Wall clock time and date at job start Tue Mar 31 2020 23:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 7 7 O 1.21287 * 119.99375 * 359.97438 * 6 3 2 8 8 N 1.34768 * 120.00550 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99870 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.46901 * 179.97438 * 9 8 6 11 11 N 1.30834 * 125.96277 * 274.71428 * 10 9 8 12 12 C 1.33238 * 109.83332 * 179.86576 * 11 10 9 13 13 C 1.50699 * 125.52981 * 180.12746 * 12 11 10 14 14 H 1.09003 * 109.87260 * 344.28023 * 13 12 11 15 15 C 1.54324 * 109.88309 * 105.29441 * 13 12 11 16 16 C 1.55159 * 102.94173 * 141.60936 * 15 13 12 17 17 H 1.08995 * 111.00376 * 206.42466 * 16 15 13 18 18 F 1.39902 * 111.00223 * 82.61176 * 16 15 13 19 19 C 1.54903 * 101.58150 * 324.49864 * 16 15 13 20 20 N 1.47026 * 109.88088 * 223.10423 * 13 12 11 21 21 C 1.36929 * 125.64830 * 61.62415 * 20 13 12 22 22 H 1.08000 * 120.00198 * 359.97438 * 21 20 13 23 23 C 1.38814 * 120.00100 * 179.97438 * 21 20 13 24 24 N 1.31627 * 119.99869 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47092 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46887 * 120.00047 * 25 23 21 28 28 H 1.48504 * 109.47119 * 239.99786 * 25 23 21 29 29 N 1.30719 * 108.94217 * 0.40028 * 12 11 10 30 30 N 1.34431 * 125.96162 * 95.02073 * 10 9 8 31 31 H 0.96998 * 126.82438 * 359.94421 * 30 10 9 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 34 34 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 35 35 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 36 36 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 37 37 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 38 38 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 39 39 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 40 40 H 0.97005 * 120.00103 * 359.97438 * 8 6 3 41 41 H 1.09000 * 109.47148 * 299.99056 * 9 8 6 42 42 H 1.08998 * 109.47345 * 59.99868 * 9 8 6 43 43 H 1.08995 * 110.72161 * 259.97521 * 15 13 12 44 44 H 1.09001 * 110.72018 * 23.07293 * 15 13 12 45 45 H 1.09003 * 110.36794 * 155.84641 * 19 16 15 46 46 H 1.08993 * 110.36886 * 278.05989 * 19 16 15 47 47 H 0.96996 * 120.00336 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4445 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2148 2.6119 0.1457 9 6 5.6749 2.6136 0.2655 10 6 6.1772 4.0345 0.2656 11 7 6.4378 4.7574 -0.7933 12 6 6.8600 5.9657 -0.4230 13 6 7.2545 7.0799 -1.3578 14 1 7.4138 6.6835 -2.3606 15 6 6.1484 8.1557 -1.3883 16 6 6.9537 9.4802 -1.4571 17 1 6.3842 10.3062 -1.0312 18 9 7.3389 9.7652 -2.7715 19 6 8.1836 9.1424 -0.5780 20 7 8.4813 7.7289 -0.8726 21 6 9.6987 7.1209 -0.7193 22 1 9.8146 6.0752 -0.9633 23 6 10.7838 7.8486 -0.2504 24 7 10.6427 9.1232 0.0464 25 14 12.4443 7.0191 -0.0407 26 1 12.3393 5.5930 -0.4411 27 1 13.4493 7.7001 -0.8959 28 1 12.8645 7.1051 1.3810 29 7 6.8822 6.0258 0.8826 30 7 6.4411 4.7784 1.3538 31 1 6.3454 4.5077 2.2803 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 0.5488 2.1253 -1.3968 38 1 1.9988 3.1541 -1.3075 39 1 2.0698 1.5875 -2.1492 40 1 3.7324 3.4511 0.0815 41 1 5.9637 2.1258 1.1965 42 1 6.1092 2.0752 -0.5768 43 1 5.5215 8.0392 -2.2723 44 1 5.5453 8.1146 -0.4813 45 1 9.0297 9.7731 -0.8509 46 1 7.9419 9.2689 0.4772 47 1 11.4009 9.6318 0.3737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131144072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:34 Heat of formation + Delta-G solvation = 15.159593 kcal Electronic energy + Delta-G solvation = -29544.443960 eV Core-core repulsion = 25292.857085 eV Total energy + Delta-G solvation = -4251.586876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.75896 -41.87066 -40.18396 -37.16444 -35.91931 -35.20017 -32.79594 -32.10160 -31.43793 -30.04899 -29.26606 -27.94319 -26.92856 -25.44926 -24.70054 -22.39821 -22.03057 -20.85345 -20.38589 -20.09171 -19.30089 -18.08380 -17.18009 -16.97613 -16.51281 -15.93736 -15.77519 -15.27372 -15.07756 -14.89153 -14.42197 -14.14384 -14.06511 -13.87630 -13.73812 -13.57602 -13.38128 -13.05956 -12.84535 -12.50809 -12.36421 -12.04381 -11.96533 -11.70676 -11.63411 -11.55002 -11.19363 -11.05348 -11.04494 -10.90123 -10.74354 -10.38511 -10.13370 -10.08491 -9.95774 -9.70831 -9.67394 -9.52309 -9.44467 -9.16233 -8.74743 -7.01732 -5.74142 -3.16332 1.70227 2.34852 2.73101 2.97437 3.35493 3.38083 3.43293 3.45550 3.98711 4.29265 4.39450 4.42441 4.53584 4.75794 4.87220 4.93256 5.00799 5.09932 5.11364 5.19329 5.22513 5.34020 5.40930 5.45198 5.47512 5.51249 5.53054 5.62023 5.64211 5.71497 5.77309 5.88494 5.95724 6.02666 6.14948 6.18879 6.34359 6.59817 6.79586 6.83065 7.11907 7.25021 7.32738 7.52074 7.73063 7.88948 8.23024 8.47242 9.10961 9.71224 10.30756 11.30571 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.002552 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.080791 B =10967.505328 C =12269.083288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.109 4.109 4 H 0.097 0.903 5 C -0.148 4.148 6 C 0.520 3.480 7 O -0.538 6.538 8 N -0.724 5.724 9 C 0.207 3.793 10 C 0.238 3.762 11 N -0.519 5.519 12 C 0.230 3.770 13 C 0.243 3.757 14 H 0.072 0.928 15 C -0.140 4.140 16 C 0.058 3.942 17 H 0.084 0.916 18 F -0.210 7.210 19 C 0.131 3.869 20 N -0.574 5.574 21 C -0.218 4.218 22 H 0.076 0.924 23 C -0.004 4.004 24 N -0.919 5.919 25 Si 0.916 3.084 26 H -0.280 1.280 27 H -0.288 1.288 28 H -0.290 1.290 29 N -0.269 5.269 30 N -0.484 5.484 31 H 0.434 0.566 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.405 0.595 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.034 0.966 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.375 -10.960 1.628 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.131 4.131 4 H 0.115 0.885 5 C -0.205 4.205 6 C 0.307 3.693 7 O -0.414 6.414 8 N -0.378 5.378 9 C 0.081 3.919 10 C -0.041 4.041 11 N -0.249 5.249 12 C -0.055 4.055 13 C 0.130 3.870 14 H 0.090 0.910 15 C -0.180 4.180 16 C 0.020 3.980 17 H 0.102 0.898 18 F -0.191 7.191 19 C 0.006 3.994 20 N -0.296 5.296 21 C -0.346 4.346 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.566 5.566 25 Si 0.747 3.253 26 H -0.206 1.206 27 H -0.215 1.215 28 H -0.217 1.217 29 N -0.097 5.097 30 N -0.203 5.203 31 H 0.278 0.722 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.240 0.760 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.140 0.860 46 H 0.052 0.948 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.423 -11.085 1.733 22.431 hybrid contribution 0.649 -0.436 0.957 1.236 sum -18.774 -11.521 2.690 22.191 Atomic orbital electron populations 1.21848 0.95417 1.01963 1.01923 1.21351 0.95397 0.94010 1.03603 1.21361 0.91236 0.99653 1.00818 0.88455 1.21852 1.02458 1.00436 0.95759 1.20735 0.90130 0.83075 0.75397 1.90723 1.70317 1.31257 1.49082 1.45981 1.06706 1.09474 1.75600 1.19512 0.80516 0.87283 1.04608 1.23932 1.00119 0.95866 0.84189 1.70381 1.20993 1.04347 1.29159 1.26000 0.94868 0.93805 0.90858 1.19465 0.87483 0.86929 0.93074 0.91024 1.23128 0.97207 0.94921 1.02723 1.23065 0.99071 0.96157 0.79682 0.89807 1.92763 1.92876 1.94694 1.38767 1.22611 0.94880 0.87192 0.94708 1.44486 1.03632 1.05877 1.75651 1.19011 0.84300 0.94158 1.37161 0.90576 1.24762 0.98291 0.96090 1.00878 1.69740 1.29804 1.06670 1.50432 0.85974 0.83613 0.78400 0.77353 1.20561 1.21472 1.21745 1.78296 1.20494 0.97755 1.13110 1.48267 1.51342 1.11199 1.09474 0.72161 0.92427 0.92724 0.92336 0.91116 0.91169 0.91051 0.91980 0.91779 0.76026 0.89335 0.87814 0.90260 0.90221 0.86023 0.94787 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.67 37.16 0.36 -0.45 16 2 C -0.11 -0.76 4.75 -26.73 -0.13 -0.89 16 3 C -0.11 -0.75 2.72 -91.77 -0.25 -1.00 16 4 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 5 C -0.15 -0.87 8.85 37.16 0.33 -0.55 16 6 C 0.52 5.14 7.15 -10.99 -0.08 5.06 16 7 O -0.54 -7.28 15.92 5.55 0.09 -7.20 16 8 N -0.72 -6.60 5.44 -61.47 -0.33 -6.94 16 9 C 0.21 2.24 6.30 -5.19 -0.03 2.21 16 10 C 0.24 3.38 7.61 -155.69 -1.18 2.20 16 11 N -0.52 -9.28 11.19 -8.16 -0.09 -9.38 16 12 C 0.23 4.62 6.56 -156.85 -1.03 3.59 16 13 C 0.24 5.14 3.67 -68.10 -0.25 4.89 16 14 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 15 C -0.14 -2.45 6.28 -24.90 -0.16 -2.60 16 16 C 0.06 1.10 4.86 -24.58 -0.12 0.98 16 17 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 18 F -0.21 -4.37 17.24 2.25 0.04 -4.34 16 19 C 0.13 3.11 5.70 -2.53 -0.01 3.09 16 20 N -0.57 -14.42 3.10 -163.88 -0.51 -14.93 16 21 C -0.22 -6.07 9.95 -15.06 -0.15 -6.22 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -26.38 10.09 55.49 0.56 -25.82 16 25 Si 0.92 22.41 29.55 -169.99 -5.02 17.39 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 N -0.27 -5.32 12.77 32.42 0.41 -4.91 16 30 N -0.48 -7.04 7.45 32.62 0.24 -6.80 16 31 H 0.43 4.67 8.96 -182.34 -1.63 3.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 35 H 0.07 0.58 7.95 -51.93 -0.41 0.17 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.33 6.56 -51.93 -0.34 -0.01 16 38 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 39 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.40 3.18 7.88 -40.82 -0.32 2.86 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 45 H 0.12 3.28 5.87 -51.93 -0.30 2.97 16 46 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -34.11 388.52 -9.91 -44.02 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.35 Total: 2.95 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -2.80 Total: 10.08 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: 0.28 Total: -68.76 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.20 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.11 -9.91 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131144072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.182 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds