Wall clock time and date at job start Tue Mar 31 2020 23:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47407 * 2 1 4 4 C 1.53003 * 109.47044 * 120.00383 * 2 1 3 5 5 C 1.50697 * 109.47256 * 64.99824 * 4 2 1 6 6 O 1.21286 * 120.00060 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99975 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99887 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47322 * 180.02562 * 8 7 5 10 10 N 1.30838 * 125.95710 * 275.30408 * 9 8 7 11 11 C 1.33239 * 109.82337 * 180.11691 * 10 9 8 12 12 C 1.50702 * 125.52232 * 179.85363 * 11 10 9 13 13 H 1.08994 * 110.00256 * 343.62385 * 12 11 10 14 14 C 1.54327 * 109.88237 * 104.72510 * 12 11 10 15 15 C 1.55156 * 102.94181 * 141.60964 * 14 12 11 16 16 H 1.09000 * 110.99867 * 206.38039 * 15 14 12 17 17 F 1.39896 * 111.00662 * 82.57142 * 15 14 12 18 18 C 1.54908 * 101.58197 * 324.49449 * 15 14 12 19 19 N 1.47031 * 109.88194 * 222.53015 * 12 11 10 20 20 C 1.36934 * 125.64541 * 61.59557 * 19 12 11 21 21 H 1.07997 * 120.00156 * 0.02562 * 20 19 12 22 22 C 1.38816 * 119.99339 * 179.97438 * 20 19 12 23 23 N 1.31619 * 120.00310 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99553 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47377 * 60.00572 * 24 22 20 26 26 H 1.48505 * 109.47153 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47370 * 300.00335 * 24 22 20 28 28 N 1.30707 * 108.95029 * 359.59669 * 11 10 9 29 29 N 1.34423 * 125.96332 * 94.97068 * 9 8 7 30 30 H 0.96997 * 126.82232 * 0.07562 * 29 9 8 31 31 H 1.08998 * 109.47053 * 299.99550 * 1 2 3 32 32 H 1.09001 * 109.47179 * 59.99639 * 1 2 3 33 33 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46660 * 239.99812 * 2 1 3 35 35 H 1.09004 * 109.47481 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47246 * 300.00320 * 3 2 1 37 37 H 1.09004 * 109.46922 * 60.00496 * 3 2 1 38 38 H 1.08998 * 109.47266 * 304.99675 * 4 2 1 39 39 H 1.09001 * 109.46688 * 184.99516 * 4 2 1 40 40 H 0.97001 * 120.00171 * 359.97438 * 7 5 4 41 41 H 1.08995 * 109.47660 * 60.00007 * 8 7 5 42 42 H 1.09006 * 109.47295 * 299.99788 * 8 7 5 43 43 H 1.09001 * 110.71763 * 259.97298 * 14 12 11 44 44 H 1.08997 * 110.72099 * 23.06335 * 14 12 11 45 45 H 1.09000 * 110.36459 * 155.84880 * 18 15 14 46 46 H 1.09001 * 110.36573 * 278.06223 * 18 15 14 47 47 H 0.97000 * 119.99728 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1734 1.1888 6 8 1.0116 -2.5904 0.2398 7 7 1.9853 -3.0088 2.1889 8 6 1.5981 -4.4205 2.1299 9 6 2.1003 -5.1310 3.3604 10 7 3.2966 -5.6358 3.5216 11 6 3.3936 -6.1916 4.7286 12 6 4.6163 -6.8782 5.2808 13 1 5.3078 -7.1152 4.4723 14 6 5.3096 -5.9649 6.3136 15 6 5.7747 -6.9649 7.4049 16 1 5.8560 -6.4746 8.3750 17 9 6.9851 -7.5690 7.0485 18 6 4.6170 -7.9942 7.3973 19 7 4.2245 -8.1102 5.9810 20 6 3.5979 -9.1867 5.4120 21 1 3.3509 -9.1742 4.3608 22 6 3.2812 -10.2944 6.1864 23 7 3.5827 -10.3098 7.4675 24 14 2.4271 -11.7632 5.4102 25 1 3.2787 -12.3151 4.3261 26 1 2.2009 -12.8067 6.4423 27 1 1.1221 -11.3353 4.8452 28 7 2.2582 -6.0400 5.3582 29 7 1.3995 -5.3512 4.4861 30 1 0.4827 -5.0873 4.6611 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8901 38 1 1.6054 -0.2619 2.1370 39 1 3.1263 -0.6445 1.2950 40 1 2.4898 -2.6756 2.9474 41 1 2.0327 -4.8797 1.2420 42 1 0.5118 -4.4978 2.0842 43 1 6.1641 -5.4567 5.8668 44 1 4.6045 -5.2422 6.7242 45 1 4.9624 -8.9564 7.7752 46 1 3.7817 -7.6301 7.9956 47 1 3.3610 -11.0837 8.0086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131142357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:57 Heat of formation + Delta-G solvation = 15.594313 kcal Electronic energy + Delta-G solvation = -29362.438704 eV Core-core repulsion = 25110.870679 eV Total energy + Delta-G solvation = -4251.568025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.75850 -41.86968 -40.11430 -37.16685 -36.18481 -35.04723 -32.79591 -32.10017 -31.40860 -29.32641 -29.04088 -27.76291 -27.40307 -26.32523 -24.69563 -22.32502 -21.38956 -20.85728 -20.38363 -20.13531 -19.29970 -18.07724 -17.18438 -16.97659 -16.46979 -16.01714 -15.77624 -15.25467 -15.12277 -14.76172 -14.40733 -14.16035 -14.11383 -13.98582 -13.68374 -13.49807 -13.39009 -13.06042 -12.65982 -12.50258 -12.36908 -12.20479 -11.70233 -11.63109 -11.56354 -11.44968 -11.20022 -11.05500 -11.01381 -10.89297 -10.72719 -10.39721 -10.13644 -10.11070 -9.96016 -9.71556 -9.66361 -9.52092 -9.42682 -9.16050 -8.73828 -7.01623 -5.73611 -3.15893 1.70495 2.35401 2.73368 2.98278 3.36318 3.38964 3.42507 3.44276 3.98890 4.34872 4.41889 4.46837 4.56313 4.76723 4.87140 4.95416 5.09912 5.13590 5.21966 5.22147 5.29849 5.34956 5.36367 5.42708 5.47603 5.53199 5.57469 5.64387 5.65616 5.77534 5.81385 5.94296 6.04236 6.15097 6.16771 6.19087 6.34641 6.59703 6.79809 6.83069 7.12294 7.25123 7.32897 7.51624 7.73087 7.90455 8.23437 8.47283 9.11235 9.71565 10.31175 11.30951 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.002417 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.203689 B =11582.122788 C =12854.159259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.137 4.137 5 C 0.516 3.484 6 O -0.535 6.535 7 N -0.726 5.726 8 C 0.207 3.793 9 C 0.238 3.762 10 N -0.520 5.520 11 C 0.230 3.770 12 C 0.243 3.757 13 H 0.072 0.928 14 C -0.140 4.140 15 C 0.058 3.942 16 H 0.084 0.916 17 F -0.210 7.210 18 C 0.131 3.869 19 N -0.574 5.574 20 C -0.220 4.220 21 H 0.075 0.925 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.917 3.083 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.287 1.287 28 N -0.269 5.269 29 N -0.484 5.484 30 H 0.434 0.566 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.405 0.595 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.034 0.966 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 21.692 -7.776 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.303 3.697 6 O -0.411 6.411 7 N -0.380 5.380 8 C 0.081 3.919 9 C -0.041 4.041 10 N -0.249 5.249 11 C -0.055 4.055 12 C 0.130 3.870 13 H 0.090 0.910 14 C -0.180 4.180 15 C 0.020 3.980 16 H 0.102 0.898 17 F -0.191 7.191 18 C 0.006 3.994 19 N -0.296 5.296 20 C -0.348 4.348 21 H 0.093 0.907 22 C -0.199 4.199 23 N -0.567 5.567 24 Si 0.747 3.253 25 H -0.209 1.209 26 H -0.214 1.214 27 H -0.214 1.214 28 N -0.097 5.097 29 N -0.203 5.203 30 H 0.278 0.722 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.240 0.760 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.140 0.860 46 H 0.052 0.948 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.386 20.806 -7.892 22.508 hybrid contribution -1.109 -0.388 -0.029 1.175 sum -4.495 20.418 -7.921 22.357 Atomic orbital electron populations 1.21969 0.94731 1.03386 1.01052 1.20871 0.96638 0.95369 0.97140 1.21868 1.00978 0.95745 1.02001 1.21791 1.03211 0.91549 1.01136 1.20758 0.78922 0.88342 0.81641 1.90696 1.39610 1.77989 1.32829 1.46013 1.58517 1.08786 1.24675 1.19502 0.99882 0.80054 0.92436 1.23940 0.89529 0.99755 0.90882 1.70387 1.17736 1.16928 1.19893 1.25989 0.96502 0.95195 0.87817 1.19467 0.87267 0.85961 0.94270 0.91016 1.23129 1.00470 0.97517 0.96866 1.23067 0.82818 0.95337 0.96759 0.89806 1.92761 1.47197 1.85461 1.93682 1.22611 0.91512 0.99187 0.86056 1.44473 1.68560 1.11499 1.05103 1.18916 1.30550 0.91865 0.93472 0.90688 1.24756 1.00983 0.98481 0.95722 1.69719 1.51859 1.30116 1.04966 0.86121 0.79237 0.81954 0.77975 1.20910 1.21421 1.21389 1.78295 1.02073 1.14801 1.14489 1.48265 1.15355 1.44946 1.11710 0.72165 0.93396 0.92926 0.90699 0.90283 0.92584 0.92359 0.92650 0.88816 0.88595 0.76049 0.87826 0.89370 0.90262 0.90228 0.86029 0.94805 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.93 37.16 0.33 -0.86 16 2 C -0.08 -0.58 2.57 -90.62 -0.23 -0.81 16 3 C -0.15 -0.80 9.19 37.15 0.34 -0.46 16 4 C -0.14 -0.87 5.17 -27.88 -0.14 -1.02 16 5 C 0.52 4.84 7.55 -10.99 -0.08 4.75 16 6 O -0.53 -6.81 13.97 5.55 0.08 -6.73 16 7 N -0.73 -6.39 5.55 -61.47 -0.34 -6.73 16 8 C 0.21 2.20 6.30 -5.19 -0.03 2.17 16 9 C 0.24 3.37 7.60 -155.69 -1.18 2.18 16 10 N -0.52 -9.28 11.19 -8.16 -0.09 -9.37 16 11 C 0.23 4.63 6.56 -156.86 -1.03 3.60 16 12 C 0.24 5.14 3.67 -68.10 -0.25 4.89 16 13 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 14 C -0.14 -2.45 6.28 -24.90 -0.16 -2.61 16 15 C 0.06 1.10 4.86 -24.58 -0.12 0.98 16 16 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 17 F -0.21 -4.38 17.24 2.25 0.04 -4.34 16 18 C 0.13 3.12 5.70 -2.53 -0.01 3.10 16 19 N -0.57 -14.42 3.10 -163.87 -0.51 -14.93 16 20 C -0.22 -6.12 9.95 -15.06 -0.15 -6.27 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 23 N -0.92 -26.37 10.09 55.49 0.56 -25.81 16 24 Si 0.92 22.39 29.55 -169.99 -5.02 17.37 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 N -0.27 -5.33 12.77 32.42 0.41 -4.91 16 29 N -0.48 -7.03 7.45 32.62 0.24 -6.79 16 30 H 0.43 4.67 8.96 -182.34 -1.63 3.03 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.74 5.95 -51.93 -0.31 0.44 16 34 H 0.08 0.67 7.95 -51.93 -0.41 0.26 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.41 3.04 8.46 -40.82 -0.35 2.69 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.30 7.84 -51.93 -0.41 0.90 16 45 H 0.12 3.27 5.87 -51.93 -0.30 2.97 16 46 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -33.87 389.07 -10.04 -43.91 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.46 Total: 3.03 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -2.82 Total: 9.45 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: 0.28 Total: -68.55 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.08 Total: -6.73 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.87 -10.04 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131142357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.502 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds