Wall clock time and date at job start Tue Mar 31 2020 23:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 F 1.39908 * 109.47016 * 240.00553 * 2 1 3 5 5 C 1.50700 * 109.47443 * 120.00371 * 2 1 3 6 6 O 1.21283 * 119.99803 * 249.99837 * 5 2 1 7 7 N 1.34777 * 119.99675 * 70.27712 * 5 2 1 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 2 9 9 H 1.08997 * 107.88221 * 34.99926 * 8 7 5 10 10 C 1.50955 * 108.02956 * 278.44720 * 8 7 5 11 11 C 1.53677 * 110.96009 * 165.70802 * 10 8 7 12 12 C 1.51883 * 106.89835 * 79.09836 * 11 10 8 13 13 N 1.29896 * 127.81269 * 114.88238 * 12 11 10 14 14 N 1.29034 * 109.22681 * 180.26364 * 13 12 11 15 15 C 1.30977 * 109.70364 * 359.92375 * 14 13 12 16 16 C 1.50694 * 126.61073 * 179.89274 * 15 14 13 17 17 N 1.46502 * 109.47381 * 90.02215 * 16 15 14 18 18 C 1.36935 * 120.00007 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00360 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00515 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46865 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47033 * 120.00202 * 22 20 18 25 25 H 1.48507 * 109.47053 * 240.00389 * 22 20 18 26 26 N 1.34592 * 124.57178 * 294.91979 * 12 11 10 27 27 C 1.47505 * 125.03549 * 359.46637 * 26 12 11 28 28 C 1.50871 * 108.02858 * 151.54668 * 8 7 5 29 29 H 1.09002 * 109.46827 * 299.99216 * 1 2 3 30 30 H 1.08996 * 109.47137 * 59.99869 * 1 2 3 31 31 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46794 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47136 * 300.00620 * 3 2 1 34 34 H 1.09002 * 109.46640 * 60.00669 * 3 2 1 35 35 H 0.97000 * 119.99894 * 359.71837 * 7 5 2 36 36 H 1.09000 * 109.17415 * 286.08226 * 10 8 7 37 37 H 1.08992 * 109.18004 * 45.37357 * 10 8 7 38 38 H 1.09005 * 109.96138 * 198.44514 * 11 10 8 39 39 H 1.08995 * 109.96605 * 319.74639 * 11 10 8 40 40 H 1.08995 * 109.47019 * 210.02627 * 16 15 14 41 41 H 1.09007 * 109.47088 * 330.02551 * 16 15 14 42 42 H 0.97005 * 119.99488 * 0.02562 * 17 16 15 43 43 H 0.97000 * 120.00610 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.92920 * 185.37078 * 27 26 12 45 45 H 1.09000 * 109.93162 * 306.58222 * 27 26 12 46 46 H 1.08999 * 109.14292 * 314.85320 * 28 8 7 47 47 H 1.08997 * 109.14237 * 74.00195 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 2.5733 -0.0817 2.1153 7 7 1.8857 -2.0453 1.3448 8 6 2.3795 -2.7368 2.5382 9 1 2.2377 -2.0739 3.3918 10 6 3.8615 -2.9659 2.3658 11 6 4.5160 -3.3586 3.6996 12 6 4.2139 -4.8302 3.9232 13 7 5.0554 -5.8190 3.9620 14 7 4.4109 -6.9177 4.1680 15 6 3.1296 -6.6656 4.2698 16 6 2.0322 -7.6703 4.5089 17 7 1.8179 -7.8259 5.9498 18 6 0.8635 -8.6931 6.4103 19 1 0.2689 -9.2627 5.7114 20 6 0.6609 -8.8409 7.7756 21 7 1.3857 -8.1472 8.6274 22 14 -0.6407 -10.0244 8.4039 23 1 -1.3132 -10.6776 7.2522 24 1 0.0004 -11.0587 9.2552 25 1 -1.6443 -9.2773 9.2039 26 7 2.9821 -5.3357 4.1197 27 6 1.7383 -4.5439 4.1601 28 6 1.5277 -3.9634 2.7531 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.4530 -2.5481 0.6370 36 1 4.0183 -3.7649 1.6411 37 1 4.3247 -2.0512 1.9960 38 1 5.5936 -3.2039 3.6452 39 1 4.0941 -2.7646 4.5103 40 1 1.1120 -7.3216 4.0402 41 1 2.3182 -8.6300 4.0784 42 1 2.3522 -7.3146 6.5775 43 1 1.2444 -8.2507 9.5815 44 1 0.8982 -5.1849 4.4273 45 1 1.8356 -3.7358 4.8851 46 1 0.4783 -3.6958 2.6305 47 1 1.7926 -4.7169 2.0115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127917304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:31 Heat of formation + Delta-G solvation = 1.522191 kcal Electronic energy + Delta-G solvation = -30013.640203 eV Core-core repulsion = 25761.461965 eV Total energy + Delta-G solvation = -4252.178238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.40801 -43.02734 -40.48085 -37.82061 -35.23714 -34.68340 -34.20227 -33.44906 -31.51271 -31.26858 -29.42092 -28.04243 -26.67621 -25.92367 -24.28925 -23.87742 -22.89438 -21.35943 -20.65379 -20.56086 -19.96230 -18.41191 -17.47671 -17.21887 -16.80230 -16.45040 -15.81616 -15.57804 -15.38315 -15.09110 -14.93811 -14.78508 -14.19116 -14.05612 -13.72379 -13.63113 -13.31903 -13.06251 -12.97574 -12.96191 -12.83136 -12.63698 -12.61749 -12.57409 -12.35926 -11.97602 -11.79009 -11.61058 -11.55171 -11.19869 -11.07929 -10.93573 -10.89977 -10.27884 -10.15753 -9.95859 -9.95016 -9.85172 -9.63438 -9.02908 -8.70347 -7.09443 -5.86148 -3.18525 1.94386 2.12560 2.42630 2.68470 3.21569 3.37871 3.43807 3.46187 3.73985 3.86903 4.03011 4.09778 4.22181 4.31154 4.38859 4.48756 4.52204 4.72477 4.84803 4.88923 4.90711 4.95949 5.03779 5.05599 5.11365 5.24696 5.29312 5.35472 5.37840 5.41902 5.49423 5.58374 5.61632 5.67354 5.75101 5.81813 5.93448 5.94364 6.16474 6.27472 6.51757 6.56539 6.87689 7.13935 7.56969 7.59323 8.28916 9.11862 9.41653 9.92316 10.28530 11.35957 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002427 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.346466 B =11535.733054 C =12406.476618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 C -0.159 4.159 4 F -0.195 7.195 5 C 0.501 3.499 6 O -0.518 6.518 7 N -0.719 5.719 8 C 0.143 3.857 9 H 0.090 0.910 10 C -0.126 4.126 11 C -0.022 4.022 12 C 0.158 3.842 13 N -0.295 5.295 14 N -0.293 5.293 15 C 0.193 3.807 16 C 0.236 3.764 17 N -0.724 5.724 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.928 5.928 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 N -0.463 5.463 27 C 0.111 3.889 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.404 0.596 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 20.442 -19.684 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.080 3.920 3 C -0.217 4.217 4 F -0.176 7.176 5 C 0.285 3.715 6 O -0.393 6.393 7 N -0.370 5.370 8 C 0.039 3.961 9 H 0.108 0.892 10 C -0.165 4.165 11 C -0.063 4.063 12 C -0.110 4.110 13 N -0.135 5.135 14 N -0.133 5.133 15 C -0.074 4.074 16 C 0.107 3.893 17 N -0.371 5.371 18 C -0.377 4.377 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.575 5.575 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 N -0.154 5.154 27 C -0.012 4.012 28 C -0.182 4.182 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.136 0.864 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.768 19.971 -19.096 27.688 hybrid contribution -1.871 -0.148 0.292 1.899 sum -3.639 19.823 -18.804 27.564 Atomic orbital electron populations 1.22398 0.91313 1.04411 1.04924 1.21231 0.96505 0.93643 0.80600 1.22186 1.03239 0.92115 1.04125 1.92931 1.90260 1.82653 1.51760 1.20828 0.79367 0.82722 0.88605 1.90757 1.41553 1.65878 1.41103 1.46237 1.60762 1.07390 1.22618 1.20468 0.93267 0.93846 0.88516 0.89223 1.21696 0.94072 1.02976 0.97778 1.20354 1.03212 0.85298 0.97417 1.24608 0.81899 0.98691 1.05771 1.74194 1.26186 0.94782 1.18358 1.74584 1.01367 1.18818 1.18549 1.25253 0.96732 0.83204 1.02230 1.19055 0.88905 0.92231 0.89117 1.42307 1.44451 1.51506 0.98789 1.19221 1.11004 1.16693 0.90814 0.90676 1.24795 0.99810 1.00085 0.95855 1.69689 1.42261 1.43954 1.01640 0.86070 0.80763 0.80322 0.78676 1.20388 1.21670 1.21810 1.46037 1.08695 1.07768 1.52874 1.22298 0.85693 0.96227 0.97023 1.21943 1.01220 0.97373 0.97661 0.89796 0.89867 0.90779 0.90709 0.90570 0.89597 0.76153 0.91011 0.89834 0.87704 0.89356 0.94584 0.92551 0.77928 0.93339 0.86381 0.88397 0.88552 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 8.91 37.16 0.33 -0.39 16 2 C 0.10 0.67 1.54 -91.77 -0.14 0.52 16 3 C -0.16 -0.95 8.28 37.16 0.31 -0.64 16 4 F -0.20 -1.54 16.73 2.25 0.04 -1.50 16 5 C 0.50 4.28 6.45 -10.98 -0.07 4.20 16 6 O -0.52 -6.03 15.30 5.55 0.09 -5.94 16 7 N -0.72 -5.08 4.92 -55.86 -0.27 -5.35 16 8 C 0.14 1.17 1.91 -70.03 -0.13 1.03 16 9 H 0.09 0.81 7.01 -51.93 -0.36 0.45 16 10 C -0.13 -1.19 5.12 -27.41 -0.14 -1.33 16 11 C -0.02 -0.25 6.02 -26.95 -0.16 -0.41 16 12 C 0.16 2.46 7.03 -155.75 -1.09 1.36 16 13 N -0.30 -5.78 12.23 32.84 0.40 -5.38 16 14 N -0.29 -6.29 12.25 32.71 0.40 -5.89 16 15 C 0.19 3.69 7.45 -155.39 -1.16 2.53 16 16 C 0.24 4.71 6.48 -5.20 -0.03 4.68 16 17 N -0.72 -18.05 5.59 -61.09 -0.34 -18.39 16 18 C -0.25 -6.64 9.99 -15.06 -0.15 -6.79 16 19 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 N -0.46 -7.03 2.72 -109.58 -0.30 -7.33 16 27 C 0.11 1.22 6.47 -3.16 -0.02 1.20 16 28 C -0.14 -1.12 5.07 -27.46 -0.14 -1.26 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.50 7.99 -51.93 -0.41 0.09 16 35 H 0.40 2.11 8.54 -40.82 -0.35 1.76 16 36 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.08 0.81 7.54 -51.93 -0.39 0.42 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 0.87 7.89 -51.93 -0.41 0.46 16 40 H 0.04 0.64 7.46 -51.93 -0.39 0.25 16 41 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 42 H 0.39 10.59 7.66 -40.82 -0.31 10.28 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 1.36 7.16 -51.93 -0.37 0.99 16 45 H 0.10 0.97 7.87 -51.93 -0.41 0.56 16 46 H 0.10 0.54 8.12 -51.93 -0.42 0.12 16 47 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -35.22 386.25 -8.34 -43.56 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.17 Total: 6.34 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -2.70 Total: 4.37 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: 0.61 Total: -69.42 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: 0.09 Total: -5.94 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.22 -8.34 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127917304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.079 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds