -3.82 -0.02 0.35 16 18 C 0.12 0.91 5.93 -4.04 -0.02 0.89 16 19 N -0.72 -3.08 5.56 -60.29 -0.33 -3.41 16 20 C 0.50 3.21 7.85 -10.98 -0.09 3.12 16 21 O -0.50 -6.39 15.71 5.55 0.09 -6.31 16 22 C 0.10 0.17 6.96 -5.20 -0.04 0.14 16 23 N -0.30 -2.04 3.19 -63.74 -0.20 -2.24 16 24 C 0.16 0.90 12.79 -90.39 -1.16 -0.26 16 25 N -0.31 -3.24 12.36 29.59 0.37 -2.87 16 26 N -0.08 -0.99 13.43 60.35 0.81 -0.18 16 27 N -0.06 -0.73 12.31 60.35 0.74 0.01 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.05 0.60 7.40 -51.93 -0.38 0.22 16 37 H 0.10 1.04 7.19 -51.93 -0.37 0.67 16 38 H 0.36 4.78 8.43 -39.30 -0.33 4.45 16 39 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.40 0.09 8.47 -40.82 -0.35 -0.25 16 44 H 0.14 -0.48 8.08 -51.93 -0.42 -0.90 16 45 H 0.14 -0.13 8.14 -51.93 -0.42 -0.56 16 46 H 0.24 -0.14 8.06 -52.48 -0.42 -0.56 16 LS Contribution 396.97 15.07 5.98 5.98 Total: -1.00 -42.38 396.97 -6.12 -48.50 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.71 Total: -3.77 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.52 Total: 7.28 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.98 Total: -55.48 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -42.38 -6.12 -48.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123304810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.790 kcal (2) G-P(sol) polarization free energy of solvation -42.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds