Wall clock time and date at job start Tue Mar 31 2020 23:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 C 1.53003 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47256 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00060 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99975 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99887 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47322 * 180.02562 * 8 7 5 10 10 N 1.30838 * 125.95710 * 275.30408 * 9 8 7 11 11 C 1.33239 * 109.82337 * 180.11691 * 10 9 8 12 12 C 1.50702 * 125.52232 * 179.85363 * 11 10 9 13 13 H 1.08994 * 110.00256 * 343.62385 * 12 11 10 14 14 C 1.54327 * 109.88237 * 104.72510 * 12 11 10 15 15 C 1.55156 * 102.94181 * 141.60964 * 14 12 11 16 16 H 1.09000 * 110.99867 * 206.38039 * 15 14 12 17 17 F 1.39896 * 111.00662 * 82.57142 * 15 14 12 18 18 C 1.54908 * 101.58197 * 324.49449 * 15 14 12 19 19 N 1.47031 * 109.88194 * 222.53015 * 12 11 10 20 20 C 1.36934 * 125.64541 * 61.59557 * 19 12 11 21 21 H 1.07997 * 120.00156 * 0.02562 * 20 19 12 22 22 C 1.38816 * 119.99339 * 179.97438 * 20 19 12 23 23 N 1.31619 * 120.00310 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99553 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47173 * 90.00353 * 24 22 20 26 26 H 1.48504 * 109.47126 * 210.00364 * 24 22 20 27 27 H 1.48504 * 109.47363 * 330.00222 * 24 22 20 28 28 N 1.30707 * 108.95029 * 359.59669 * 11 10 9 29 29 N 1.34423 * 125.96332 * 94.97068 * 9 8 7 30 30 H 0.96997 * 126.82232 * 0.07562 * 29 9 8 31 31 H 1.09005 * 109.46950 * 299.99788 * 1 2 3 32 32 H 1.08991 * 109.47363 * 60.00077 * 1 2 3 33 33 H 1.08999 * 109.47335 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47245 * 239.99983 * 2 1 3 35 35 H 1.09005 * 109.47498 * 120.00074 * 2 1 3 36 36 H 1.09005 * 109.46938 * 60.00205 * 3 2 1 37 37 H 1.08998 * 109.47494 * 300.00176 * 3 2 1 38 38 H 1.08998 * 109.47266 * 59.99878 * 4 3 2 39 39 H 1.09001 * 109.46688 * 299.99719 * 4 3 2 40 40 H 0.97001 * 120.00171 * 359.97438 * 7 5 4 41 41 H 1.08995 * 109.47660 * 60.00007 * 8 7 5 42 42 H 1.09006 * 109.47295 * 299.99788 * 8 7 5 43 43 H 1.09001 * 110.71763 * 259.97298 * 14 12 11 44 44 H 1.08997 * 110.72099 * 23.06335 * 14 12 11 45 45 H 1.09000 * 110.36459 * 155.84880 * 18 15 14 46 46 H 1.09001 * 110.36573 * 278.06223 * 18 15 14 47 47 H 0.97000 * 119.99728 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7851 0.0013 7 7 5.3974 3.1095 0.0001 8 6 5.8857 4.4907 0.0013 9 6 7.3927 4.4908 0.0005 10 7 8.1615 4.3919 1.0546 11 6 9.4413 4.4291 0.6856 12 6 10.6237 4.3457 1.6162 13 1 10.3063 4.5401 2.6406 14 6 11.2675 2.9463 1.5227 15 6 12.7851 3.2548 1.6184 16 1 13.3728 2.4821 1.1230 17 9 13.1829 3.4065 2.9510 18 6 12.8778 4.5995 0.8548 19 7 11.6455 5.3239 1.2152 20 6 11.4796 6.6828 1.1812 21 1 10.5331 7.1185 1.4653 22 6 12.5283 7.5002 0.7824 23 7 13.6819 6.9691 0.4366 24 14 12.3022 9.3539 0.7367 25 1 12.6799 9.9312 2.0517 26 1 13.1659 9.9318 -0.3241 27 1 10.8811 9.6722 0.4460 28 7 9.5048 4.5441 -0.6149 29 7 8.1816 4.5863 -1.0837 30 1 7.8941 4.6685 -2.0064 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9563 -0.8899 38 1 3.9330 0.9288 -0.8908 39 1 3.9337 0.9285 0.8892 40 1 6.0278 2.3723 0.0001 41 1 5.5225 5.0038 0.8917 42 1 5.5223 5.0054 -0.8883 43 1 10.9483 2.3186 2.3547 44 1 11.0265 2.4737 0.5705 45 1 13.7553 5.1595 1.1781 46 1 12.9158 4.4234 -0.2202 47 1 14.4145 7.5403 0.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131144717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:00 Heat of formation + Delta-G solvation = -12.395751 kcal Electronic energy + Delta-G solvation = -29028.207540 eV Core-core repulsion = 24775.425775 eV Total energy + Delta-G solvation = -4252.781765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.36696 -43.20418 -40.77280 -38.85143 -36.50782 -35.93863 -34.64065 -33.56230 -32.69486 -31.39284 -31.10950 -29.51011 -28.09950 -26.63214 -25.21767 -23.83408 -22.15520 -22.06985 -21.96776 -21.32724 -20.89196 -19.21138 -18.86779 -17.99437 -17.43901 -17.29786 -17.07291 -16.99414 -16.19709 -15.98459 -15.85965 -15.60297 -15.30568 -15.19312 -14.96868 -14.56663 -14.50501 -14.34043 -14.09964 -13.56264 -13.44680 -13.39145 -13.21013 -12.90987 -12.87952 -12.71185 -12.46486 -12.16611 -12.09613 -12.05965 -11.97310 -11.83701 -11.75289 -11.41274 -11.30208 -11.18073 -11.06470 -11.00033 -10.83429 -10.49183 -10.26658 -9.00756 -7.83236 -5.26996 0.48415 1.40743 1.42505 1.50057 1.58155 1.62706 1.73629 2.31636 2.43884 2.81751 3.29122 3.42082 3.55432 3.68469 3.74713 3.78909 3.93281 3.96995 3.99662 4.10106 4.19382 4.37055 4.41234 4.49923 4.51629 4.59616 4.68483 4.69383 4.81502 4.88464 4.97708 5.03468 5.13318 5.15757 5.19709 5.32939 5.33840 5.34861 5.39555 5.42486 5.51887 5.54157 5.71260 6.14496 6.24175 6.42225 7.03790 7.11107 7.15944 7.68561 8.29429 9.18788 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.002250 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.650214 B =12440.315519 C =13691.196910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.133 4.133 5 C 0.515 3.485 6 O -0.581 6.581 7 N -0.716 5.716 8 C 0.213 3.787 9 C 0.263 3.737 10 N -0.545 5.545 11 C 0.221 3.779 12 C 0.234 3.766 13 H 0.058 0.942 14 C -0.123 4.123 15 C 0.066 3.934 16 H 0.126 0.874 17 F -0.221 7.221 18 C 0.133 3.867 19 N -0.593 5.593 20 C -0.225 4.225 21 H 0.064 0.936 22 C -0.057 4.057 23 N -0.940 5.940 24 Si 0.974 3.026 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.281 1.281 28 N -0.305 5.305 29 N -0.468 5.468 30 H 0.452 0.548 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.415 0.585 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.017 0.983 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 -17.367 -3.895 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.142 4.142 4 C -0.172 4.172 5 C 0.304 3.696 6 O -0.460 6.460 7 N -0.370 5.370 8 C 0.086 3.914 9 C -0.016 4.016 10 N -0.275 5.275 11 C -0.064 4.064 12 C 0.123 3.877 13 H 0.075 0.925 14 C -0.162 4.162 15 C 0.029 3.971 16 H 0.144 0.856 17 F -0.202 7.202 18 C 0.008 3.992 19 N -0.316 5.316 20 C -0.354 4.354 21 H 0.082 0.918 22 C -0.250 4.250 23 N -0.589 5.589 24 Si 0.803 3.197 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.207 1.207 28 N -0.134 5.134 29 N -0.189 5.189 30 H 0.300 0.700 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.252 0.748 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.035 0.965 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.214 -16.485 -3.943 25.622 hybrid contribution 0.117 1.435 -0.696 1.599 sum -19.097 -15.050 -4.639 24.753 Atomic orbital electron populations 1.21791 0.95994 1.01972 1.01619 1.21526 0.95928 0.95431 1.02984 1.21351 0.93205 0.97480 1.02201 1.21755 0.97472 0.91187 1.06812 1.21397 0.80992 0.93034 0.74144 1.90721 1.56082 1.48082 1.51128 1.45896 1.07718 1.07617 1.75807 1.19529 0.80423 0.85897 1.05518 1.24377 0.96154 0.97868 0.83226 1.70342 1.01587 1.24996 1.30579 1.25460 0.93496 0.96660 0.90834 1.19532 0.84086 0.91163 0.92879 0.92453 1.23093 0.93757 0.94617 1.04767 1.23073 0.96045 0.99997 0.77941 0.85640 1.92742 1.92144 1.97211 1.38082 1.22367 0.91834 0.89766 0.95264 1.44586 1.08608 1.01166 1.77237 1.19057 0.97283 0.81411 1.37629 0.91824 1.25478 0.95953 1.02025 1.01541 1.69959 1.03199 1.33929 1.51839 0.85151 0.76922 0.80370 0.77251 1.20995 1.21549 1.20653 1.78180 0.96662 1.25133 1.13392 1.48084 1.03732 1.56118 1.10929 0.70017 0.93196 0.93049 0.91921 0.90855 0.91059 0.92878 0.92581 0.86210 0.86621 0.74828 0.88608 0.87401 0.87382 0.88667 0.89644 0.96456 0.94061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.04 5.93 30.59 0.18 -0.86 16 3 C -0.10 -1.29 4.50 30.59 0.14 -1.15 16 4 C -0.13 -1.27 5.70 29.85 0.17 -1.10 16 5 C 0.52 8.81 7.83 87.66 0.69 9.49 16 6 O -0.58 -14.98 15.98 -3.05 -0.05 -15.03 16 7 N -0.72 -10.94 5.55 -466.78 -2.59 -13.52 16 8 C 0.21 4.13 6.30 85.63 0.54 4.67 16 9 C 0.26 6.97 7.60 138.23 1.05 8.02 16 10 N -0.54 -18.86 11.19 -179.73 -2.01 -20.87 16 11 C 0.22 8.72 6.56 138.63 0.91 9.63 16 12 C 0.23 9.86 3.67 44.59 0.16 10.02 16 13 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 14 C -0.12 -4.05 6.28 31.78 0.20 -3.85 16 15 C 0.07 2.42 4.86 31.99 0.16 2.58 16 16 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 17 F -0.22 -8.97 17.24 44.97 0.78 -8.19 16 18 C 0.13 6.40 5.70 86.86 0.50 6.89 16 19 N -0.59 -30.27 3.10 -672.37 -2.08 -32.35 16 20 C -0.22 -12.79 9.95 84.03 0.84 -11.96 16 21 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 23 N -0.94 -55.53 10.09 21.65 0.22 -55.31 16 24 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 25 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 28 N -0.31 -11.80 12.77 -51.34 -0.66 -12.46 16 29 N -0.47 -12.78 7.45 -50.71 -0.38 -13.16 16 30 H 0.45 8.69 8.96 -213.10 -1.91 6.78 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 37 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 38 H 0.12 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.42 4.91 8.46 -92.71 -0.78 4.13 16 41 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.09 2.85 7.84 -2.39 -0.02 2.84 16 45 H 0.09 4.76 5.87 -2.39 -0.01 4.74 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -76.99 393.84 0.27 -76.72 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -1.69 Total: 16.37 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 6.70 Total: 28.83 kcal Atomic # 7 Polarization: -140.17 SS G_CDS: -7.50 Total: -147.67 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.05 Total: -15.03 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 0.78 Total: -8.19 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -76.99 0.27 -76.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131144717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.327 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds