Wall clock time and date at job start Tue Mar 31 2020 23:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47331 * 2 1 4 4 H 1.09001 * 109.46688 * 304.99945 * 3 2 1 5 5 C 1.52998 * 109.47078 * 65.00084 * 3 2 1 6 6 C 1.50697 * 109.47256 * 185.00253 * 3 2 1 7 7 O 1.21286 * 120.00060 * 0.02562 * 6 3 2 8 8 N 1.34778 * 119.99975 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99887 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.47322 * 180.02562 * 9 8 6 11 11 N 1.30838 * 125.95710 * 275.30408 * 10 9 8 12 12 C 1.33239 * 109.82337 * 180.11691 * 11 10 9 13 13 C 1.50702 * 125.52232 * 179.85363 * 12 11 10 14 14 H 1.08994 * 110.00256 * 343.62385 * 13 12 11 15 15 C 1.54327 * 109.88237 * 104.72510 * 13 12 11 16 16 C 1.55156 * 102.94181 * 141.60964 * 15 13 12 17 17 H 1.09003 * 110.99778 * 206.42172 * 16 15 13 18 18 F 1.39903 * 111.00358 * 82.61303 * 16 15 13 19 19 C 1.54908 * 101.58197 * 324.49449 * 16 15 13 20 20 N 1.47031 * 109.88194 * 222.53015 * 13 12 11 21 21 C 1.36934 * 125.64541 * 61.59557 * 20 13 12 22 22 H 1.07997 * 120.00156 * 0.02562 * 21 20 13 23 23 C 1.38816 * 119.99339 * 179.97438 * 21 20 13 24 24 N 1.31619 * 120.00310 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99553 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47173 * 90.00353 * 25 23 21 27 27 H 1.48504 * 109.47126 * 210.00364 * 25 23 21 28 28 H 1.48504 * 109.47363 * 330.00222 * 25 23 21 29 29 N 1.30707 * 108.95029 * 359.59669 * 12 11 10 30 30 N 1.34423 * 125.96332 * 94.97068 * 10 9 8 31 31 H 0.96997 * 126.82232 * 0.07562 * 30 10 9 32 32 H 1.09004 * 109.46922 * 300.00289 * 1 2 3 33 33 H 1.09004 * 109.47481 * 59.99868 * 1 2 3 34 34 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47364 * 239.99964 * 2 1 3 36 36 H 1.08996 * 109.47695 * 120.00266 * 2 1 3 37 37 H 1.08999 * 109.46774 * 300.00205 * 5 3 2 38 38 H 1.09006 * 109.47039 * 60.00451 * 5 3 2 39 39 H 1.09001 * 109.47018 * 180.02562 * 5 3 2 40 40 H 0.97001 * 120.00171 * 359.97438 * 8 6 3 41 41 H 1.08995 * 109.47660 * 60.00007 * 9 8 6 42 42 H 1.09006 * 109.47295 * 299.99788 * 9 8 6 43 43 H 1.09001 * 110.71763 * 259.97298 * 15 13 12 44 44 H 1.08997 * 110.72099 * 23.06335 * 15 13 12 45 45 H 1.09000 * 110.36459 * 155.84880 * 19 16 15 46 46 H 1.09001 * 110.36573 * 278.06223 * 19 16 15 47 47 H 0.97000 * 119.99728 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1450 0.3951 -0.2047 8 7 4.2149 2.6118 -0.1459 9 6 5.6748 2.6136 -0.2669 10 6 6.1773 4.0344 -0.2668 11 7 6.2543 4.8221 -1.3086 12 6 6.7460 6.0057 -0.9447 13 6 6.9857 7.1747 -1.8651 14 1 6.9787 6.8401 -2.9024 15 6 5.8935 8.2438 -1.6510 16 6 6.6813 9.5749 -1.7738 17 1 6.1923 10.3713 -1.2129 18 9 6.8465 9.9380 -3.1148 19 6 8.0376 9.1940 -1.1296 20 7 8.2779 7.8019 -1.5508 21 6 9.5017 7.1932 -1.6345 22 1 9.5722 6.1643 -1.9549 23 6 10.6516 7.8991 -1.3085 24 7 10.5656 9.1533 -0.9185 25 14 12.3211 7.0691 -1.4234 26 1 12.8817 7.2709 -2.7836 27 1 13.2386 7.6613 -0.4170 28 1 12.1703 5.6153 -1.1608 29 7 6.9816 5.9905 0.3408 30 7 6.6185 4.7155 0.8048 31 1 6.6754 4.3909 1.7170 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 0.5490 2.1252 1.3969 38 1 2.0700 1.5875 2.1492 39 1 1.9983 3.1543 1.3071 40 1 3.7325 3.4510 -0.0823 41 1 5.9629 2.1261 -1.1982 42 1 6.1099 2.0747 0.5749 43 1 5.1295 8.1750 -2.4254 44 1 5.4473 8.1465 -0.6614 45 1 8.8297 9.8446 -1.5004 46 1 7.9728 9.2577 -0.0434 47 1 11.3691 9.6464 -0.6904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131144073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:36 Heat of formation + Delta-G solvation = -7.977417 kcal Electronic energy + Delta-G solvation = -29525.821504 eV Core-core repulsion = 25273.231333 eV Total energy + Delta-G solvation = -4252.590172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.36734 -43.21122 -40.99499 -38.85670 -36.57004 -36.10281 -34.64369 -33.56560 -32.61673 -31.13959 -30.69881 -29.46851 -27.97260 -26.63413 -26.01601 -23.87282 -22.79906 -22.10717 -22.01429 -20.93647 -20.79270 -19.19883 -18.87141 -18.14351 -17.46703 -17.36902 -17.06318 -16.60695 -16.26160 -15.99629 -15.66781 -15.54198 -15.45979 -15.26450 -15.00601 -14.56024 -14.36040 -14.25261 -14.08999 -13.52349 -13.44788 -13.39118 -12.95662 -12.92458 -12.88563 -12.71217 -12.53853 -12.49791 -12.46537 -12.09612 -11.97544 -11.75513 -11.69724 -11.56696 -11.30377 -11.14664 -11.05783 -10.96180 -10.82051 -10.47944 -10.28532 -9.01044 -7.83446 -5.27267 0.47560 1.40753 1.42501 1.50072 1.56430 1.59663 1.72924 2.29012 2.43692 2.80634 3.28896 3.41740 3.54554 3.64921 3.71281 3.75398 3.87359 3.93398 3.99047 4.01219 4.19066 4.38702 4.41010 4.48814 4.56221 4.59358 4.64731 4.69042 4.75399 4.88240 4.99078 5.04492 5.13355 5.14722 5.16139 5.26090 5.33346 5.34433 5.39358 5.39859 5.51674 5.52908 5.71080 6.13785 6.24003 6.38848 7.03637 7.10581 7.12052 7.68371 8.29223 9.18662 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002527 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.618789 B =11076.504333 C =12294.307586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.104 4.104 4 H 0.117 0.883 5 C -0.143 4.143 6 C 0.520 3.480 7 O -0.577 6.577 8 N -0.714 5.714 9 C 0.213 3.787 10 C 0.263 3.737 11 N -0.545 5.545 12 C 0.221 3.779 13 C 0.234 3.766 14 H 0.058 0.942 15 C -0.123 4.123 16 C 0.066 3.934 17 H 0.126 0.874 18 F -0.221 7.221 19 C 0.133 3.867 20 N -0.593 5.593 21 C -0.225 4.225 22 H 0.064 0.936 23 C -0.056 4.056 24 N -0.941 5.941 25 Si 0.974 3.026 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.281 1.281 29 N -0.305 5.305 30 N -0.467 5.467 31 H 0.452 0.548 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.414 0.586 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.018 0.982 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.098 -11.869 5.735 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.125 4.125 4 H 0.135 0.865 5 C -0.201 4.201 6 C 0.309 3.691 7 O -0.456 6.456 8 N -0.368 5.368 9 C 0.086 3.914 10 C -0.016 4.016 11 N -0.275 5.275 12 C -0.064 4.064 13 C 0.123 3.877 14 H 0.076 0.924 15 C -0.162 4.162 16 C 0.029 3.971 17 H 0.144 0.856 18 F -0.202 7.202 19 C 0.008 3.992 20 N -0.316 5.316 21 C -0.354 4.354 22 H 0.082 0.918 23 C -0.249 4.249 24 N -0.590 5.590 25 Si 0.803 3.197 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.206 1.206 29 N -0.133 5.133 30 N -0.188 5.188 31 H 0.300 0.700 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.251 0.749 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.201 -11.991 5.709 25.017 hybrid contribution 1.464 -0.396 0.536 1.609 sum -19.737 -12.387 6.245 24.124 Atomic orbital electron populations 1.21822 0.93691 1.02387 1.02812 1.21327 0.96837 0.93993 1.02178 1.21410 0.88802 0.99870 1.02468 0.86501 1.21850 1.03637 1.00243 0.94344 1.21299 0.91282 0.82352 0.74208 1.90712 1.71279 1.32660 1.50980 1.45871 1.05922 1.09899 1.75097 1.19541 0.81589 0.84773 1.05453 1.24358 0.97027 0.96653 0.83611 1.70342 1.24075 1.02726 1.30335 1.25461 0.94991 0.95062 0.90932 1.19532 0.87103 0.87651 0.93371 0.92447 1.23093 0.96456 0.92137 1.04552 1.23074 0.98345 0.97722 0.77920 0.85638 1.92744 1.96838 1.93082 1.37511 1.22366 0.94505 0.86686 0.95656 1.44593 1.00260 1.09345 1.77442 1.19061 0.83324 0.95266 1.37788 0.91826 1.25471 1.00859 0.97040 1.01540 1.69958 1.27416 1.09416 1.52173 0.85157 0.79890 0.77372 0.77316 1.20973 1.21534 1.20630 1.78180 1.22858 0.98485 1.13793 1.48081 1.49094 1.09727 1.11913 0.70023 0.91265 0.91944 0.92343 0.92823 0.92420 0.89378 0.92607 0.91336 0.74945 0.88512 0.87352 0.87389 0.88660 0.89643 0.96447 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 71.98 0.70 -0.57 16 2 C -0.11 -1.38 4.75 30.59 0.15 -1.24 16 3 C -0.10 -1.21 2.72 -11.54 -0.03 -1.24 16 4 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.14 -1.11 8.84 71.98 0.64 -0.47 16 6 C 0.52 9.45 7.15 87.66 0.63 10.07 16 7 O -0.58 -15.22 15.92 -3.05 -0.05 -15.27 16 8 N -0.71 -11.48 5.44 -466.78 -2.54 -14.02 16 9 C 0.21 4.20 6.30 85.63 0.54 4.74 16 10 C 0.26 7.01 7.60 138.23 1.05 8.06 16 11 N -0.54 -18.92 11.19 -179.73 -2.01 -20.93 16 12 C 0.22 8.73 6.56 138.63 0.91 9.64 16 13 C 0.23 9.87 3.67 44.59 0.16 10.04 16 14 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.12 -4.05 6.28 31.78 0.20 -3.85 16 16 C 0.07 2.43 4.86 31.99 0.16 2.58 16 17 H 0.13 3.59 8.14 -2.39 -0.02 3.57 16 18 F -0.22 -8.97 17.24 44.97 0.78 -8.20 16 19 C 0.13 6.41 5.70 86.86 0.50 6.91 16 20 N -0.59 -30.34 3.10 -672.37 -2.08 -32.42 16 21 C -0.23 -12.84 9.95 84.03 0.84 -12.01 16 22 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 23 C -0.06 -3.20 5.49 84.86 0.47 -2.74 16 24 N -0.94 -55.58 10.09 21.65 0.22 -55.36 16 25 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 29 N -0.30 -11.79 12.77 -51.34 -0.66 -12.45 16 30 N -0.47 -12.81 7.45 -50.71 -0.38 -13.18 16 31 H 0.45 8.74 8.96 -213.10 -1.91 6.83 16 32 H 0.07 0.43 6.57 -2.38 -0.02 0.42 16 33 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.89 7.95 -2.39 -0.02 0.87 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.43 6.56 -2.39 -0.02 0.42 16 38 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.07 0.43 7.57 -2.39 -0.02 0.41 16 40 H 0.41 5.37 7.88 -92.71 -0.73 4.64 16 41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.09 2.86 7.84 -2.39 -0.02 2.84 16 45 H 0.09 4.76 5.87 -2.39 -0.01 4.75 16 46 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -76.41 388.52 0.57 -75.84 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -1.63 Total: 17.12 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 6.89 Total: 29.92 kcal Atomic # 7 Polarization: -140.92 SS G_CDS: -7.45 Total: -148.37 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.05 Total: -15.27 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 0.78 Total: -8.20 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -76.41 0.57 -75.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131144073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.862 kcal (2) G-P(sol) polarization free energy of solvation -76.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds