Wall clock time and date at job start Tue Mar 31 2020 23:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 C 1.53003 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47256 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00060 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99975 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99887 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47322 * 180.02562 * 8 7 5 10 10 N 1.30838 * 125.95710 * 275.30408 * 9 8 7 11 11 C 1.33239 * 109.82337 * 180.11691 * 10 9 8 12 12 C 1.50702 * 125.52232 * 179.85363 * 11 10 9 13 13 H 1.08994 * 110.00256 * 343.62385 * 12 11 10 14 14 C 1.54327 * 109.88237 * 104.72510 * 12 11 10 15 15 C 1.55156 * 102.94181 * 141.60964 * 14 12 11 16 16 H 1.09000 * 110.99867 * 206.38039 * 15 14 12 17 17 F 1.39896 * 111.00662 * 82.57142 * 15 14 12 18 18 C 1.54908 * 101.58197 * 324.49449 * 15 14 12 19 19 N 1.47031 * 109.88194 * 222.53015 * 12 11 10 20 20 C 1.36934 * 125.64541 * 61.59557 * 19 12 11 21 21 H 1.07997 * 120.00156 * 0.02562 * 20 19 12 22 22 C 1.38816 * 119.99339 * 179.97438 * 20 19 12 23 23 N 1.31619 * 120.00310 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99553 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47173 * 90.00353 * 24 22 20 26 26 H 1.48504 * 109.47126 * 210.00364 * 24 22 20 27 27 H 1.48504 * 109.47363 * 330.00222 * 24 22 20 28 28 N 1.30707 * 108.95029 * 359.59669 * 11 10 9 29 29 N 1.34423 * 125.96332 * 94.97068 * 9 8 7 30 30 H 0.96997 * 126.82232 * 0.07562 * 29 9 8 31 31 H 1.09005 * 109.46950 * 299.99788 * 1 2 3 32 32 H 1.08991 * 109.47363 * 60.00077 * 1 2 3 33 33 H 1.08999 * 109.47335 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47245 * 239.99983 * 2 1 3 35 35 H 1.09005 * 109.47498 * 120.00074 * 2 1 3 36 36 H 1.09005 * 109.46938 * 60.00205 * 3 2 1 37 37 H 1.08998 * 109.47494 * 300.00176 * 3 2 1 38 38 H 1.08998 * 109.47266 * 59.99878 * 4 3 2 39 39 H 1.09001 * 109.46688 * 299.99719 * 4 3 2 40 40 H 0.97001 * 120.00171 * 359.97438 * 7 5 4 41 41 H 1.08995 * 109.47660 * 60.00007 * 8 7 5 42 42 H 1.09006 * 109.47295 * 299.99788 * 8 7 5 43 43 H 1.09001 * 110.71763 * 259.97298 * 14 12 11 44 44 H 1.08997 * 110.72099 * 23.06335 * 14 12 11 45 45 H 1.09000 * 110.36459 * 155.84880 * 18 15 14 46 46 H 1.09001 * 110.36573 * 278.06223 * 18 15 14 47 47 H 0.97000 * 119.99728 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7851 0.0013 7 7 5.3974 3.1095 0.0001 8 6 5.8857 4.4907 0.0013 9 6 7.3927 4.4908 0.0005 10 7 8.1615 4.3919 1.0546 11 6 9.4413 4.4291 0.6856 12 6 10.6237 4.3457 1.6162 13 1 10.3063 4.5401 2.6406 14 6 11.2675 2.9463 1.5227 15 6 12.7851 3.2548 1.6184 16 1 13.3728 2.4821 1.1230 17 9 13.1829 3.4065 2.9510 18 6 12.8778 4.5995 0.8548 19 7 11.6455 5.3239 1.2152 20 6 11.4796 6.6828 1.1812 21 1 10.5331 7.1185 1.4653 22 6 12.5283 7.5002 0.7824 23 7 13.6819 6.9691 0.4366 24 14 12.3022 9.3539 0.7367 25 1 12.6799 9.9312 2.0517 26 1 13.1659 9.9318 -0.3241 27 1 10.8811 9.6722 0.4460 28 7 9.5048 4.5441 -0.6149 29 7 8.1816 4.5863 -1.0837 30 1 7.8941 4.6685 -2.0064 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9563 -0.8899 38 1 3.9330 0.9288 -0.8908 39 1 3.9337 0.9285 0.8892 40 1 6.0278 2.3723 0.0001 41 1 5.5225 5.0038 0.8917 42 1 5.5223 5.0054 -0.8883 43 1 10.9483 2.3186 2.3547 44 1 11.0265 2.4737 0.5705 45 1 13.7553 5.1595 1.1781 46 1 12.9158 4.4234 -0.2202 47 1 14.4145 7.5403 0.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131144717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:01 Heat of formation + Delta-G solvation = 10.781074 kcal Electronic energy + Delta-G solvation = -29027.202517 eV Core-core repulsion = 24775.425775 eV Total energy + Delta-G solvation = -4251.776743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.75865 -41.86896 -39.97137 -37.15919 -35.89339 -35.11757 -32.79776 -32.10100 -31.62982 -30.62844 -29.27021 -27.99425 -27.03088 -24.70107 -24.60368 -22.30642 -21.54256 -20.86734 -20.56186 -20.38259 -19.30078 -18.03134 -17.10424 -16.97223 -16.43948 -16.37912 -15.77627 -15.26961 -15.19966 -14.88088 -14.33024 -14.14633 -14.02707 -14.01784 -13.86075 -13.57823 -13.49905 -13.09625 -12.80036 -12.70272 -12.36536 -11.72609 -11.69800 -11.63392 -11.59458 -11.53937 -11.37092 -11.05417 -10.95256 -10.88894 -10.74321 -10.39565 -10.24180 -10.10216 -9.95920 -9.71884 -9.66691 -9.52373 -9.45071 -9.16281 -8.74113 -7.01523 -5.73809 -3.15993 1.70384 2.34936 2.73046 2.98024 3.35742 3.38599 3.43099 3.44631 3.98861 4.35485 4.42349 4.45387 4.55989 4.74644 4.85108 4.90330 4.91550 5.10048 5.10316 5.21527 5.26036 5.35367 5.41688 5.44297 5.46699 5.48359 5.53233 5.56848 5.64395 5.77036 5.77540 5.88055 5.94948 6.03282 6.15111 6.19053 6.34591 6.59666 6.79768 6.83054 7.11566 7.25049 7.32892 7.51953 7.73137 7.88918 8.23306 8.47266 9.11171 9.71486 10.31060 11.30801 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.002250 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.650214 B =12440.315519 C =13691.196910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.539 6.539 7 N -0.726 5.726 8 C 0.207 3.793 9 C 0.239 3.761 10 N -0.520 5.520 11 C 0.230 3.770 12 C 0.243 3.757 13 H 0.072 0.928 14 C -0.140 4.140 15 C 0.058 3.942 16 H 0.084 0.916 17 F -0.210 7.210 18 C 0.131 3.869 19 N -0.574 5.574 20 C -0.219 4.219 21 H 0.076 0.924 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.917 3.083 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.283 1.283 28 N -0.269 5.269 29 N -0.484 5.484 30 H 0.434 0.566 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.405 0.595 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.034 0.966 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.986 -15.349 -3.372 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.180 4.180 5 C 0.302 3.698 6 O -0.415 6.415 7 N -0.380 5.380 8 C 0.081 3.919 9 C -0.041 4.041 10 N -0.249 5.249 11 C -0.055 4.055 12 C 0.130 3.870 13 H 0.090 0.910 14 C -0.180 4.180 15 C 0.020 3.980 16 H 0.102 0.898 17 F -0.191 7.191 18 C 0.006 3.994 19 N -0.296 5.296 20 C -0.347 4.347 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.566 5.566 24 Si 0.747 3.253 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.209 1.209 28 N -0.096 5.096 29 N -0.203 5.203 30 H 0.278 0.722 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.240 0.760 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.140 0.860 46 H 0.052 0.948 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.783 -14.422 -3.406 23.148 hybrid contribution -0.186 0.820 -0.843 1.191 sum -17.969 -13.602 -4.249 22.934 Atomic orbital electron populations 1.21760 0.95674 1.01561 1.02055 1.21551 0.96189 0.96534 1.02052 1.21387 0.92505 0.96709 1.03736 1.21709 0.98267 0.93376 1.04665 1.20787 0.81486 0.92055 0.75432 1.90730 1.55122 1.46543 1.49129 1.46002 1.07546 1.08210 1.76219 1.19506 0.83022 0.84501 1.04878 1.23933 0.95199 1.00622 0.84341 1.70386 1.02111 1.23390 1.29044 1.25984 0.93089 0.95585 0.90833 1.19466 0.84000 0.89975 0.93526 0.91019 1.23129 0.95694 0.96424 1.02733 1.23068 0.94061 1.01886 0.78965 0.89809 1.92761 1.91900 1.97210 1.37231 1.22611 0.93441 0.87697 0.95628 1.44477 1.06845 1.01310 1.76997 1.18960 0.97894 0.79562 1.38286 0.90634 1.24761 0.95944 0.98372 1.00935 1.69730 1.02855 1.33174 1.50869 0.86042 0.77153 0.84661 0.77420 1.21309 1.21575 1.20906 1.78293 0.94002 1.24014 1.13337 1.48265 1.05226 1.56980 1.09810 0.72159 0.92611 0.92673 0.92777 0.91993 0.91890 0.91059 0.91190 0.88811 0.88586 0.76011 0.87821 0.89358 0.90263 0.90227 0.86032 0.94795 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.15 0.37 -0.46 16 2 C -0.13 -0.68 5.93 -26.74 -0.16 -0.83 16 3 C -0.11 -0.73 4.50 -26.73 -0.12 -0.85 16 4 C -0.14 -0.87 5.70 -27.88 -0.16 -1.03 16 5 C 0.52 4.93 7.83 -10.99 -0.09 4.85 16 6 O -0.54 -7.21 15.98 5.55 0.09 -7.12 16 7 N -0.73 -6.46 5.55 -61.47 -0.34 -6.80 16 8 C 0.21 2.22 6.30 -5.19 -0.03 2.19 16 9 C 0.24 3.38 7.60 -155.69 -1.18 2.19 16 10 N -0.52 -9.29 11.19 -8.16 -0.09 -9.38 16 11 C 0.23 4.63 6.56 -156.86 -1.03 3.60 16 12 C 0.24 5.13 3.67 -68.10 -0.25 4.88 16 13 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 14 C -0.14 -2.45 6.28 -24.90 -0.16 -2.61 16 15 C 0.06 1.09 4.86 -24.58 -0.12 0.98 16 16 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 17 F -0.21 -4.38 17.24 2.25 0.04 -4.34 16 18 C 0.13 3.11 5.70 -2.53 -0.01 3.10 16 19 N -0.57 -14.40 3.10 -163.87 -0.51 -14.91 16 20 C -0.22 -6.09 9.95 -15.06 -0.15 -6.24 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 23 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 24 Si 0.92 22.41 29.55 -169.99 -5.02 17.39 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 N -0.27 -5.32 12.77 32.42 0.41 -4.91 16 29 N -0.48 -7.04 7.45 32.62 0.24 -6.80 16 30 H 0.43 4.67 8.96 -182.34 -1.63 3.03 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.41 3.04 8.46 -40.82 -0.35 2.69 16 41 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.30 7.84 -51.93 -0.41 0.90 16 45 H 0.12 3.27 5.87 -51.93 -0.30 2.97 16 46 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -34.26 393.84 -10.45 -44.71 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.57 Total: 2.46 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -3.19 Total: 9.56 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: 0.28 Total: -68.59 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.26 -10.45 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131144717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.487 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds