Wall clock time and date at job start Tue Mar 31 2020 23:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47407 * 2 1 4 4 C 1.53003 * 109.47044 * 120.00383 * 2 1 3 5 5 C 1.50697 * 109.47256 * 64.99824 * 4 2 1 6 6 O 1.21286 * 120.00060 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99975 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99887 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47322 * 180.02562 * 8 7 5 10 10 N 1.30838 * 125.95710 * 275.30408 * 9 8 7 11 11 C 1.33239 * 109.82337 * 180.11691 * 10 9 8 12 12 C 1.50702 * 125.52232 * 179.85363 * 11 10 9 13 13 H 1.08994 * 110.00256 * 343.62385 * 12 11 10 14 14 C 1.54327 * 109.88237 * 104.72510 * 12 11 10 15 15 C 1.55156 * 102.94181 * 141.60964 * 14 12 11 16 16 H 1.09000 * 110.99867 * 206.38039 * 15 14 12 17 17 F 1.39896 * 111.00662 * 82.57142 * 15 14 12 18 18 C 1.54908 * 101.58197 * 324.49449 * 15 14 12 19 19 N 1.47031 * 109.88194 * 222.53015 * 12 11 10 20 20 C 1.36934 * 125.64541 * 61.59557 * 19 12 11 21 21 H 1.07997 * 120.00156 * 0.02562 * 20 19 12 22 22 C 1.38816 * 119.99339 * 179.97438 * 20 19 12 23 23 N 1.31619 * 120.00310 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99553 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47377 * 60.00572 * 24 22 20 26 26 H 1.48505 * 109.47153 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47370 * 300.00335 * 24 22 20 28 28 N 1.30707 * 108.95029 * 359.59669 * 11 10 9 29 29 N 1.34423 * 125.96332 * 94.97068 * 9 8 7 30 30 H 0.96997 * 126.82232 * 0.07562 * 29 9 8 31 31 H 1.08998 * 109.47053 * 299.99550 * 1 2 3 32 32 H 1.09001 * 109.47179 * 59.99639 * 1 2 3 33 33 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46660 * 239.99812 * 2 1 3 35 35 H 1.09004 * 109.47481 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47246 * 300.00320 * 3 2 1 37 37 H 1.09004 * 109.46922 * 60.00496 * 3 2 1 38 38 H 1.08998 * 109.47266 * 304.99675 * 4 2 1 39 39 H 1.09001 * 109.46688 * 184.99516 * 4 2 1 40 40 H 0.97001 * 120.00171 * 359.97438 * 7 5 4 41 41 H 1.08995 * 109.47660 * 60.00007 * 8 7 5 42 42 H 1.09006 * 109.47295 * 299.99788 * 8 7 5 43 43 H 1.09001 * 110.71763 * 259.97298 * 14 12 11 44 44 H 1.08997 * 110.72099 * 23.06335 * 14 12 11 45 45 H 1.09000 * 110.36459 * 155.84880 * 18 15 14 46 46 H 1.09001 * 110.36573 * 278.06223 * 18 15 14 47 47 H 0.97000 * 119.99728 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1734 1.1888 6 8 1.0116 -2.5904 0.2398 7 7 1.9853 -3.0088 2.1889 8 6 1.5981 -4.4205 2.1299 9 6 2.1003 -5.1310 3.3604 10 7 3.2966 -5.6358 3.5216 11 6 3.3936 -6.1916 4.7286 12 6 4.6163 -6.8782 5.2808 13 1 5.3078 -7.1152 4.4723 14 6 5.3096 -5.9649 6.3136 15 6 5.7747 -6.9649 7.4049 16 1 5.8560 -6.4746 8.3750 17 9 6.9851 -7.5690 7.0485 18 6 4.6170 -7.9942 7.3973 19 7 4.2245 -8.1102 5.9810 20 6 3.5979 -9.1867 5.4120 21 1 3.3509 -9.1742 4.3608 22 6 3.2812 -10.2944 6.1864 23 7 3.5827 -10.3098 7.4675 24 14 2.4271 -11.7632 5.4102 25 1 3.2787 -12.3151 4.3261 26 1 2.2009 -12.8067 6.4423 27 1 1.1221 -11.3353 4.8452 28 7 2.2582 -6.0400 5.3582 29 7 1.3995 -5.3512 4.4861 30 1 0.4827 -5.0873 4.6611 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8901 38 1 1.6054 -0.2619 2.1370 39 1 3.1263 -0.6445 1.2950 40 1 2.4898 -2.6756 2.9474 41 1 2.0327 -4.8797 1.2420 42 1 0.5118 -4.4978 2.0842 43 1 6.1641 -5.4567 5.8668 44 1 4.6045 -5.2422 6.7242 45 1 4.9624 -8.9564 7.7752 46 1 3.7817 -7.6301 7.9956 47 1 3.3610 -11.0837 8.0086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131142357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:56 Heat of formation + Delta-G solvation = -7.411413 kcal Electronic energy + Delta-G solvation = -29363.436307 eV Core-core repulsion = 25110.870679 eV Total energy + Delta-G solvation = -4252.565628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.36850 -43.20332 -40.88223 -38.85483 -36.83483 -35.88460 -34.64047 -33.56130 -32.61693 -31.13266 -30.01538 -29.21777 -27.91085 -27.24370 -26.62666 -23.85597 -22.23233 -22.07636 -21.93601 -20.90807 -20.76665 -19.21957 -18.86819 -18.08841 -17.43094 -17.32325 -17.05922 -16.71014 -16.22164 -16.00125 -15.67361 -15.61660 -15.34749 -15.11554 -14.99514 -14.67450 -14.39817 -14.23896 -14.08554 -13.44257 -13.39976 -13.25745 -13.01370 -12.91306 -12.86940 -12.69011 -12.68686 -12.46802 -12.11420 -12.04177 -11.96549 -11.76038 -11.71999 -11.53711 -11.30352 -11.13532 -11.05210 -10.94459 -10.80763 -10.46246 -10.22662 -9.00986 -7.83087 -5.27002 0.48668 1.40814 1.43116 1.49657 1.59051 1.64606 1.73786 2.32823 2.44198 2.82095 3.29229 3.42083 3.55589 3.68721 3.74868 3.78835 3.91658 3.95624 3.99622 4.07131 4.19866 4.38362 4.41582 4.52669 4.59474 4.69098 4.72257 4.76364 4.78476 4.88285 4.88829 5.08785 5.11986 5.15730 5.22919 5.33709 5.34592 5.34829 5.39218 5.51672 5.51899 5.55633 5.71182 6.14553 6.24160 6.44151 7.03731 7.11184 7.19131 7.68579 8.29474 9.18805 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.002417 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.203689 B =11582.122788 C =12854.159259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.131 4.131 5 C 0.516 3.484 6 O -0.571 6.571 7 N -0.717 5.717 8 C 0.214 3.786 9 C 0.263 3.737 10 N -0.545 5.545 11 C 0.221 3.779 12 C 0.234 3.766 13 H 0.058 0.942 14 C -0.123 4.123 15 C 0.066 3.934 16 H 0.126 0.874 17 F -0.221 7.221 18 C 0.133 3.867 19 N -0.593 5.593 20 C -0.227 4.227 21 H 0.064 0.936 22 C -0.056 4.056 23 N -0.941 5.941 24 Si 0.974 3.026 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.286 1.286 28 N -0.306 5.306 29 N -0.468 5.468 30 H 0.452 0.548 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.414 0.586 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.017 0.983 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 24.278 -8.088 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 C -0.201 4.201 4 C -0.170 4.170 5 C 0.305 3.695 6 O -0.450 6.450 7 N -0.372 5.372 8 C 0.087 3.913 9 C -0.016 4.016 10 N -0.275 5.275 11 C -0.065 4.065 12 C 0.124 3.876 13 H 0.075 0.925 14 C -0.162 4.162 15 C 0.029 3.971 16 H 0.144 0.856 17 F -0.202 7.202 18 C 0.008 3.992 19 N -0.316 5.316 20 C -0.356 4.356 21 H 0.082 0.918 22 C -0.249 4.249 23 N -0.590 5.590 24 Si 0.802 3.198 25 H -0.204 1.204 26 H -0.213 1.213 27 H -0.213 1.213 28 N -0.134 5.134 29 N -0.189 5.189 30 H 0.300 0.700 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.250 0.750 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.035 0.965 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.519 23.445 -8.206 25.087 hybrid contribution -1.130 -1.114 -0.034 1.587 sum -4.649 22.330 -8.240 24.252 Atomic orbital electron populations 1.21935 0.95407 1.01918 1.01713 1.20863 0.96084 0.96451 0.96758 1.21825 1.01423 0.94369 1.02506 1.21842 1.04472 0.89076 1.01653 1.21319 0.78003 0.89409 0.80802 1.90695 1.41324 1.78769 1.34250 1.45910 1.58444 1.07761 1.25044 1.19521 1.00810 0.80817 0.90120 1.24398 0.88231 0.97852 0.91137 1.70343 1.19734 1.18198 1.19254 1.25461 0.96178 0.96074 0.88742 1.19530 0.87796 0.85585 0.94738 0.92458 1.23093 1.01305 0.96627 0.95217 1.23073 0.80516 0.94013 0.99456 0.85638 1.92742 1.47621 1.85844 1.93967 1.22366 0.92697 0.98880 0.85269 1.44586 1.68593 1.12576 1.05880 1.19029 1.30303 0.93097 0.93134 0.91823 1.25474 1.02266 1.00804 0.96348 1.69950 1.52883 1.30347 1.05771 0.85236 0.78178 0.79163 0.77209 1.20425 1.21298 1.21277 1.78179 1.02669 1.16213 1.16365 1.48082 1.15802 1.43911 1.11075 0.70036 0.92151 0.92892 0.93126 0.92306 0.91836 0.92455 0.91585 0.86463 0.86705 0.74952 0.88598 0.87422 0.87382 0.88676 0.89637 0.96475 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.93 71.98 0.64 -1.54 16 2 C -0.08 -1.03 2.57 -10.80 -0.03 -1.05 16 3 C -0.14 -1.20 9.19 71.98 0.66 -0.54 16 4 C -0.13 -1.30 5.17 29.85 0.15 -1.15 16 5 C 0.52 8.66 7.55 87.66 0.66 9.32 16 6 O -0.57 -14.06 13.97 -3.05 -0.04 -14.10 16 7 N -0.72 -10.90 5.55 -466.78 -2.59 -13.49 16 8 C 0.21 4.12 6.30 85.63 0.54 4.65 16 9 C 0.26 6.97 7.60 138.23 1.05 8.03 16 10 N -0.55 -18.89 11.19 -179.73 -2.01 -20.90 16 11 C 0.22 8.73 6.56 138.63 0.91 9.64 16 12 C 0.23 9.89 3.67 44.59 0.16 10.05 16 13 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 14 C -0.12 -4.06 6.28 31.78 0.20 -3.86 16 15 C 0.07 2.43 4.86 31.99 0.16 2.58 16 16 H 0.13 3.59 8.14 -2.39 -0.02 3.57 16 17 F -0.22 -8.98 17.24 44.97 0.78 -8.20 16 18 C 0.13 6.42 5.70 86.86 0.50 6.92 16 19 N -0.59 -30.36 3.10 -672.37 -2.08 -32.45 16 20 C -0.23 -12.92 9.95 84.03 0.84 -12.08 16 21 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 23 N -0.94 -55.60 10.09 21.65 0.22 -55.38 16 24 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 N -0.31 -11.86 12.77 -51.34 -0.66 -12.51 16 29 N -0.47 -12.82 7.45 -50.71 -0.38 -13.19 16 30 H 0.45 8.74 8.96 -213.10 -1.91 6.83 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.98 5.95 -2.39 -0.01 0.97 16 34 H 0.06 0.97 7.95 -2.39 -0.02 0.95 16 35 H 0.06 0.44 8.14 -2.38 -0.02 0.43 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.41 4.97 8.46 -92.71 -0.78 4.19 16 41 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.09 2.86 7.84 -2.39 -0.02 2.84 16 45 H 0.09 4.77 5.87 -2.39 -0.01 4.75 16 46 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -76.24 389.07 0.48 -75.76 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -1.69 Total: 17.32 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 6.91 Total: 28.25 kcal Atomic # 7 Polarization: -140.43 SS G_CDS: -7.50 Total: -147.93 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.04 Total: -14.10 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 0.78 Total: -8.20 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -76.24 0.48 -75.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131142357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.346 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds