Wall clock time and date at job start Tue Mar 31 2020 23:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46700 * 2 1 4 4 H 1.09002 * 109.46903 * 55.00334 * 3 2 1 5 5 F 1.39898 * 109.47559 * 295.00032 * 3 2 1 6 6 C 1.50700 * 109.47100 * 174.99972 * 3 2 1 7 7 O 1.21279 * 119.99749 * 44.99952 * 6 3 2 8 8 N 1.34771 * 120.00286 * 225.00050 * 6 3 2 9 9 C 1.46503 * 120.00323 * 179.97438 * 8 6 3 10 10 H 1.09003 * 107.87249 * 38.45434 * 9 8 6 11 11 C 1.50960 * 107.99742 * 281.90875 * 9 8 6 12 12 C 1.53673 * 110.95074 * 165.71599 * 11 9 8 13 13 C 1.51886 * 106.89997 * 79.10799 * 12 11 9 14 14 N 1.29895 * 127.80800 * 114.87427 * 13 12 11 15 15 N 1.29041 * 109.21632 * 180.27671 * 14 13 12 16 16 C 1.30963 * 109.70926 * 359.92971 * 15 14 13 17 17 C 1.50699 * 126.61259 * 179.91011 * 16 15 14 18 18 N 1.46496 * 109.47459 * 89.96621 * 17 16 15 19 19 C 1.36939 * 119.99991 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00514 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99598 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00397 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46826 * 89.99620 * 23 21 19 25 25 H 1.48499 * 109.47345 * 209.99859 * 23 21 19 26 26 H 1.48499 * 109.47013 * 330.00003 * 23 21 19 27 27 N 1.34597 * 124.56749 * 294.92720 * 13 12 11 28 28 C 1.47499 * 125.03784 * 359.45192 * 27 13 12 29 29 C 1.50863 * 108.02927 * 155.00206 * 9 8 6 30 30 H 1.08993 * 109.47024 * 59.99940 * 1 2 3 31 31 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47012 * 299.99640 * 1 2 3 33 33 H 1.09001 * 109.47012 * 240.00360 * 2 1 3 34 34 H 1.08993 * 109.47024 * 120.00060 * 2 1 3 35 35 H 0.97004 * 120.00335 * 0.02562 * 8 6 3 36 36 H 1.08998 * 109.17591 * 45.34161 * 11 9 8 37 37 H 1.09002 * 109.19305 * 286.09914 * 11 9 8 38 38 H 1.09007 * 109.96351 * 319.76150 * 12 11 9 39 39 H 1.09000 * 109.96947 * 198.46250 * 12 11 9 40 40 H 1.08997 * 109.47268 * 209.97242 * 17 16 15 41 41 H 1.09008 * 109.46801 * 329.96877 * 17 16 15 42 42 H 0.97002 * 119.99999 * 0.02562 * 18 17 16 43 43 H 0.96999 * 120.00390 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.92863 * 185.37522 * 28 27 13 45 45 H 1.08998 * 109.92887 * 306.57839 * 28 27 13 46 46 H 1.08997 * 109.14639 * 73.96973 * 29 9 8 47 47 H 1.09006 * 109.14761 * 314.81406 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4444 0.1238 7 8 4.2063 0.6812 -0.5446 8 7 4.1466 2.2942 0.9774 9 6 5.6066 2.2956 1.0982 10 1 6.0248 2.1476 0.1025 11 6 6.0051 1.1167 1.9527 12 6 7.5124 0.8400 1.8387 13 6 8.2153 1.8495 2.7296 14 7 8.9108 1.6171 3.8018 15 7 9.3409 2.7359 4.2799 16 6 8.9334 3.7249 3.5242 17 6 9.2152 5.1905 3.7328 18 7 10.4524 5.5538 3.0374 19 6 10.9120 6.8428 3.0860 20 1 10.3627 7.5916 3.6372 21 6 12.0840 7.1871 2.4266 22 7 12.7533 6.2747 1.7543 23 14 12.7106 8.9456 2.4922 24 1 13.6136 9.1060 3.6602 25 1 13.4555 9.2526 1.2448 26 1 11.5609 9.8762 2.6240 27 7 8.2147 3.1798 2.5246 28 6 7.5448 3.8634 1.4023 29 6 6.0334 3.6579 1.5861 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.6151 2.9044 1.5124 36 1 5.4535 0.2352 1.6262 37 1 5.7575 1.3281 2.9930 38 1 7.8368 0.9657 0.8057 39 1 7.7318 -0.1723 2.1781 40 1 8.3887 5.7796 3.3355 41 1 9.3251 5.3913 4.7986 42 1 10.9460 4.8812 2.5425 43 1 13.5724 6.5151 1.2939 44 1 7.7803 4.9274 1.4216 45 1 7.8668 3.4277 0.4565 46 1 5.7856 3.7528 2.6432 47 1 5.4977 4.4230 1.0241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128020900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:57 Heat of formation + Delta-G solvation = -1.407665 kcal Electronic energy + Delta-G solvation = -29652.934216 eV Core-core repulsion = 25400.628930 eV Total energy + Delta-G solvation = -4252.305286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.36226 -43.04407 -40.43893 -37.74941 -35.24299 -34.70208 -34.51164 -33.52954 -31.54395 -31.41244 -29.48288 -28.33153 -26.31222 -25.71473 -24.31836 -22.89907 -22.76090 -21.37991 -21.07788 -20.63784 -20.00533 -18.30303 -17.47569 -17.45746 -17.03664 -16.61843 -15.98140 -15.72941 -15.31045 -15.08275 -14.91890 -14.78913 -14.40559 -14.16361 -14.05381 -13.67499 -13.40705 -13.32451 -12.99140 -12.87313 -12.80027 -12.59384 -12.56734 -12.36145 -11.98959 -11.80555 -11.64448 -11.62698 -11.42908 -11.22900 -11.08851 -10.94386 -10.88631 -10.28499 -10.19612 -9.97307 -9.95530 -9.85488 -9.67740 -9.02304 -8.72067 -7.09681 -5.86013 -3.18534 1.91896 2.10975 2.37382 2.67062 3.19867 3.38640 3.43768 3.45410 3.83246 3.92082 4.04200 4.07066 4.28474 4.32741 4.37762 4.47122 4.51595 4.70305 4.77535 4.83203 4.88290 4.88743 5.01944 5.04193 5.10121 5.24036 5.27989 5.36435 5.38395 5.48531 5.54005 5.59907 5.63741 5.67113 5.73689 5.78321 5.89682 5.93369 6.15118 6.26353 6.50192 6.55456 6.83113 7.12376 7.55185 7.58729 8.28995 9.10170 9.41637 9.92202 10.28331 11.35952 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.002265 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.817890 B =12358.610395 C =13271.764917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.100 0.900 5 F -0.189 7.189 6 C 0.492 3.508 7 O -0.514 6.514 8 N -0.721 5.721 9 C 0.143 3.857 10 H 0.088 0.912 11 C -0.126 4.126 12 C -0.023 4.023 13 C 0.158 3.842 14 N -0.296 5.296 15 N -0.293 5.293 16 C 0.194 3.806 17 C 0.236 3.764 18 N -0.724 5.724 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.928 5.928 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 N -0.463 5.463 28 C 0.111 3.889 29 C -0.143 4.143 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.893 -10.393 -3.824 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.117 0.883 5 F -0.170 7.170 6 C 0.275 3.725 7 O -0.388 6.388 8 N -0.373 5.373 9 C 0.039 3.961 10 H 0.106 0.894 11 C -0.165 4.165 12 C -0.063 4.063 13 C -0.110 4.110 14 N -0.135 5.135 15 N -0.133 5.133 16 C -0.074 4.074 17 C 0.107 3.893 18 N -0.370 5.370 19 C -0.379 4.379 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.575 5.575 23 Si 0.742 3.258 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.154 5.154 28 C -0.013 4.013 29 C -0.182 4.182 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.237 0.763 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.714 -11.486 -3.189 28.343 hybrid contribution -0.204 1.823 -0.975 2.077 sum -25.918 -9.664 -4.164 27.973 Atomic orbital electron populations 1.21780 0.94012 1.02809 1.02546 1.22003 0.97411 0.93370 1.05178 1.21645 0.91819 0.96496 0.85660 0.88255 1.92899 1.92006 1.83863 1.48205 1.21009 0.90435 0.80949 0.80076 1.90761 1.65964 1.38649 1.43472 1.46337 1.08138 1.39685 1.43148 1.20472 0.79446 0.94766 1.01411 0.89422 1.21692 0.95641 0.98389 1.00777 1.20350 0.92142 0.96515 0.97291 1.24610 1.03306 0.83938 0.99145 1.74198 1.11826 1.19464 1.08051 1.74581 1.20323 0.94007 1.24422 1.25258 0.95251 0.99532 0.87339 1.19056 0.91245 0.80833 0.98176 1.42295 1.23958 1.09728 1.61053 1.19172 1.05382 0.85925 1.27385 0.90729 1.24797 0.97649 0.97986 1.00078 1.69679 1.18105 1.32554 1.37173 0.86133 0.78687 0.83856 0.77092 1.21485 1.21728 1.20630 1.46043 1.40037 1.07300 1.21998 1.22293 0.90212 1.00509 0.88256 1.21931 0.95921 0.96563 1.03767 0.91863 0.91579 0.92304 0.89317 0.89703 0.76257 0.89727 0.91052 0.89348 0.87697 0.94592 0.92568 0.77922 0.93286 0.86344 0.88379 0.90039 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.83 37.16 0.37 -0.29 16 2 C -0.14 -0.78 5.41 -26.73 -0.14 -0.93 16 3 C 0.08 0.50 3.77 -27.88 -0.11 0.40 16 4 H 0.10 0.28 8.00 -51.93 -0.42 -0.14 16 5 F -0.19 -1.63 16.75 2.25 0.04 -1.59 16 6 C 0.49 4.04 6.77 -10.99 -0.07 3.96 16 7 O -0.51 -6.20 15.72 5.56 0.09 -6.11 16 8 N -0.72 -4.48 4.99 -55.86 -0.28 -4.75 16 9 C 0.14 1.11 1.90 -70.03 -0.13 0.98 16 10 H 0.09 0.80 7.13 -51.93 -0.37 0.43 16 11 C -0.13 -1.10 5.09 -27.41 -0.14 -1.24 16 12 C -0.02 -0.24 6.02 -26.95 -0.16 -0.40 16 13 C 0.16 2.41 7.03 -155.75 -1.09 1.31 16 14 N -0.30 -5.70 12.23 32.84 0.40 -5.30 16 15 N -0.29 -6.23 12.24 32.71 0.40 -5.83 16 16 C 0.19 3.66 7.45 -155.39 -1.16 2.50 16 17 C 0.24 4.68 6.48 -5.20 -0.03 4.65 16 18 N -0.72 -18.01 5.59 -61.09 -0.34 -18.35 16 19 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 23 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 N -0.46 -6.94 2.72 -109.59 -0.30 -7.24 16 28 C 0.11 1.20 6.47 -3.17 -0.02 1.18 16 29 C -0.14 -1.08 5.05 -27.48 -0.14 -1.22 16 30 H 0.06 0.31 7.93 -51.93 -0.41 -0.10 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 1.38 8.43 -40.82 -0.34 1.04 16 36 H 0.08 0.75 7.23 -51.93 -0.38 0.37 16 37 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 38 H 0.09 0.87 7.89 -51.93 -0.41 0.46 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.63 7.46 -51.93 -0.39 0.25 16 41 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.39 10.57 7.66 -40.82 -0.31 10.26 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 1.37 7.16 -51.93 -0.37 0.99 16 45 H 0.10 0.98 7.87 -51.93 -0.41 0.57 16 46 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 47 H 0.10 0.55 8.13 -51.93 -0.42 0.12 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -35.91 386.72 -8.68 -44.59 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.14 Total: 5.26 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -3.08 Total: 3.75 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: 0.61 Total: -68.52 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: 0.09 Total: -6.11 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.91 -8.68 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128020900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.187 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds