Wall clock time and date at job start Tue Mar 31 2020 23:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 7 7 O 1.21287 * 119.99375 * 359.97438 * 6 3 2 8 8 N 1.34768 * 120.00550 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99870 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.46901 * 179.97438 * 9 8 6 11 11 N 1.30834 * 125.96277 * 274.71428 * 10 9 8 12 12 C 1.33238 * 109.83332 * 179.86576 * 11 10 9 13 13 C 1.50699 * 125.52981 * 180.12746 * 12 11 10 14 14 H 1.09003 * 109.87260 * 344.28023 * 13 12 11 15 15 C 1.54324 * 109.88309 * 105.29441 * 13 12 11 16 16 C 1.55159 * 102.94173 * 141.60936 * 15 13 12 17 17 H 1.08995 * 111.00376 * 206.42466 * 16 15 13 18 18 F 1.39902 * 111.00223 * 82.61176 * 16 15 13 19 19 C 1.54903 * 101.58150 * 324.49864 * 16 15 13 20 20 N 1.47026 * 109.88088 * 223.10423 * 13 12 11 21 21 C 1.36929 * 125.64830 * 61.62415 * 20 13 12 22 22 H 1.08000 * 120.00198 * 359.97438 * 21 20 13 23 23 C 1.38814 * 120.00100 * 179.97438 * 21 20 13 24 24 N 1.31627 * 119.99869 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47092 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46887 * 120.00047 * 25 23 21 28 28 H 1.48504 * 109.47119 * 239.99786 * 25 23 21 29 29 N 1.30719 * 108.94217 * 0.40028 * 12 11 10 30 30 N 1.34431 * 125.96162 * 95.02073 * 10 9 8 31 31 H 0.96998 * 126.82438 * 359.94421 * 30 10 9 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 34 34 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 35 35 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 36 36 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 37 37 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 38 38 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 39 39 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 40 40 H 0.97005 * 120.00103 * 359.97438 * 8 6 3 41 41 H 1.09000 * 109.47148 * 299.99056 * 9 8 6 42 42 H 1.08998 * 109.47345 * 59.99868 * 9 8 6 43 43 H 1.08995 * 110.72161 * 259.97521 * 15 13 12 44 44 H 1.09001 * 110.72018 * 23.07293 * 15 13 12 45 45 H 1.09003 * 110.36794 * 155.84641 * 19 16 15 46 46 H 1.08993 * 110.36886 * 278.05989 * 19 16 15 47 47 H 0.96996 * 120.00336 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4445 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2148 2.6119 0.1457 9 6 5.6749 2.6136 0.2655 10 6 6.1772 4.0345 0.2656 11 7 6.4378 4.7574 -0.7933 12 6 6.8600 5.9657 -0.4230 13 6 7.2545 7.0799 -1.3578 14 1 7.4138 6.6835 -2.3606 15 6 6.1484 8.1557 -1.3883 16 6 6.9537 9.4802 -1.4571 17 1 6.3842 10.3062 -1.0312 18 9 7.3389 9.7652 -2.7715 19 6 8.1836 9.1424 -0.5780 20 7 8.4813 7.7289 -0.8726 21 6 9.6987 7.1209 -0.7193 22 1 9.8146 6.0752 -0.9633 23 6 10.7838 7.8486 -0.2504 24 7 10.6427 9.1232 0.0464 25 14 12.4443 7.0191 -0.0407 26 1 12.3393 5.5930 -0.4411 27 1 13.4493 7.7001 -0.8959 28 1 12.8645 7.1051 1.3810 29 7 6.8822 6.0258 0.8826 30 7 6.4411 4.7784 1.3538 31 1 6.3454 4.5077 2.2803 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 0.5488 2.1253 -1.3968 38 1 1.9988 3.1541 -1.3075 39 1 2.0698 1.5875 -2.1492 40 1 3.7324 3.4511 0.0815 41 1 5.9637 2.1258 1.1965 42 1 6.1092 2.0752 -0.5768 43 1 5.5215 8.0392 -2.2723 44 1 5.5453 8.1146 -0.4813 45 1 9.0297 9.7731 -0.8509 46 1 7.9419 9.2689 0.4772 47 1 11.4009 9.6318 0.3737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131144072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:33 Heat of formation + Delta-G solvation = -8.083483 kcal Electronic energy + Delta-G solvation = -29545.451856 eV Core-core repulsion = 25292.857085 eV Total energy + Delta-G solvation = -4252.594771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.36716 -43.20918 -40.99375 -38.85754 -36.56794 -36.10105 -34.64442 -33.56540 -32.61619 -31.14066 -30.69565 -29.46735 -27.97310 -26.63765 -26.01329 -23.87412 -22.79930 -22.10946 -22.01212 -20.91990 -20.80235 -19.22013 -18.87301 -18.10708 -17.46576 -17.36427 -17.06527 -16.65096 -16.25373 -15.99174 -15.65848 -15.58568 -15.36532 -15.28106 -14.98529 -14.64373 -14.37528 -14.19647 -14.07773 -13.52193 -13.45543 -13.40336 -12.95851 -12.91811 -12.87850 -12.72354 -12.54100 -12.49345 -12.46036 -12.06913 -11.98352 -11.75017 -11.69395 -11.56314 -11.30313 -11.13516 -11.06425 -10.96462 -10.82607 -10.48312 -10.28379 -9.01169 -7.83755 -5.27546 0.47568 1.40481 1.41561 1.51074 1.55489 1.60937 1.72513 2.29244 2.43452 2.80755 3.28710 3.41795 3.54666 3.65108 3.71409 3.75378 3.87558 3.93377 3.98840 4.01669 4.19018 4.38854 4.41157 4.49712 4.55858 4.59357 4.64779 4.69136 4.75975 4.88313 4.99067 5.05109 5.13738 5.15923 5.16617 5.25893 5.33504 5.34475 5.39477 5.40850 5.51675 5.53289 5.71000 6.13936 6.23845 6.38963 7.03511 7.10695 7.12171 7.68137 8.28971 9.18543 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.002552 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.080791 B =10967.505328 C =12269.083288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.103 4.103 4 H 0.122 0.878 5 C -0.145 4.145 6 C 0.520 3.480 7 O -0.577 6.577 8 N -0.714 5.714 9 C 0.213 3.787 10 C 0.263 3.737 11 N -0.544 5.544 12 C 0.220 3.780 13 C 0.234 3.766 14 H 0.058 0.942 15 C -0.123 4.123 16 C 0.066 3.934 17 H 0.126 0.874 18 F -0.221 7.221 19 C 0.133 3.867 20 N -0.593 5.593 21 C -0.224 4.224 22 H 0.064 0.936 23 C -0.057 4.057 24 N -0.941 5.941 25 Si 0.973 3.027 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.291 1.291 29 N -0.305 5.305 30 N -0.467 5.467 31 H 0.452 0.548 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.414 0.586 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.018 0.982 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.823 -11.648 2.021 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.124 4.124 4 H 0.140 0.860 5 C -0.203 4.203 6 C 0.308 3.692 7 O -0.456 6.456 8 N -0.368 5.368 9 C 0.086 3.914 10 C -0.016 4.016 11 N -0.274 5.274 12 C -0.065 4.065 13 C 0.124 3.876 14 H 0.075 0.925 15 C -0.162 4.162 16 C 0.029 3.971 17 H 0.144 0.856 18 F -0.202 7.202 19 C 0.008 3.992 20 N -0.316 5.316 21 C -0.353 4.353 22 H 0.082 0.918 23 C -0.250 4.250 24 N -0.590 5.590 25 Si 0.802 3.198 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.218 1.218 29 N -0.133 5.133 30 N -0.188 5.188 31 H 0.300 0.700 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.251 0.749 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.922 -11.779 2.135 24.978 hybrid contribution 1.358 -0.339 0.849 1.638 sum -20.564 -12.118 2.984 24.055 Atomic orbital electron populations 1.21820 0.93661 1.02385 1.02829 1.21331 0.96857 0.93997 1.02170 1.21403 0.88778 0.99846 1.02338 0.86044 1.21859 1.03595 1.00282 0.94523 1.21309 0.91324 0.82347 0.74200 1.90712 1.71310 1.32639 1.50976 1.45872 1.05833 1.09920 1.75166 1.19542 0.81580 0.84825 1.05413 1.24357 0.97865 0.96318 0.83108 1.70336 1.22371 1.04027 1.30715 1.25473 0.95907 0.94245 0.90835 1.19531 0.87379 0.88395 0.92339 0.92451 1.23093 0.96121 0.92174 1.04844 1.23071 0.97152 0.98543 0.78290 0.85638 1.92744 1.93041 1.94867 1.39521 1.22367 0.95802 0.86269 0.94794 1.44597 1.04313 1.06838 1.75888 1.19095 0.85917 0.93711 1.36556 0.91821 1.25473 1.01189 0.96793 1.01503 1.69965 1.30158 1.07524 1.51350 0.85090 0.80059 0.77648 0.76978 1.20116 1.21306 1.21765 1.78183 1.21678 1.00344 1.13132 1.48084 1.50359 1.09790 1.10599 0.70014 0.92364 0.91731 0.91429 0.92525 0.92748 0.89235 0.91433 0.93061 0.74937 0.87296 0.88573 0.87368 0.88652 0.89643 0.96446 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 71.98 0.70 -0.55 16 2 C -0.11 -1.38 4.75 30.59 0.15 -1.23 16 3 C -0.10 -1.17 2.72 -11.54 -0.03 -1.21 16 4 H 0.12 0.85 8.14 -2.38 -0.02 0.84 16 5 C -0.15 -1.35 8.85 71.98 0.64 -0.72 16 6 C 0.52 9.41 7.15 87.66 0.63 10.04 16 7 O -0.58 -15.20 15.92 -3.05 -0.05 -15.25 16 8 N -0.71 -11.44 5.44 -466.78 -2.54 -13.98 16 9 C 0.21 4.19 6.30 85.63 0.54 4.73 16 10 C 0.26 7.00 7.61 138.23 1.05 8.05 16 11 N -0.54 -18.89 11.19 -179.72 -2.01 -20.90 16 12 C 0.22 8.71 6.56 138.63 0.91 9.62 16 13 C 0.23 9.87 3.67 44.59 0.16 10.03 16 14 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.12 -4.04 6.28 31.78 0.20 -3.84 16 16 C 0.07 2.42 4.86 31.98 0.16 2.58 16 17 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 18 F -0.22 -8.96 17.24 44.97 0.78 -8.19 16 19 C 0.13 6.40 5.70 86.85 0.50 6.90 16 20 N -0.59 -30.32 3.10 -672.39 -2.08 -32.40 16 21 C -0.22 -12.75 9.95 84.04 0.84 -11.91 16 22 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 23 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 24 N -0.94 -55.62 10.09 21.65 0.22 -55.40 16 25 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 29 N -0.30 -11.79 12.77 -51.33 -0.66 -12.44 16 30 N -0.47 -12.79 7.45 -50.70 -0.38 -13.17 16 31 H 0.45 8.71 8.96 -213.10 -1.91 6.80 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.45 6.56 -2.39 -0.02 0.43 16 35 H 0.06 0.89 7.95 -2.39 -0.02 0.88 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.54 6.56 -2.39 -0.02 0.52 16 38 H 0.07 0.57 7.56 -2.39 -0.02 0.55 16 39 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.41 5.33 7.88 -92.70 -0.73 4.60 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.09 2.86 7.84 -2.39 -0.02 2.84 16 45 H 0.09 4.76 5.87 -2.39 -0.01 4.75 16 46 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -76.52 388.52 0.57 -75.96 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -1.63 Total: 17.09 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 6.89 Total: 29.71 kcal Atomic # 7 Polarization: -140.84 SS G_CDS: -7.45 Total: -148.29 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.05 Total: -15.25 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.78 Total: -8.19 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -76.52 0.57 -75.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131144072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.872 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds