Wall clock time and date at job start Tue Mar 31 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 H 1.09003 * 109.46685 * 305.00467 * 5 4 2 7 7 C 1.52990 * 109.47256 * 185.00181 * 5 4 2 8 8 N 1.46503 * 109.46781 * 64.99835 * 5 4 2 9 9 C 1.34777 * 119.99652 * 204.99821 * 8 5 4 10 10 O 1.21279 * 120.00428 * 0.02562 * 9 8 5 11 11 C 1.50706 * 119.99486 * 180.02562 * 9 8 5 12 12 N 1.46503 * 109.46492 * 180.02562 * 11 9 8 13 13 C 1.34600 * 126.43530 * 125.00707 * 12 11 9 14 14 N 1.31066 * 106.68076 * 179.97438 * 13 12 11 15 15 N 1.28842 * 107.99170 * 359.97438 * 14 13 12 16 16 N 1.28742 * 109.39500 * 359.73357 * 15 14 13 17 17 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 18 18 C 1.46897 * 111.00133 * 275.00091 * 17 2 1 19 19 C 1.50705 * 109.47250 * 180.02562 * 18 17 2 20 20 O 1.21290 * 119.99690 * 359.97438 * 19 18 17 21 21 N 1.34770 * 119.99724 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99768 * 179.97438 * 21 19 18 23 23 H 1.08008 * 120.00079 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00393 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99836 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00366 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47327 * 90.00288 * 26 24 22 28 28 H 1.48505 * 109.47312 * 210.00387 * 26 24 22 29 29 H 1.48504 * 109.47055 * 330.00259 * 26 24 22 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 34 34 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 35 35 H 1.09005 * 109.47270 * 300.00259 * 7 5 4 36 36 H 1.08996 * 109.47456 * 60.00105 * 7 5 4 37 37 H 1.08996 * 109.47446 * 180.02562 * 7 5 4 38 38 H 0.96993 * 119.99849 * 25.00765 * 8 5 4 39 39 H 1.08991 * 109.47469 * 300.00306 * 11 9 8 40 40 H 1.09000 * 109.46507 * 60.01106 * 11 9 8 41 41 H 1.07998 * 126.66014 * 359.95780 * 13 12 11 42 42 H 1.00900 * 111.00095 * 38.95609 * 17 2 1 43 43 H 1.09003 * 109.46826 * 299.99875 * 18 17 2 44 44 H 1.08993 * 109.47326 * 59.99934 * 18 17 2 45 45 H 0.96996 * 120.00663 * 359.97438 * 21 19 18 46 46 H 0.97000 * 120.00384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1537 -1.3342 -0.1825 9 6 5.3748 -0.9911 0.2731 10 8 5.9860 -0.0853 -0.2530 11 6 5.9807 -1.7331 1.4366 12 7 7.3012 -1.1745 1.7375 13 6 7.7167 -0.7009 2.9269 14 7 8.9535 -0.3001 2.7610 15 7 9.2809 -0.5167 1.5338 16 7 8.2867 -1.0505 0.9140 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2225 2.3469 19 6 2.5886 -0.5216 3.5557 20 8 2.8689 -1.6985 3.4699 21 7 2.7297 0.1208 4.7321 22 6 3.1896 -0.5563 5.8319 23 1 3.4392 -1.6044 5.7556 24 6 3.3356 0.1059 7.0447 25 7 3.0324 1.3813 7.1376 26 14 3.9629 -0.8164 8.5430 27 1 5.4439 -0.7232 8.5975 28 1 3.3836 -0.2166 9.7719 29 1 3.5597 -2.2427 8.4509 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.7721 -2.2742 -2.6701 36 1 3.6263 -0.6887 -3.4658 37 1 5.1507 -1.1486 -2.6699 38 1 3.6648 -2.0585 0.2385 39 1 5.3356 -1.6301 2.3090 40 1 6.0817 -2.7881 1.1817 41 1 7.1424 -0.6590 3.8406 42 1 1.4497 -1.4979 1.4100 43 1 2.7589 1.0461 2.1182 44 1 1.0872 0.6162 2.5525 45 1 2.5059 1.0620 4.8007 46 1 3.1339 1.8436 7.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133616706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:56 Heat of formation + Delta-G solvation = 25.152904 kcal Electronic energy + Delta-G solvation = -30797.936461 eV Core-core repulsion = 26566.702889 eV Total energy + Delta-G solvation = -4231.233572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.19063 -40.94205 -40.06734 -38.49596 -36.55321 -36.03309 -35.66621 -33.51750 -33.21836 -32.90690 -31.42127 -29.64186 -27.88482 -27.57332 -25.59084 -24.87128 -24.65300 -22.63788 -21.73149 -21.33927 -20.92500 -19.80932 -18.84072 -18.71341 -17.70024 -17.41693 -17.17934 -16.80310 -16.55743 -16.38530 -16.24582 -15.86344 -15.44495 -15.29360 -14.92757 -14.78002 -14.38946 -14.22600 -13.88021 -13.60308 -13.50016 -13.45120 -13.32645 -13.18627 -13.04102 -12.91476 -12.75049 -12.56717 -12.32305 -12.26344 -12.20803 -12.13181 -12.09139 -11.69598 -11.59214 -11.46251 -11.40388 -10.85204 -10.22329 -9.96181 -9.92912 -9.14906 -8.39891 -5.87122 0.23321 0.93887 1.18823 1.42790 1.48997 1.57268 1.58338 2.13304 2.24971 2.32793 2.99873 3.29736 3.32085 3.42021 3.61829 3.73495 3.80263 3.93575 4.06327 4.11945 4.29767 4.35733 4.39463 4.43040 4.52366 4.53661 4.64664 4.65870 4.67824 4.82646 4.87910 5.01070 5.04669 5.09337 5.13821 5.29405 5.33266 5.42455 5.49387 5.69815 5.97531 6.16590 6.55923 6.64940 6.66127 7.20087 7.30711 7.53590 7.65726 8.16722 8.77396 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.004780 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.789675 B = 5856.562148 C = 8957.118029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.082 3.918 3 H 0.066 0.934 4 C -0.103 4.103 5 C 0.152 3.848 6 H 0.056 0.944 7 C -0.158 4.158 8 N -0.668 5.668 9 C 0.507 3.493 10 O -0.579 6.579 11 C 0.092 3.908 12 N -0.288 5.288 13 C 0.177 3.823 14 N -0.337 5.337 15 N -0.115 5.115 16 N -0.085 5.085 17 N -0.659 5.659 18 C 0.064 3.936 19 C 0.447 3.553 20 O -0.603 6.603 21 N -0.577 5.577 22 C -0.319 4.319 23 H 0.092 0.908 24 C -0.013 4.013 25 N -0.925 5.925 26 Si 0.983 3.017 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.268 1.268 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.419 0.581 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.265 0.735 42 H 0.349 0.651 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.391 0.609 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 -5.993 -15.097 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.028 4.028 3 H 0.085 0.915 4 C -0.141 4.141 5 C 0.047 3.953 6 H 0.075 0.925 7 C -0.216 4.216 8 N -0.319 5.319 9 C 0.291 3.709 10 O -0.459 6.459 11 C -0.032 4.032 12 N -0.090 5.090 13 C -0.122 4.122 14 N -0.185 5.185 15 N -0.109 5.109 16 N -0.072 5.072 17 N -0.291 5.291 18 C -0.069 4.069 19 C 0.234 3.766 20 O -0.489 6.489 21 N -0.214 5.214 22 C -0.449 4.449 23 H 0.110 0.890 24 C -0.212 4.212 25 N -0.567 5.567 26 Si 0.808 3.192 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.192 1.192 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.258 0.742 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.280 0.720 42 H 0.169 0.831 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.224 0.776 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.038 -5.727 -16.290 17.988 hybrid contribution -1.808 0.251 2.109 2.789 sum -6.845 -5.476 -14.181 16.672 Atomic orbital electron populations 1.22432 0.95985 1.02778 1.02356 1.21674 0.93288 0.97711 0.90120 0.91549 1.21885 0.92060 1.02734 0.97438 1.20889 0.93637 0.95752 0.84985 0.92534 1.22139 1.00395 1.02187 0.96913 1.45648 1.15654 1.37406 1.33239 1.20195 0.82930 0.83759 0.84012 1.90782 1.62619 1.32321 1.60189 1.22376 0.77662 1.00914 1.02204 1.48294 1.12898 1.40330 1.07504 1.28366 0.93330 0.96607 0.93863 1.74898 1.12057 1.20845 1.10654 1.78549 1.19148 1.13901 0.99315 1.78821 0.92851 1.16387 1.19157 1.60277 1.57760 1.08944 1.02138 1.21482 1.00227 0.95496 0.89722 1.20581 0.83407 0.88072 0.84539 1.90455 1.56270 1.16900 1.85264 1.42016 1.58406 1.12500 1.08488 1.19671 1.41176 0.96040 0.87976 0.89010 1.25929 0.97606 0.96321 1.01384 1.69681 1.49177 1.09918 1.27875 0.85052 0.78508 0.78312 0.77330 1.19768 1.20951 1.19230 0.93771 0.90736 0.91518 0.89394 0.87941 0.90902 0.90185 0.94888 0.74198 0.82334 0.82006 0.71974 0.83084 0.90010 0.92680 0.77636 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.16 71.98 0.66 -1.54 16 2 C 0.08 1.21 2.59 44.92 0.12 1.32 16 3 H 0.07 1.17 7.80 -2.39 -0.02 1.15 16 4 C -0.10 -1.14 4.54 30.60 0.14 -1.00 16 5 C 0.15 2.60 2.57 44.99 0.12 2.71 16 6 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 7 C -0.16 -2.44 9.48 71.98 0.68 -1.75 16 8 N -0.67 -12.77 3.80 -442.52 -1.68 -14.45 16 9 C 0.51 13.26 7.81 87.66 0.68 13.94 16 10 O -0.58 -20.65 15.37 -3.03 -0.05 -20.69 16 11 C 0.09 2.10 6.97 85.63 0.60 2.69 16 12 N -0.29 -8.58 3.19 -355.56 -1.13 -9.72 16 13 C 0.18 5.28 12.79 180.27 2.31 7.58 16 14 N -0.34 -12.17 12.36 -60.30 -0.75 -12.91 16 15 N -0.11 -4.44 13.43 37.01 0.50 -3.94 16 16 N -0.08 -3.04 12.31 37.02 0.46 -2.59 16 17 N -0.66 -12.90 3.48 -495.57 -1.72 -14.63 16 18 C 0.06 1.67 5.97 85.56 0.51 2.18 16 19 C 0.45 16.40 7.82 87.66 0.69 17.08 16 20 O -0.60 -23.92 15.78 -3.06 -0.05 -23.96 16 21 N -0.58 -25.04 5.29 -306.98 -1.62 -26.66 16 22 C -0.32 -15.52 9.68 84.04 0.81 -14.71 16 23 H 0.09 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 25 N -0.93 -47.00 13.05 21.66 0.28 -46.71 16 26 Si 0.98 39.39 29.55 68.60 2.03 41.42 16 27 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 28 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 30 H 0.04 0.68 7.45 -2.39 -0.02 0.66 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.75 8.13 -2.39 -0.02 0.73 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.42 6.78 7.59 -92.71 -0.70 6.08 16 39 H 0.16 3.57 8.08 -2.39 -0.02 3.55 16 40 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.26 6.03 8.06 -2.91 -0.02 6.01 16 42 H 0.35 6.94 8.17 -89.69 -0.73 6.21 16 43 H 0.08 2.23 8.06 -2.39 -0.02 2.21 16 44 H 0.06 1.36 7.44 -2.39 -0.02 1.35 16 45 H 0.39 17.06 7.90 -92.71 -0.73 16.32 16 46 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 Total: -1.00 -69.86 392.51 2.91 -66.95 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -1.13 Total: 39.54 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 7.78 Total: 28.36 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.67 Total: -131.61 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.09 Total: -44.66 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -69.86 2.91 -66.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133616706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.107 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds