Wall clock time and date at job start Tue Mar 31 2020 23:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47331 * 2 1 4 4 H 1.09001 * 109.46688 * 304.99945 * 3 2 1 5 5 C 1.52998 * 109.47078 * 65.00084 * 3 2 1 6 6 C 1.50697 * 109.47256 * 185.00253 * 3 2 1 7 7 O 1.21286 * 120.00060 * 0.02562 * 6 3 2 8 8 N 1.34778 * 119.99975 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99887 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.47322 * 180.02562 * 9 8 6 11 11 N 1.30838 * 125.95710 * 275.30408 * 10 9 8 12 12 C 1.33239 * 109.82337 * 180.11691 * 11 10 9 13 13 C 1.50702 * 125.52232 * 179.85363 * 12 11 10 14 14 H 1.08994 * 110.00256 * 343.62385 * 13 12 11 15 15 C 1.54327 * 109.88237 * 104.72510 * 13 12 11 16 16 C 1.55156 * 102.94181 * 141.60964 * 15 13 12 17 17 H 1.09003 * 110.99778 * 206.42172 * 16 15 13 18 18 F 1.39903 * 111.00358 * 82.61303 * 16 15 13 19 19 C 1.54908 * 101.58197 * 324.49449 * 16 15 13 20 20 N 1.47031 * 109.88194 * 222.53015 * 13 12 11 21 21 C 1.36934 * 125.64541 * 61.59557 * 20 13 12 22 22 H 1.07997 * 120.00156 * 0.02562 * 21 20 13 23 23 C 1.38816 * 119.99339 * 179.97438 * 21 20 13 24 24 N 1.31619 * 120.00310 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99553 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47173 * 90.00353 * 25 23 21 27 27 H 1.48504 * 109.47126 * 210.00364 * 25 23 21 28 28 H 1.48504 * 109.47363 * 330.00222 * 25 23 21 29 29 N 1.30707 * 108.95029 * 359.59669 * 12 11 10 30 30 N 1.34423 * 125.96332 * 94.97068 * 10 9 8 31 31 H 0.96997 * 126.82232 * 0.07562 * 30 10 9 32 32 H 1.09004 * 109.46922 * 300.00289 * 1 2 3 33 33 H 1.09004 * 109.47481 * 59.99868 * 1 2 3 34 34 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47364 * 239.99964 * 2 1 3 36 36 H 1.08996 * 109.47695 * 120.00266 * 2 1 3 37 37 H 1.08999 * 109.46774 * 300.00205 * 5 3 2 38 38 H 1.09006 * 109.47039 * 60.00451 * 5 3 2 39 39 H 1.09001 * 109.47018 * 180.02562 * 5 3 2 40 40 H 0.97001 * 120.00171 * 359.97438 * 8 6 3 41 41 H 1.08995 * 109.47660 * 60.00007 * 9 8 6 42 42 H 1.09006 * 109.47295 * 299.99788 * 9 8 6 43 43 H 1.09001 * 110.71763 * 259.97298 * 15 13 12 44 44 H 1.08997 * 110.72099 * 23.06335 * 15 13 12 45 45 H 1.09000 * 110.36459 * 155.84880 * 19 16 15 46 46 H 1.09001 * 110.36573 * 278.06223 * 19 16 15 47 47 H 0.97000 * 119.99728 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1450 0.3951 -0.2047 8 7 4.2149 2.6118 -0.1459 9 6 5.6748 2.6136 -0.2669 10 6 6.1773 4.0344 -0.2668 11 7 6.2543 4.8221 -1.3086 12 6 6.7460 6.0057 -0.9447 13 6 6.9857 7.1747 -1.8651 14 1 6.9787 6.8401 -2.9024 15 6 5.8935 8.2438 -1.6510 16 6 6.6813 9.5749 -1.7738 17 1 6.1923 10.3713 -1.2129 18 9 6.8465 9.9380 -3.1148 19 6 8.0376 9.1940 -1.1296 20 7 8.2779 7.8019 -1.5508 21 6 9.5017 7.1932 -1.6345 22 1 9.5722 6.1643 -1.9549 23 6 10.6516 7.8991 -1.3085 24 7 10.5656 9.1533 -0.9185 25 14 12.3211 7.0691 -1.4234 26 1 12.8817 7.2709 -2.7836 27 1 13.2386 7.6613 -0.4170 28 1 12.1703 5.6153 -1.1608 29 7 6.9816 5.9905 0.3408 30 7 6.6185 4.7155 0.8048 31 1 6.6754 4.3909 1.7170 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 0.5490 2.1252 1.3969 38 1 2.0700 1.5875 2.1492 39 1 1.9983 3.1543 1.3071 40 1 3.7325 3.4510 -0.0823 41 1 5.9629 2.1261 -1.1982 42 1 6.1099 2.0747 0.5749 43 1 5.1295 8.1750 -2.4254 44 1 5.4473 8.1465 -0.6614 45 1 8.8297 9.8446 -1.5004 46 1 7.9728 9.2577 -0.0434 47 1 11.3691 9.6464 -0.6904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131144073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:37 Heat of formation + Delta-G solvation = 15.240368 kcal Electronic energy + Delta-G solvation = -29524.814706 eV Core-core repulsion = 25273.231333 eV Total energy + Delta-G solvation = -4251.583373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.75739 -41.87105 -40.18619 -37.16262 -35.92804 -35.20190 -32.79511 -32.09981 -31.43912 -30.06348 -29.26484 -27.94529 -26.93416 -25.46833 -24.69718 -22.39833 -22.02798 -20.85006 -20.38409 -20.10648 -19.29244 -18.06314 -17.21960 -16.98064 -16.51686 -15.90834 -15.78107 -15.25618 -15.11323 -14.82178 -14.53897 -14.14468 -14.04857 -13.89154 -13.69312 -13.53472 -13.43409 -13.10872 -12.82981 -12.53939 -12.36367 -12.07438 -11.96714 -11.70418 -11.63220 -11.54974 -11.20650 -11.05427 -11.05054 -10.88874 -10.74337 -10.39246 -10.13959 -10.09889 -9.95853 -9.71472 -9.66522 -9.52250 -9.44255 -9.15948 -8.74120 -7.01583 -5.73852 -3.16056 1.70381 2.35088 2.72807 2.97837 3.35637 3.38563 3.43120 3.44662 3.98878 4.28318 4.38189 4.42495 4.51771 4.76524 4.87063 4.92692 4.98747 5.09871 5.10486 5.15963 5.21981 5.33594 5.41619 5.43536 5.47457 5.49024 5.53140 5.55947 5.64414 5.71671 5.77533 5.86162 5.95247 6.02602 6.15108 6.19018 6.34622 6.59729 6.79794 6.83118 7.11963 7.25099 7.32852 7.51930 7.73109 7.88959 8.23288 8.47346 9.11156 9.71467 10.31030 11.30798 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002527 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.618789 B =11076.504333 C =12294.307586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.110 4.110 4 H 0.100 0.900 5 C -0.147 4.147 6 C 0.520 3.480 7 O -0.538 6.538 8 N -0.724 5.724 9 C 0.207 3.793 10 C 0.239 3.761 11 N -0.520 5.520 12 C 0.230 3.770 13 C 0.243 3.757 14 H 0.072 0.928 15 C -0.140 4.140 16 C 0.058 3.942 17 H 0.084 0.916 18 F -0.210 7.210 19 C 0.131 3.869 20 N -0.574 5.574 21 C -0.219 4.219 22 H 0.076 0.924 23 C -0.004 4.004 24 N -0.919 5.919 25 Si 0.917 3.083 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.283 1.283 29 N -0.269 5.269 30 N -0.483 5.483 31 H 0.434 0.566 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.405 0.595 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.034 0.966 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.777 -11.164 5.047 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.118 0.882 5 C -0.204 4.204 6 C 0.307 3.693 7 O -0.414 6.414 8 N -0.378 5.378 9 C 0.081 3.919 10 C -0.041 4.041 11 N -0.249 5.249 12 C -0.055 4.055 13 C 0.130 3.870 14 H 0.090 0.910 15 C -0.180 4.180 16 C 0.020 3.980 17 H 0.102 0.898 18 F -0.191 7.191 19 C 0.006 3.994 20 N -0.297 5.297 21 C -0.347 4.347 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.566 5.566 25 Si 0.747 3.253 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.209 1.209 29 N -0.096 5.096 30 N -0.203 5.203 31 H 0.278 0.722 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.240 0.760 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.140 0.860 46 H 0.052 0.948 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.832 -11.279 5.003 22.514 hybrid contribution 0.792 -0.495 0.737 1.190 sum -18.040 -11.774 5.740 22.294 Atomic orbital electron populations 1.21850 0.95407 1.01971 1.01935 1.21348 0.95409 0.93985 1.03601 1.21366 0.91301 0.99693 1.00797 0.88194 1.21845 1.02592 1.00195 0.95783 1.20726 0.90098 0.83080 0.75406 1.90723 1.70288 1.31277 1.49087 1.45981 1.06765 1.09458 1.75552 1.19511 0.80385 0.87160 1.04858 1.23931 0.99188 0.96230 0.84742 1.70387 1.22791 1.02922 1.28824 1.25984 0.93920 0.94697 0.90894 1.19467 0.87505 0.86090 0.93904 0.91013 1.23129 0.97316 0.94884 1.02650 1.23068 1.00832 0.95494 0.78586 0.89811 1.92763 1.96859 1.92901 1.36577 1.22610 0.92729 0.87609 0.96422 1.44481 0.99581 1.08393 1.77196 1.18963 0.81660 0.95686 1.38411 0.90633 1.24758 0.97955 0.96317 1.00949 1.69730 1.27211 1.08547 1.51162 0.86045 0.83495 0.78279 0.77475 1.21302 1.21571 1.20897 1.78293 1.21783 0.95874 1.13694 1.48264 1.49991 1.11159 1.10850 0.72166 0.92437 0.92604 0.92421 0.90991 0.91292 0.90985 0.91980 0.92180 0.76023 0.87805 0.89350 0.90262 0.90227 0.86030 0.94794 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.15 0.36 -0.46 16 2 C -0.11 -0.76 4.75 -26.73 -0.13 -0.88 16 3 C -0.11 -0.76 2.72 -91.77 -0.25 -1.01 16 4 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -0.78 8.84 37.16 0.33 -0.45 16 6 C 0.52 5.15 7.15 -10.99 -0.08 5.07 16 7 O -0.54 -7.28 15.92 5.55 0.09 -7.20 16 8 N -0.72 -6.62 5.44 -61.47 -0.33 -6.95 16 9 C 0.21 2.24 6.30 -5.19 -0.03 2.21 16 10 C 0.24 3.39 7.60 -155.69 -1.18 2.21 16 11 N -0.52 -9.31 11.19 -8.16 -0.09 -9.40 16 12 C 0.23 4.63 6.56 -156.86 -1.03 3.60 16 13 C 0.24 5.14 3.67 -68.10 -0.25 4.89 16 14 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 15 C -0.14 -2.45 6.28 -24.90 -0.16 -2.61 16 16 C 0.06 1.10 4.86 -24.58 -0.12 0.98 16 17 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 18 F -0.21 -4.38 17.24 2.25 0.04 -4.34 16 19 C 0.13 3.12 5.70 -2.53 -0.01 3.10 16 20 N -0.57 -14.43 3.10 -163.87 -0.51 -14.94 16 21 C -0.22 -6.10 9.95 -15.06 -0.15 -6.25 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 24 N -0.92 -26.38 10.09 55.49 0.56 -25.82 16 25 Si 0.92 22.41 29.55 -169.99 -5.02 17.39 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 29 N -0.27 -5.32 12.77 32.42 0.41 -4.91 16 30 N -0.48 -7.05 7.45 32.62 0.24 -6.80 16 31 H 0.43 4.68 8.96 -182.34 -1.63 3.04 16 32 H 0.06 0.26 6.57 -51.93 -0.34 -0.08 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.61 7.95 -51.93 -0.41 0.20 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.29 7.57 -51.93 -0.39 -0.10 16 40 H 0.40 3.19 7.88 -40.82 -0.32 2.87 16 41 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.30 7.84 -51.93 -0.41 0.90 16 45 H 0.12 3.27 5.87 -51.93 -0.30 2.97 16 46 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -34.10 388.52 -9.91 -44.01 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.35 Total: 2.90 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -2.80 Total: 10.20 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: 0.28 Total: -68.82 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.20 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.10 -9.91 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131144073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.252 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds