Wall clock time and date at job start Tue Mar 31 2020 23:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 F 1.39908 * 109.47016 * 240.00553 * 2 1 3 5 5 C 1.50700 * 109.47443 * 120.00371 * 2 1 3 6 6 O 1.21283 * 119.99803 * 249.99837 * 5 2 1 7 7 N 1.34777 * 119.99675 * 70.27712 * 5 2 1 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 2 9 9 H 1.08997 * 107.88221 * 34.99926 * 8 7 5 10 10 C 1.50955 * 108.02956 * 278.44720 * 8 7 5 11 11 C 1.53677 * 110.96009 * 165.70802 * 10 8 7 12 12 C 1.51883 * 106.89835 * 79.09836 * 11 10 8 13 13 N 1.29896 * 127.81269 * 114.88238 * 12 11 10 14 14 N 1.29034 * 109.22681 * 180.26364 * 13 12 11 15 15 C 1.30977 * 109.70364 * 359.92375 * 14 13 12 16 16 C 1.50694 * 126.61073 * 179.89274 * 15 14 13 17 17 N 1.46502 * 109.47381 * 90.02215 * 16 15 14 18 18 C 1.36935 * 120.00007 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00360 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00515 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46865 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47033 * 120.00202 * 22 20 18 25 25 H 1.48507 * 109.47053 * 240.00389 * 22 20 18 26 26 N 1.34592 * 124.57178 * 294.91979 * 12 11 10 27 27 C 1.47505 * 125.03549 * 359.46637 * 26 12 11 28 28 C 1.50871 * 108.02858 * 151.54668 * 8 7 5 29 29 H 1.09002 * 109.46827 * 299.99216 * 1 2 3 30 30 H 1.08996 * 109.47137 * 59.99869 * 1 2 3 31 31 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46794 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47136 * 300.00620 * 3 2 1 34 34 H 1.09002 * 109.46640 * 60.00669 * 3 2 1 35 35 H 0.97000 * 119.99894 * 359.71837 * 7 5 2 36 36 H 1.09000 * 109.17415 * 286.08226 * 10 8 7 37 37 H 1.08992 * 109.18004 * 45.37357 * 10 8 7 38 38 H 1.09005 * 109.96138 * 198.44514 * 11 10 8 39 39 H 1.08995 * 109.96605 * 319.74639 * 11 10 8 40 40 H 1.08995 * 109.47019 * 210.02627 * 16 15 14 41 41 H 1.09007 * 109.47088 * 330.02551 * 16 15 14 42 42 H 0.97005 * 119.99488 * 0.02562 * 17 16 15 43 43 H 0.97000 * 120.00610 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.92920 * 185.37078 * 27 26 12 45 45 H 1.09000 * 109.93162 * 306.58222 * 27 26 12 46 46 H 1.08999 * 109.14292 * 314.85320 * 28 8 7 47 47 H 1.08997 * 109.14237 * 74.00195 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 2.5733 -0.0817 2.1153 7 7 1.8857 -2.0453 1.3448 8 6 2.3795 -2.7368 2.5382 9 1 2.2377 -2.0739 3.3918 10 6 3.8615 -2.9659 2.3658 11 6 4.5160 -3.3586 3.6996 12 6 4.2139 -4.8302 3.9232 13 7 5.0554 -5.8190 3.9620 14 7 4.4109 -6.9177 4.1680 15 6 3.1296 -6.6656 4.2698 16 6 2.0322 -7.6703 4.5089 17 7 1.8179 -7.8259 5.9498 18 6 0.8635 -8.6931 6.4103 19 1 0.2689 -9.2627 5.7114 20 6 0.6609 -8.8409 7.7756 21 7 1.3857 -8.1472 8.6274 22 14 -0.6407 -10.0244 8.4039 23 1 -1.3132 -10.6776 7.2522 24 1 0.0004 -11.0587 9.2552 25 1 -1.6443 -9.2773 9.2039 26 7 2.9821 -5.3357 4.1197 27 6 1.7383 -4.5439 4.1601 28 6 1.5277 -3.9634 2.7531 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.4530 -2.5481 0.6370 36 1 4.0183 -3.7649 1.6411 37 1 4.3247 -2.0512 1.9960 38 1 5.5936 -3.2039 3.6452 39 1 4.0941 -2.7646 4.5103 40 1 1.1120 -7.3216 4.0402 41 1 2.3182 -8.6300 4.0784 42 1 2.3522 -7.3146 6.5775 43 1 1.2444 -8.2507 9.5815 44 1 0.8982 -5.1849 4.4273 45 1 1.8356 -3.7358 4.8851 46 1 0.4783 -3.6958 2.6305 47 1 1.7926 -4.7169 2.0115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127917304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:30 Heat of formation + Delta-G solvation = -22.186007 kcal Electronic energy + Delta-G solvation = -30014.668267 eV Core-core repulsion = 25761.461965 eV Total energy + Delta-G solvation = -4253.206302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.95737 -44.35619 -41.17371 -38.65306 -36.93206 -35.80032 -34.81736 -34.48653 -33.27073 -32.18343 -30.90804 -28.45095 -27.91979 -27.22081 -25.42457 -24.73473 -24.49898 -22.39715 -21.70704 -21.37491 -20.97001 -19.41870 -18.98154 -18.26104 -17.66920 -17.15127 -16.93043 -16.60082 -16.25568 -16.14489 -15.91765 -15.81825 -15.72701 -15.11312 -14.92703 -14.54484 -14.35900 -14.20200 -14.03665 -13.89092 -13.53387 -13.37265 -13.33548 -13.19806 -13.05885 -12.99791 -12.92706 -12.82436 -12.70215 -12.52763 -12.21258 -12.06973 -12.03908 -11.89816 -11.88636 -11.37502 -11.21033 -11.03141 -10.82920 -10.32761 -10.12265 -9.12188 -7.97487 -5.30345 0.80355 1.30497 1.48896 1.51548 1.51826 1.61239 1.77004 1.83925 2.56214 3.12653 3.20085 3.33884 3.37491 3.43423 3.45237 3.57699 3.66868 3.71568 3.80739 3.89894 3.97372 4.05667 4.17114 4.24536 4.28081 4.43789 4.55526 4.60267 4.63292 4.64796 4.69464 4.80283 4.83781 4.92870 4.97215 4.99914 5.04956 5.06152 5.09851 5.14887 5.17930 5.29436 5.48705 5.91681 6.19631 6.29938 6.96804 7.27601 7.71485 7.92393 8.19590 9.26070 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002427 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.346466 B =11535.733054 C =12406.476618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 C -0.160 4.160 4 F -0.203 7.203 5 C 0.499 3.501 6 O -0.552 6.552 7 N -0.708 5.708 8 C 0.146 3.854 9 H 0.087 0.913 10 C -0.116 4.116 11 C -0.020 4.020 12 C 0.177 3.823 13 N -0.338 5.338 14 N -0.336 5.336 15 C 0.181 3.819 16 C 0.241 3.759 17 N -0.736 5.736 18 C -0.243 4.243 19 H 0.090 0.910 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.259 1.259 24 H -0.299 1.299 25 H -0.292 1.292 26 N -0.455 5.455 27 C 0.102 3.898 28 C -0.129 4.129 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.415 0.585 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.128 0.872 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 21.561 -21.399 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.080 3.920 3 C -0.218 4.218 4 F -0.184 7.184 5 C 0.284 3.716 6 O -0.430 6.430 7 N -0.359 5.359 8 C 0.042 3.958 9 H 0.106 0.894 10 C -0.156 4.156 11 C -0.060 4.060 12 C -0.092 4.092 13 N -0.178 5.178 14 N -0.177 5.177 15 C -0.088 4.088 16 C 0.113 3.887 17 N -0.380 5.380 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.266 4.266 21 N -0.621 5.621 22 Si 0.808 3.192 23 H -0.183 1.183 24 H -0.227 1.227 25 H -0.219 1.219 26 N -0.145 5.145 27 C -0.020 4.020 28 C -0.168 4.168 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.252 0.748 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.146 0.854 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.083 21.080 -20.892 29.959 hybrid contribution -1.104 -0.412 0.733 1.388 sum -5.187 20.668 -20.160 29.334 Atomic orbital electron populations 1.22425 0.89121 1.05392 1.05813 1.21322 0.98078 0.93271 0.79288 1.22211 1.02352 0.92147 1.05042 1.92919 1.90544 1.82848 1.52071 1.21219 0.78695 0.82904 0.88826 1.90744 1.43119 1.66628 1.42476 1.46119 1.60206 1.07084 1.22503 1.20348 0.92443 0.94055 0.88988 0.89445 1.21596 0.95038 1.02512 0.96408 1.20590 1.04083 0.82419 0.98932 1.25331 0.81425 0.99725 1.02746 1.74093 1.27535 0.95364 1.20762 1.74461 1.02749 1.20514 1.19955 1.24948 0.95892 0.84716 1.03236 1.19089 0.90516 0.92589 0.86486 1.42455 1.43877 1.51061 1.00630 1.19680 1.10565 1.15981 0.91152 0.89236 1.25655 1.02356 1.02277 0.96318 1.69858 1.44558 1.46217 1.01508 0.84998 0.78112 0.77879 0.78246 1.18276 1.22680 1.21856 1.46226 1.10003 1.06722 1.51508 1.22678 0.83673 0.96062 0.99574 1.21851 1.02928 0.96718 0.95259 0.89361 0.88558 0.89795 0.92177 0.88730 0.89608 0.74806 0.91800 0.89778 0.87100 0.87661 0.91233 0.93105 0.79826 0.93997 0.86653 0.87056 0.85415 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 8.91 71.98 0.64 -0.28 16 2 C 0.10 1.12 1.54 -11.54 -0.02 1.10 16 3 C -0.16 -1.68 8.28 71.98 0.60 -1.08 16 4 F -0.20 -2.79 16.73 44.97 0.75 -2.03 16 5 C 0.50 7.55 6.45 87.66 0.57 8.12 16 6 O -0.55 -12.12 15.30 -3.04 -0.05 -12.16 16 7 N -0.71 -8.17 4.92 -449.04 -2.21 -10.37 16 8 C 0.15 2.02 1.91 43.63 0.08 2.10 16 9 H 0.09 1.34 7.01 -2.39 -0.02 1.33 16 10 C -0.12 -2.00 5.12 30.16 0.15 -1.84 16 11 C -0.02 -0.42 6.02 30.45 0.18 -0.23 16 12 C 0.18 5.40 7.03 138.83 0.98 6.38 16 13 N -0.34 -13.47 12.23 -50.01 -0.61 -14.08 16 14 N -0.34 -14.78 12.25 -50.44 -0.62 -15.40 16 15 C 0.18 6.91 7.45 138.12 1.03 7.94 16 16 C 0.24 9.48 6.48 85.63 0.55 10.03 16 17 N -0.74 -36.72 5.59 -347.18 -1.94 -38.67 16 18 C -0.24 -12.91 9.99 84.03 0.84 -12.07 16 19 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 21 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 22 Si 0.98 44.69 29.55 68.60 2.03 46.72 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 N -0.45 -13.41 2.72 -500.60 -1.36 -14.77 16 27 C 0.10 2.01 6.47 86.40 0.56 2.56 16 28 C -0.13 -1.62 5.07 30.12 0.15 -1.47 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.90 7.99 -2.39 -0.02 0.88 16 35 H 0.42 3.05 8.54 -92.71 -0.79 2.26 16 36 H 0.06 1.22 7.91 -2.39 -0.02 1.21 16 37 H 0.08 1.50 7.54 -2.39 -0.02 1.48 16 38 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.11 1.87 7.89 -2.39 -0.02 1.85 16 40 H 0.07 2.29 7.46 -2.39 -0.02 2.28 16 41 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.37 20.70 7.66 -92.70 -0.71 19.99 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.12 2.40 7.16 -2.39 -0.02 2.38 16 45 H 0.11 1.94 7.87 -2.39 -0.02 1.92 16 46 H 0.13 0.89 8.12 -2.39 -0.02 0.87 16 47 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 Total: -1.00 -77.98 386.25 2.57 -75.42 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.49 Total: 26.64 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.78 Total: 17.60 kcal Atomic # 7 Polarization: -145.73 SS G_CDS: -6.46 Total: -152.18 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.05 Total: -12.16 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.75 Total: -2.03 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -77.98 2.57 -75.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127917304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.230 kcal (2) G-P(sol) polarization free energy of solvation -77.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds