Wall clock time and date at job start Tue Mar 31 2020 23:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47160 * 2 1 4 4 C 1.46504 * 119.99957 * 270.00407 * 3 2 1 5 5 C 1.50706 * 109.46822 * 269.99742 * 4 3 2 6 6 H 1.07993 * 120.00154 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99575 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99760 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46955 * 90.00028 * 9 7 5 11 11 H 1.48498 * 109.47294 * 210.00198 * 9 7 5 12 12 H 1.48506 * 109.46840 * 330.00147 * 9 7 5 13 13 C 1.34775 * 119.99661 * 90.00095 * 3 2 1 14 14 O 1.21282 * 119.99686 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00438 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47255 * 179.97438 * 15 13 3 17 17 C 1.46902 * 111.00010 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47411 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.47555 * 180.02562 * 18 17 16 20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 17 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18 23 23 N 1.46491 * 109.46957 * 179.72354 * 22 20 19 24 24 C 1.34595 * 126.44002 * 125.00057 * 23 22 20 25 25 N 1.31073 * 106.68189 * 179.97438 * 24 23 22 26 26 N 1.28841 * 107.99106 * 359.97438 * 25 24 23 27 27 N 1.28739 * 109.39430 * 359.73676 * 26 25 24 28 28 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46640 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.47070 * 59.99839 * 1 2 3 31 31 H 1.09003 * 109.46724 * 240.00573 * 2 1 3 32 32 H 1.08998 * 109.47070 * 120.00161 * 2 1 3 33 33 H 1.09000 * 109.47497 * 29.99931 * 4 3 2 34 34 H 1.08999 * 109.47220 * 150.00236 * 4 3 2 35 35 H 0.96995 * 119.99905 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47104 * 59.99618 * 15 13 3 37 37 H 1.09004 * 109.46967 * 300.00081 * 15 13 3 38 38 H 1.00894 * 111.00567 * 303.95626 * 16 15 13 39 39 H 1.08998 * 109.47017 * 59.99899 * 17 16 15 40 40 H 1.09005 * 109.46806 * 299.99918 * 17 16 15 41 41 H 1.08998 * 109.47382 * 59.99793 * 18 17 16 42 42 H 1.09002 * 109.47216 * 300.00230 * 18 17 16 43 43 H 0.97000 * 119.99484 * 359.97438 * 19 18 17 44 44 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 45 45 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 46 46 H 1.08003 * 126.66266 * 359.95789 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6176 9 14 5.9133 2.0965 -3.4172 10 1 5.9759 0.8760 -4.2608 11 1 6.3929 3.2641 -4.1994 12 1 6.7735 1.9156 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3060 2.4723 16 7 2.3111 2.2058 3.5888 17 6 2.0776 1.5455 4.8802 18 6 2.4192 2.5118 6.0162 19 7 2.1869 1.8532 7.3040 20 6 2.4214 2.5178 8.4528 21 8 2.8251 3.6610 8.4204 22 6 2.1884 1.8381 9.7775 23 7 2.5199 2.7618 10.8652 24 6 1.7129 3.1255 11.8791 25 7 2.3965 3.9603 12.6232 26 7 3.5628 4.1015 12.0943 27 7 3.6428 3.3742 11.0351 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 3.6755 3.5177 -4.4431 36 1 2.6229 0.4186 2.5298 37 1 0.9445 1.0114 2.5302 38 1 3.2593 2.5439 3.5215 39 1 2.7081 0.6595 4.9544 40 1 1.0301 1.2534 4.9547 41 1 1.7884 3.3976 5.9418 42 1 3.4665 2.8044 5.9418 43 1 1.8637 0.9389 7.3298 44 1 1.1415 1.5449 9.8563 45 1 2.8200 0.9526 9.8476 46 1 0.6988 2.7941 12.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123304810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:33 Heat of formation + Delta-G solvation = 27.108191 kcal Electronic energy + Delta-G solvation = -28007.667951 eV Core-core repulsion = 23776.519167 eV Total energy + Delta-G solvation = -4231.148784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.15613 -40.95298 -40.68124 -37.68992 -36.87766 -36.41240 -35.46952 -34.86075 -33.46091 -31.72390 -31.33504 -29.93832 -28.82578 -26.66051 -24.89195 -24.71866 -24.37758 -23.74401 -23.08878 -21.80842 -19.98187 -18.99989 -18.74452 -18.61336 -17.90616 -17.54737 -17.34273 -17.16193 -17.03255 -16.64777 -16.54795 -16.21462 -15.63746 -15.08306 -14.98858 -14.70976 -14.61672 -14.40891 -14.32355 -14.10396 -13.57494 -13.48735 -13.44493 -13.21906 -13.13135 -13.05385 -12.66574 -12.64759 -12.47606 -12.40269 -12.20927 -12.14295 -12.12827 -11.83853 -11.71518 -11.49848 -11.06451 -10.64822 -10.56445 -10.25659 -9.43576 -9.38439 -8.22714 -6.37855 0.27776 0.99999 1.26818 1.35043 1.38546 1.39023 1.48284 1.89020 1.90582 2.30111 2.44363 3.06610 3.17149 3.40654 3.50767 3.66725 3.73624 3.87551 4.04410 4.05540 4.11181 4.14903 4.36317 4.40354 4.41136 4.48551 4.54248 4.70332 4.73118 4.88676 4.92484 4.96500 5.02806 5.08078 5.21788 5.23273 5.25678 5.43417 5.58444 5.83690 5.94069 6.06771 6.23033 6.38691 6.71053 6.86077 7.10488 7.28957 7.54915 7.58768 8.84038 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.020258 B = 0.001591 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.838733 B =17594.456727 C =18500.036196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.489 3.511 14 O -0.591 6.591 15 C 0.063 3.937 16 N -0.697 5.697 17 C 0.061 3.939 18 C 0.126 3.874 19 N -0.697 5.697 20 C 0.493 3.507 21 O -0.578 6.578 22 C 0.097 3.903 23 N -0.300 5.300 24 C 0.185 3.815 25 N -0.351 5.351 26 N -0.122 5.122 27 N -0.100 5.100 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.020 0.980 34 H -0.008 1.008 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.344 0.656 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.428 0.572 44 H 0.211 0.789 45 H 0.173 0.827 46 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 -18.223 27.136 34.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.278 3.722 14 O -0.472 6.472 15 C -0.069 4.069 16 N -0.330 5.330 17 C -0.068 4.068 18 C 0.001 3.999 19 N -0.352 5.352 20 C 0.278 3.722 21 O -0.456 6.456 22 C -0.025 4.025 23 N -0.103 5.103 24 C -0.112 4.112 25 N -0.198 5.198 26 N -0.117 5.117 27 N -0.087 5.087 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.038 0.962 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.267 0.733 44 H 0.227 0.773 45 H 0.190 0.810 46 H 0.314 0.686 Dipole moment (debyes) X Y Z Total from point charges -10.563 -15.687 27.257 33.175 hybrid contribution 0.960 -0.649 -1.448 1.855 sum -9.602 -16.336 25.809 32.018 Atomic orbital electron populations 1.22162 0.94600 1.03516 1.01663 1.21773 0.95290 0.81174 1.04047 1.48289 1.64083 1.15185 1.06100 1.18654 0.95159 0.91412 0.80691 1.21732 0.97967 1.31899 1.06490 0.92704 1.25879 1.02375 0.94514 0.96543 1.70057 1.37785 1.34207 1.14801 0.85415 0.79005 0.78160 0.78206 1.18672 1.20905 1.19753 1.21429 0.77365 0.86688 0.86762 1.90660 1.47755 1.20772 1.87969 1.21803 1.04770 0.93864 0.86417 1.59930 1.32657 1.38933 1.01465 1.22087 1.03770 0.94852 0.86074 1.21058 1.00634 0.96191 0.82053 1.45437 1.67331 1.18459 1.03981 1.20999 0.77642 0.86496 0.87050 1.90898 1.46363 1.20471 1.87854 1.22588 1.10771 0.90354 0.78834 1.48471 1.08843 1.31847 1.21107 1.28842 1.02405 0.95019 0.84952 1.74879 1.00643 1.17655 1.26612 1.78666 1.13589 1.16774 1.02636 1.78935 1.08404 1.07191 1.14177 0.88468 0.91801 0.94805 0.91287 0.87604 0.96184 0.98962 0.92485 0.89614 0.85450 0.83803 0.91822 0.87663 0.92551 0.93354 0.73265 0.77261 0.80988 0.68636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 10.24 71.98 0.74 -2.70 16 2 C 0.10 2.67 5.93 86.38 0.51 3.18 16 3 N -0.60 -24.27 2.46 -826.13 -2.03 -26.30 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 9 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.49 19.13 7.71 87.65 0.68 19.81 16 14 O -0.59 -30.38 15.78 -3.04 -0.05 -30.43 16 15 C 0.06 1.44 4.72 85.56 0.40 1.84 16 16 N -0.70 -15.88 6.12 -517.94 -3.17 -19.06 16 17 C 0.06 0.67 5.80 86.30 0.50 1.17 16 18 C 0.13 1.79 5.93 86.38 0.51 2.31 16 19 N -0.70 -3.84 5.56 -463.06 -2.57 -6.41 16 20 C 0.49 5.31 7.85 87.66 0.69 6.00 16 21 O -0.58 -15.06 15.71 -3.04 -0.05 -15.11 16 22 C 0.10 -0.09 6.96 85.64 0.60 0.50 16 23 N -0.30 -3.33 3.19 -355.58 -1.13 -4.46 16 24 C 0.19 1.54 12.79 180.27 2.31 3.84 16 25 N -0.35 -7.30 12.36 -60.29 -0.74 -8.05 16 26 N -0.12 -3.35 13.43 37.01 0.50 -2.85 16 27 N -0.10 -2.36 12.31 37.02 0.46 -1.90 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.21 7.22 -2.39 -0.02 1.19 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 32 H 0.11 1.93 6.44 -2.39 -0.02 1.92 16 33 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 34 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.09 1.46 7.40 -2.38 -0.02 1.44 16 37 H 0.13 2.12 7.19 -2.38 -0.02 2.11 16 38 H 0.34 9.29 8.43 -89.70 -0.76 8.54 16 39 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.43 -2.03 8.47 -92.71 -0.79 -2.82 16 44 H 0.21 -2.97 8.08 -2.38 -0.02 -2.99 16 45 H 0.17 -1.29 8.14 -2.39 -0.02 -1.31 16 46 H 0.30 -2.09 8.06 -2.91 -0.02 -2.11 16 Total: -1.00 -107.78 396.97 1.08 -106.70 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: -0.52 Total: -3.23 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 8.08 Total: 20.43 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -8.41 Total: -125.23 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.10 Total: -45.53 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -107.78 1.08 -106.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123304810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.810 kcal (2) G-P(sol) polarization free energy of solvation -107.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds