Wall clock time and date at job start Tue Mar 31 2020 23:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46700 * 2 1 4 4 H 1.09002 * 109.46903 * 55.00334 * 3 2 1 5 5 F 1.39898 * 109.47559 * 295.00032 * 3 2 1 6 6 C 1.50700 * 109.47100 * 174.99972 * 3 2 1 7 7 O 1.21279 * 119.99749 * 44.99952 * 6 3 2 8 8 N 1.34771 * 120.00286 * 225.00050 * 6 3 2 9 9 C 1.46503 * 120.00323 * 179.97438 * 8 6 3 10 10 H 1.09003 * 107.87249 * 38.45434 * 9 8 6 11 11 C 1.50960 * 107.99742 * 281.90875 * 9 8 6 12 12 C 1.53673 * 110.95074 * 165.71599 * 11 9 8 13 13 C 1.51886 * 106.89997 * 79.10799 * 12 11 9 14 14 N 1.29895 * 127.80800 * 114.87427 * 13 12 11 15 15 N 1.29041 * 109.21632 * 180.27671 * 14 13 12 16 16 C 1.30963 * 109.70926 * 359.92971 * 15 14 13 17 17 C 1.50699 * 126.61259 * 179.91011 * 16 15 14 18 18 N 1.46496 * 109.47459 * 89.96621 * 17 16 15 19 19 C 1.36939 * 119.99991 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00514 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99598 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00397 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46826 * 89.99620 * 23 21 19 25 25 H 1.48499 * 109.47345 * 209.99859 * 23 21 19 26 26 H 1.48499 * 109.47013 * 330.00003 * 23 21 19 27 27 N 1.34597 * 124.56749 * 294.92720 * 13 12 11 28 28 C 1.47499 * 125.03784 * 359.45192 * 27 13 12 29 29 C 1.50863 * 108.02927 * 155.00206 * 9 8 6 30 30 H 1.08993 * 109.47024 * 59.99940 * 1 2 3 31 31 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47012 * 299.99640 * 1 2 3 33 33 H 1.09001 * 109.47012 * 240.00360 * 2 1 3 34 34 H 1.08993 * 109.47024 * 120.00060 * 2 1 3 35 35 H 0.97004 * 120.00335 * 0.02562 * 8 6 3 36 36 H 1.08998 * 109.17591 * 45.34161 * 11 9 8 37 37 H 1.09002 * 109.19305 * 286.09914 * 11 9 8 38 38 H 1.09007 * 109.96351 * 319.76150 * 12 11 9 39 39 H 1.09000 * 109.96947 * 198.46250 * 12 11 9 40 40 H 1.08997 * 109.47268 * 209.97242 * 17 16 15 41 41 H 1.09008 * 109.46801 * 329.96877 * 17 16 15 42 42 H 0.97002 * 119.99999 * 0.02562 * 18 17 16 43 43 H 0.96999 * 120.00390 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.92863 * 185.37522 * 28 27 13 45 45 H 1.08998 * 109.92887 * 306.57839 * 28 27 13 46 46 H 1.08997 * 109.14639 * 73.96973 * 29 9 8 47 47 H 1.09006 * 109.14761 * 314.81406 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4444 0.1238 7 8 4.2063 0.6812 -0.5446 8 7 4.1466 2.2942 0.9774 9 6 5.6066 2.2956 1.0982 10 1 6.0248 2.1476 0.1025 11 6 6.0051 1.1167 1.9527 12 6 7.5124 0.8400 1.8387 13 6 8.2153 1.8495 2.7296 14 7 8.9108 1.6171 3.8018 15 7 9.3409 2.7359 4.2799 16 6 8.9334 3.7249 3.5242 17 6 9.2152 5.1905 3.7328 18 7 10.4524 5.5538 3.0374 19 6 10.9120 6.8428 3.0860 20 1 10.3627 7.5916 3.6372 21 6 12.0840 7.1871 2.4266 22 7 12.7533 6.2747 1.7543 23 14 12.7106 8.9456 2.4922 24 1 13.6136 9.1060 3.6602 25 1 13.4555 9.2526 1.2448 26 1 11.5609 9.8762 2.6240 27 7 8.2147 3.1798 2.5246 28 6 7.5448 3.8634 1.4023 29 6 6.0334 3.6579 1.5861 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.6151 2.9044 1.5124 36 1 5.4535 0.2352 1.6262 37 1 5.7575 1.3281 2.9930 38 1 7.8368 0.9657 0.8057 39 1 7.7318 -0.1723 2.1781 40 1 8.3887 5.7796 3.3355 41 1 9.3251 5.3913 4.7986 42 1 10.9460 4.8812 2.5425 43 1 13.5724 6.5151 1.2939 44 1 7.7803 4.9274 1.4216 45 1 7.8668 3.4277 0.4565 46 1 5.7856 3.7528 2.6432 47 1 5.4977 4.4230 1.0241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128020900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:56 Heat of formation + Delta-G solvation = -25.867031 kcal Electronic energy + Delta-G solvation = -29653.994854 eV Core-core repulsion = 25400.628930 eV Total energy + Delta-G solvation = -4253.365924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.92188 -44.35275 -41.11133 -38.56668 -36.92741 -35.78944 -34.97225 -34.62556 -33.28497 -32.31650 -30.92600 -28.94339 -27.80130 -26.68100 -25.42432 -24.73214 -23.25191 -22.38094 -21.72288 -21.66873 -21.12214 -19.41656 -18.86273 -18.25091 -17.94020 -17.37787 -16.98984 -16.60834 -16.50805 -16.13222 -15.95318 -15.75756 -15.65550 -15.11718 -14.99331 -14.76856 -14.50933 -14.34949 -14.04114 -13.89092 -13.88509 -13.46926 -13.26830 -13.17536 -12.93650 -12.87223 -12.78885 -12.68707 -12.52561 -12.20465 -12.11171 -12.02251 -11.92807 -11.89911 -11.82353 -11.36999 -11.20882 -11.01693 -10.81550 -10.33028 -10.11860 -9.12066 -7.97334 -5.30222 0.80625 1.30278 1.49110 1.51886 1.52385 1.60162 1.76583 1.83175 2.56320 3.13894 3.31799 3.35002 3.37652 3.43930 3.49828 3.65323 3.69653 3.76357 3.89793 3.93388 3.97707 4.05960 4.17594 4.25463 4.29238 4.40708 4.46045 4.51803 4.57017 4.64278 4.74444 4.80822 4.85873 4.95374 5.00350 5.04491 5.06218 5.07563 5.15153 5.17970 5.28980 5.35503 5.48429 5.91808 6.19550 6.32916 7.00818 7.27531 7.71884 7.92666 8.19578 9.25904 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.002265 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.817890 B =12358.610395 C =13271.764917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.083 3.917 4 H 0.141 0.859 5 F -0.205 7.205 6 C 0.490 3.510 7 O -0.558 6.558 8 N -0.705 5.705 9 C 0.145 3.855 10 H 0.078 0.922 11 C -0.115 4.115 12 C -0.022 4.022 13 C 0.178 3.822 14 N -0.338 5.338 15 N -0.336 5.336 16 C 0.182 3.818 17 C 0.241 3.759 18 N -0.737 5.737 19 C -0.244 4.244 20 H 0.090 0.910 21 C -0.074 4.074 22 N -0.971 5.971 23 Si 0.980 3.020 24 H -0.291 1.291 25 H -0.298 1.298 26 H -0.260 1.260 27 N -0.455 5.455 28 C 0.101 3.899 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.420 0.580 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.370 0.630 43 H 0.251 0.749 44 H 0.114 0.886 45 H 0.108 0.892 46 H 0.083 0.917 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.705 -9.297 -3.809 31.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.158 0.842 5 F -0.185 7.185 6 C 0.275 3.725 7 O -0.435 6.435 8 N -0.357 5.357 9 C 0.041 3.959 10 H 0.097 0.903 11 C -0.154 4.154 12 C -0.062 4.062 13 C -0.092 4.092 14 N -0.177 5.177 15 N -0.176 5.176 16 C -0.088 4.088 17 C 0.113 3.887 18 N -0.381 5.381 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.266 4.266 22 N -0.621 5.621 23 Si 0.808 3.192 24 H -0.218 1.218 25 H -0.225 1.225 26 H -0.184 1.184 27 N -0.145 5.145 28 C -0.021 4.021 29 C -0.167 4.167 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.258 0.742 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.201 0.799 43 H 0.060 0.940 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.609 -10.350 -3.137 30.585 hybrid contribution 0.589 1.391 -0.974 1.797 sum -28.021 -8.959 -4.111 29.704 Atomic orbital electron populations 1.21771 0.92905 1.03272 1.02920 1.22004 0.98307 0.93085 1.04577 1.21873 0.90341 0.97223 0.86186 0.84164 1.92868 1.91992 1.84162 1.49524 1.21432 0.91309 0.80312 0.79473 1.90747 1.67057 1.40487 1.45247 1.46159 1.07532 1.39356 1.42685 1.20333 0.80426 0.94526 1.00617 0.90345 1.21586 0.93903 0.99085 1.00836 1.20598 0.93097 0.95584 0.96903 1.25341 1.01153 0.84686 0.97986 1.74101 1.13993 1.19310 1.10305 1.74460 1.21732 0.95109 1.26338 1.24937 0.96429 0.98792 0.88616 1.19093 0.90118 0.82079 0.97413 1.42449 1.25444 1.08815 1.61342 1.19649 1.05039 0.86950 1.25880 0.89210 1.25664 0.98388 1.01961 1.00631 1.69854 1.18587 1.34672 1.38980 0.85054 0.78317 0.79549 0.76258 1.21846 1.22490 1.18430 1.46223 1.39129 1.07246 1.21866 1.22657 0.92197 0.99993 0.87224 1.21836 0.93407 0.97108 1.04377 0.92729 0.91159 0.90628 0.91608 0.88710 0.74220 0.89355 0.91258 0.88067 0.87023 0.91256 0.93047 0.79850 0.94026 0.86731 0.87373 0.89826 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.83 71.98 0.71 -0.27 16 2 C -0.14 -1.34 5.41 30.60 0.17 -1.17 16 3 C 0.08 0.79 3.77 29.85 0.11 0.91 16 4 H 0.14 0.19 8.00 -2.39 -0.02 0.17 16 5 F -0.20 -3.18 16.75 44.97 0.75 -2.43 16 6 C 0.49 6.96 6.77 87.66 0.59 7.56 16 7 O -0.56 -12.85 15.72 -3.03 -0.05 -12.90 16 8 N -0.70 -6.49 4.99 -449.04 -2.24 -8.73 16 9 C 0.15 1.87 1.90 43.63 0.08 1.96 16 10 H 0.08 1.25 7.13 -2.39 -0.02 1.23 16 11 C -0.11 -1.77 5.09 30.16 0.15 -1.61 16 12 C -0.02 -0.43 6.02 30.45 0.18 -0.25 16 13 C 0.18 5.29 7.03 138.83 0.98 6.27 16 14 N -0.34 -13.19 12.23 -50.00 -0.61 -13.80 16 15 N -0.34 -14.55 12.24 -50.44 -0.62 -15.17 16 16 C 0.18 6.83 7.45 138.12 1.03 7.86 16 17 C 0.24 9.39 6.48 85.63 0.56 9.94 16 18 N -0.74 -36.69 5.59 -347.18 -1.94 -38.63 16 19 C -0.24 -12.99 9.99 84.03 0.84 -12.15 16 20 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 23 Si 0.98 44.77 29.55 68.60 2.03 46.79 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 27 N -0.45 -13.19 2.72 -500.65 -1.36 -14.55 16 28 C 0.10 1.99 6.47 86.40 0.56 2.55 16 29 C -0.13 -1.52 5.05 30.11 0.15 -1.37 16 30 H 0.05 0.45 7.93 -2.39 -0.02 0.43 16 31 H 0.07 0.39 8.14 -2.38 -0.02 0.38 16 32 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.07 0.93 8.05 -2.39 -0.02 0.91 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.42 1.12 8.43 -92.71 -0.78 0.34 16 36 H 0.09 1.37 7.23 -2.39 -0.02 1.35 16 37 H 0.07 1.13 7.91 -2.39 -0.02 1.11 16 38 H 0.10 1.81 7.89 -2.38 -0.02 1.79 16 39 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.27 7.46 -2.39 -0.02 2.25 16 41 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.37 20.68 7.66 -92.71 -0.71 19.97 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.11 2.40 7.16 -2.39 -0.02 2.38 16 45 H 0.11 1.94 7.87 -2.39 -0.02 1.92 16 46 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 47 H 0.13 0.86 8.13 -2.38 -0.02 0.84 16 Total: -1.00 -80.46 386.72 2.33 -78.13 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.48 Total: 23.73 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.58 Total: 16.53 kcal Atomic # 7 Polarization: -143.36 SS G_CDS: -6.49 Total: -149.85 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.05 Total: -12.90 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.75 Total: -2.43 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -80.46 2.33 -78.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128020900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.259 kcal (2) G-P(sol) polarization free energy of solvation -80.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds