Wall clock time and date at job start Tue Mar 31 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 H 1.09003 * 109.46685 * 305.00467 * 5 4 2 7 7 C 1.52990 * 109.47256 * 185.00181 * 5 4 2 8 8 N 1.46503 * 109.46781 * 64.99835 * 5 4 2 9 9 C 1.34777 * 119.99652 * 204.99821 * 8 5 4 10 10 O 1.21279 * 120.00428 * 0.02562 * 9 8 5 11 11 C 1.50706 * 119.99486 * 180.02562 * 9 8 5 12 12 N 1.46503 * 109.46492 * 180.02562 * 11 9 8 13 13 C 1.34600 * 126.43530 * 125.00707 * 12 11 9 14 14 N 1.31066 * 106.68076 * 179.97438 * 13 12 11 15 15 N 1.28842 * 107.99170 * 359.97438 * 14 13 12 16 16 N 1.28742 * 109.39500 * 359.73357 * 15 14 13 17 17 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 18 18 C 1.46897 * 111.00133 * 275.00091 * 17 2 1 19 19 C 1.50705 * 109.47250 * 180.02562 * 18 17 2 20 20 O 1.21290 * 119.99690 * 359.97438 * 19 18 17 21 21 N 1.34770 * 119.99724 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99768 * 179.97438 * 21 19 18 23 23 H 1.08008 * 120.00079 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00393 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99836 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00366 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47327 * 90.00288 * 26 24 22 28 28 H 1.48505 * 109.47312 * 210.00387 * 26 24 22 29 29 H 1.48504 * 109.47055 * 330.00259 * 26 24 22 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 34 34 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 35 35 H 1.09005 * 109.47270 * 300.00259 * 7 5 4 36 36 H 1.08996 * 109.47456 * 60.00105 * 7 5 4 37 37 H 1.08996 * 109.47446 * 180.02562 * 7 5 4 38 38 H 0.96993 * 119.99849 * 25.00765 * 8 5 4 39 39 H 1.08991 * 109.47469 * 300.00306 * 11 9 8 40 40 H 1.09000 * 109.46507 * 60.01106 * 11 9 8 41 41 H 1.07998 * 126.66014 * 359.95780 * 13 12 11 42 42 H 1.00900 * 111.00095 * 38.95609 * 17 2 1 43 43 H 1.09003 * 109.46826 * 299.99875 * 18 17 2 44 44 H 1.08993 * 109.47326 * 59.99934 * 18 17 2 45 45 H 0.96996 * 120.00663 * 359.97438 * 21 19 18 46 46 H 0.97000 * 120.00384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1537 -1.3342 -0.1825 9 6 5.3748 -0.9911 0.2731 10 8 5.9860 -0.0853 -0.2530 11 6 5.9807 -1.7331 1.4366 12 7 7.3012 -1.1745 1.7375 13 6 7.7167 -0.7009 2.9269 14 7 8.9535 -0.3001 2.7610 15 7 9.2809 -0.5167 1.5338 16 7 8.2867 -1.0505 0.9140 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2225 2.3469 19 6 2.5886 -0.5216 3.5557 20 8 2.8689 -1.6985 3.4699 21 7 2.7297 0.1208 4.7321 22 6 3.1896 -0.5563 5.8319 23 1 3.4392 -1.6044 5.7556 24 6 3.3356 0.1059 7.0447 25 7 3.0324 1.3813 7.1376 26 14 3.9629 -0.8164 8.5430 27 1 5.4439 -0.7232 8.5975 28 1 3.3836 -0.2166 9.7719 29 1 3.5597 -2.2427 8.4509 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.7721 -2.2742 -2.6701 36 1 3.6263 -0.6887 -3.4658 37 1 5.1507 -1.1486 -2.6699 38 1 3.6648 -2.0585 0.2385 39 1 5.3356 -1.6301 2.3090 40 1 6.0817 -2.7881 1.1817 41 1 7.1424 -0.6590 3.8406 42 1 1.4497 -1.4979 1.4100 43 1 2.7589 1.0461 2.1182 44 1 1.0872 0.6162 2.5525 45 1 2.5059 1.0620 4.8007 46 1 3.1339 1.8436 7.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133616706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:57 Heat of formation + Delta-G solvation = 48.056263 kcal Electronic energy + Delta-G solvation = -30796.943297 eV Core-core repulsion = 26566.702889 eV Total energy + Delta-G solvation = -4230.240407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.90000 -39.91686 -38.62203 -37.45641 -35.41078 -34.85469 -34.06764 -32.26644 -31.95608 -31.39941 -30.46292 -28.59666 -27.02679 -26.36426 -24.10247 -23.58279 -23.45912 -21.70928 -20.93717 -20.34576 -19.42407 -18.07094 -17.72785 -17.58292 -16.43245 -16.19324 -16.07207 -15.62520 -15.32582 -15.28757 -14.79979 -14.68329 -14.24351 -13.99163 -13.92434 -13.64409 -13.24824 -13.17399 -12.87045 -12.58361 -12.37462 -12.34085 -12.29091 -12.02125 -11.88679 -11.72361 -11.58714 -11.42352 -11.17236 -10.98525 -10.94282 -10.89549 -10.84778 -10.52963 -10.37869 -10.16241 -9.72296 -9.67367 -9.04228 -8.63221 -8.20399 -8.13285 -6.57915 -4.00530 1.47975 2.05368 2.52290 2.62384 3.06418 3.18050 3.20825 3.21759 3.70230 3.93056 4.16986 4.40859 4.45393 4.56948 4.73965 4.79418 4.88849 4.96868 5.03092 5.10704 5.13811 5.15028 5.24151 5.34630 5.40818 5.56093 5.58658 5.65293 5.67231 5.68690 5.75566 5.86936 5.91179 5.96888 5.98844 6.08357 6.14070 6.30081 6.59071 7.01850 7.38243 7.46621 7.60096 7.87360 8.26779 8.40991 8.85689 8.99535 9.35544 9.84016 10.58997 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.004780 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.789675 B = 5856.562148 C = 8957.118029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.077 0.923 4 C -0.115 4.115 5 C 0.154 3.846 6 H 0.083 0.917 7 C -0.165 4.165 8 N -0.685 5.685 9 C 0.512 3.488 10 O -0.532 6.532 11 C 0.093 3.907 12 N -0.294 5.294 13 C 0.171 3.829 14 N -0.312 5.312 15 N -0.089 5.089 16 N -0.072 5.072 17 N -0.661 5.661 18 C 0.049 3.951 19 C 0.437 3.563 20 O -0.592 6.592 21 N -0.558 5.558 22 C -0.306 4.306 23 H 0.104 0.896 24 C 0.027 3.973 25 N -0.895 5.895 26 Si 0.927 3.073 27 H -0.275 1.275 28 H -0.283 1.283 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.237 0.763 42 H 0.348 0.652 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 -4.674 -14.063 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.050 3.950 6 H 0.101 0.899 7 C -0.223 4.223 8 N -0.337 5.337 9 C 0.294 3.706 10 O -0.408 6.408 11 C -0.032 4.032 12 N -0.096 5.096 13 C -0.128 4.128 14 N -0.160 5.160 15 N -0.083 5.083 16 N -0.059 5.059 17 N -0.293 5.293 18 C -0.084 4.084 19 C 0.223 3.777 20 O -0.478 6.478 21 N -0.193 5.193 22 C -0.436 4.436 23 H 0.122 0.878 24 C -0.176 4.176 25 N -0.536 5.536 26 Si 0.754 3.246 27 H -0.201 1.201 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.174 0.826 40 H 0.146 0.854 41 H 0.254 0.746 42 H 0.167 0.833 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.138 -4.367 -15.221 16.143 hybrid contribution -2.267 -0.098 1.927 2.977 sum -5.404 -4.465 -13.294 15.029 Atomic orbital electron populations 1.22506 0.97256 1.02209 1.02198 1.21633 0.92366 0.98277 0.90729 0.90466 1.21929 0.94231 1.01706 0.97473 1.20782 0.92036 0.97229 0.84992 0.89938 1.22209 1.02254 1.00984 0.96902 1.45652 1.16750 1.37821 1.33510 1.19959 0.82410 0.84253 0.83934 1.90794 1.61314 1.30173 1.58516 1.22102 0.79111 0.99410 1.02627 1.48118 1.12527 1.41032 1.07892 1.27893 0.93906 0.97878 0.93135 1.74974 1.10505 1.19771 1.10737 1.78582 1.18246 1.12744 0.98734 1.78893 0.92381 1.16106 1.18535 1.60272 1.57120 1.09288 1.02600 1.21691 0.99982 0.95763 0.90918 1.19759 0.85638 0.88162 0.84154 1.90469 1.56449 1.16022 1.84827 1.41917 1.56913 1.12510 1.07991 1.19656 1.40779 0.96373 0.86768 0.87793 1.25285 0.97272 0.95699 0.99330 1.69601 1.47605 1.08878 1.27469 0.85899 0.79030 0.79442 0.80214 1.20116 1.20876 1.19402 0.92526 0.92238 0.92323 0.91023 0.90240 0.92518 0.91900 0.92029 0.75126 0.82621 0.85407 0.74646 0.83254 0.90028 0.93883 0.77457 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.16 37.16 0.34 -1.10 16 2 C 0.08 0.71 2.59 -67.71 -0.18 0.53 16 3 H 0.08 0.76 7.80 -51.93 -0.40 0.36 16 4 C -0.11 -0.84 4.54 -26.73 -0.12 -0.96 16 5 C 0.15 1.47 2.57 -67.93 -0.17 1.29 16 6 H 0.08 0.98 7.58 -51.93 -0.39 0.59 16 7 C -0.17 -1.44 9.48 37.15 0.35 -1.09 16 8 N -0.68 -7.15 3.80 -53.80 -0.20 -7.36 16 9 C 0.51 6.89 7.81 -10.98 -0.09 6.80 16 10 O -0.53 -9.38 15.37 5.56 0.09 -9.30 16 11 C 0.09 1.12 6.97 -5.19 -0.04 1.08 16 12 N -0.29 -4.45 3.19 -63.74 -0.20 -4.65 16 13 C 0.17 2.59 12.79 -90.39 -1.16 1.43 16 14 N -0.31 -5.60 12.36 29.59 0.37 -5.24 16 15 N -0.09 -1.69 13.43 60.35 0.81 -0.87 16 16 N -0.07 -1.29 12.31 60.35 0.74 -0.55 16 17 N -0.66 -7.27 3.48 -107.99 -0.38 -7.65 16 18 C 0.05 0.69 5.97 -4.98 -0.03 0.66 16 19 C 0.44 8.28 7.82 -10.99 -0.09 8.19 16 20 O -0.59 -12.20 15.78 5.55 0.09 -12.11 16 21 N -0.56 -12.18 5.29 -10.96 -0.06 -12.23 16 22 C -0.31 -7.47 9.68 -14.93 -0.14 -7.62 16 23 H 0.10 2.62 7.16 -52.48 -0.38 2.25 16 24 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 25 N -0.90 -22.63 13.05 55.50 0.72 -21.91 16 26 Si 0.93 19.31 29.55 -169.99 -5.02 14.29 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 28 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 30 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.41 3.88 7.59 -40.82 -0.31 3.57 16 39 H 0.16 1.89 8.08 -51.93 -0.42 1.47 16 40 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.24 2.85 8.06 -52.49 -0.42 2.42 16 42 H 0.35 3.98 8.17 -39.29 -0.32 3.66 16 43 H 0.08 1.16 8.06 -51.93 -0.42 0.75 16 44 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 45 H 0.39 8.53 7.90 -40.82 -0.32 8.21 16 46 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -31.61 392.51 -5.22 -36.83 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -6.68 Total: 15.04 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -1.41 Total: 9.79 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 1.80 Total: -60.46 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.17 Total: -21.41 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.61 -5.22 -36.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133616706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.891 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds