Wall clock time and date at job start Tue Mar 31 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.53004 * 109.47219 * 119.99752 * 2 1 3 5 5 C 1.52997 * 109.47236 * 185.00185 * 4 2 1 6 6 H 1.09002 * 109.47153 * 304.99767 * 5 4 2 7 7 C 1.53002 * 109.46817 * 184.99998 * 5 4 2 8 8 N 1.46505 * 109.47212 * 64.99775 * 5 4 2 9 9 C 1.34769 * 119.99686 * 204.99833 * 8 5 4 10 10 O 1.21275 * 120.00678 * 0.02562 * 9 8 5 11 11 C 1.50701 * 119.99690 * 179.97438 * 9 8 5 12 12 N 1.46495 * 109.47424 * 180.02562 * 11 9 8 13 13 N 1.28886 * 125.45210 * 89.99722 * 12 11 9 14 14 C 1.31036 * 107.91856 * 180.02562 * 13 12 11 15 15 N 1.33313 * 106.90282 * 0.02562 * 14 13 12 16 16 N 1.28784 * 125.45086 * 269.69789 * 12 11 9 17 17 N 1.46903 * 109.47413 * 239.99598 * 2 1 3 18 18 C 1.46899 * 110.99615 * 84.99971 * 17 2 1 19 19 C 1.50699 * 109.46864 * 180.02562 * 18 17 2 20 20 O 1.21296 * 120.00079 * 359.97438 * 19 18 17 21 21 N 1.34782 * 120.00291 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00256 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00190 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00144 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99626 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00121 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46839 * 89.99831 * 26 24 22 28 28 H 1.48499 * 109.47182 * 210.00006 * 26 24 22 29 29 H 1.48497 * 109.47339 * 330.00031 * 26 24 22 30 30 H 1.09002 * 109.47230 * 300.00190 * 1 2 3 31 31 H 1.09001 * 109.46752 * 59.99950 * 1 2 3 32 32 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46917 * 64.99618 * 4 2 1 34 34 H 1.09004 * 109.46741 * 305.00296 * 4 2 1 35 35 H 1.08996 * 109.47407 * 60.00219 * 7 5 4 36 36 H 1.09000 * 109.46986 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.47075 * 299.99262 * 7 5 4 38 38 H 0.97000 * 119.99634 * 25.00165 * 8 5 4 39 39 H 1.08996 * 109.47353 * 300.00507 * 11 9 8 40 40 H 1.09006 * 109.47337 * 60.00072 * 11 9 8 41 41 H 1.07997 * 126.54664 * 179.97438 * 14 13 12 42 42 H 1.00895 * 110.99880 * 321.05250 * 17 2 1 43 43 H 1.09002 * 109.47275 * 299.99787 * 18 17 2 44 44 H 1.08994 * 109.47105 * 60.00409 * 18 17 2 45 45 H 0.97004 * 119.99338 * 0.02562 * 21 19 18 46 46 H 0.97001 * 119.99692 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 1 3.9955 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4926 8 7 3.9480 0.7895 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4342 0.5733 11 6 5.5550 2.6566 1.2700 12 7 6.9097 2.8627 0.7518 13 7 7.2047 3.1960 -0.4578 14 6 8.5091 3.2855 -0.5446 15 7 8.9987 2.9929 0.6604 16 7 7.9961 2.7451 1.4333 17 7 2.0198 -0.6926 -1.1994 18 6 2.0825 0.2225 -2.3468 19 6 2.5875 -0.5220 -3.5559 20 8 2.8679 -1.6989 -3.4700 21 7 2.7284 0.1202 -4.7325 22 6 3.1883 -0.5569 -5.8323 23 1 3.4380 -1.6048 -5.7558 24 6 3.3341 0.1053 -7.0451 25 7 3.0307 1.3806 -7.1380 26 14 3.9613 -0.8171 -8.5434 27 1 2.8127 -1.3993 -9.2829 28 1 4.6968 0.1203 -9.4298 29 1 4.8731 -1.9056 -8.1088 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2616 2.1370 35 1 3.8001 -2.4818 2.3597 36 1 5.1715 -1.3616 2.5383 37 1 3.6546 -1.0591 3.4195 38 1 3.3284 1.4130 1.9028 39 1 4.8579 3.2952 0.7277 40 1 5.5290 2.9086 2.3302 41 1 9.0788 3.5457 -1.4244 42 1 1.4496 -1.4979 -1.4100 43 1 1.0871 0.6162 -2.5525 44 1 2.7589 1.0460 -2.1182 45 1 2.5052 1.0618 -4.8008 46 1 3.1329 1.8430 -7.9846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134380188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:03 Heat of formation + Delta-G solvation = 58.973217 kcal Electronic energy + Delta-G solvation = -29742.314566 eV Core-core repulsion = 25512.547553 eV Total energy + Delta-G solvation = -4229.767013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.39998 -40.20356 -38.50263 -37.39764 -35.40872 -34.98032 -33.87432 -33.16365 -32.06739 -31.22266 -30.53360 -29.08233 -26.98201 -26.23427 -24.04179 -23.97798 -23.68565 -21.84123 -21.00703 -20.58833 -19.26974 -18.33280 -18.09239 -17.86521 -16.55630 -16.42024 -16.04306 -15.63870 -15.41705 -15.33617 -14.74951 -14.61022 -14.18108 -14.03413 -13.90003 -13.84937 -13.65281 -13.22223 -13.03297 -12.82359 -12.48195 -12.35813 -12.17000 -12.07651 -12.04370 -11.56242 -11.48374 -11.27844 -11.20555 -11.03980 -11.03108 -10.93975 -10.85889 -10.71808 -10.37282 -10.19502 -10.02371 -9.48620 -9.31968 -8.45812 -8.04749 -7.93461 -6.39623 -3.80053 1.06972 1.61275 2.19609 2.22592 2.83725 3.19571 3.28159 3.34858 3.89744 3.92685 4.08705 4.16668 4.26876 4.32371 4.37811 4.50678 4.74249 4.82228 5.02279 5.11498 5.21935 5.24921 5.27592 5.37119 5.42853 5.56302 5.58828 5.62921 5.64972 5.72078 5.73097 5.87728 5.92976 5.98829 6.00867 6.08687 6.18893 6.27072 6.34417 7.12466 7.20809 7.57515 7.64220 7.85905 8.08490 8.27013 8.63415 9.20320 9.56403 10.07972 10.78220 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.007687 B = 0.003487 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.720411 B = 8028.451441 C =10776.203897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.075 0.925 4 C -0.112 4.112 5 C 0.145 3.855 6 H 0.113 0.887 7 C -0.163 4.163 8 N -0.713 5.713 9 C 0.502 3.498 10 O -0.507 6.507 11 C 0.109 3.891 12 N -0.128 5.128 13 N -0.294 5.294 14 C 0.147 3.853 15 N -0.286 5.286 16 N -0.055 5.055 17 N -0.661 5.661 18 C 0.054 3.946 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.269 1.269 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.398 0.602 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.237 0.763 42 H 0.350 0.650 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 6.756 21.406 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.030 4.030 3 H 0.093 0.907 4 C -0.151 4.151 5 C 0.042 3.958 6 H 0.130 0.870 7 C -0.221 4.221 8 N -0.366 5.366 9 C 0.284 3.716 10 O -0.380 6.380 11 C -0.016 4.016 12 N -0.039 5.039 13 N -0.143 5.143 14 C -0.156 4.156 15 N -0.157 5.157 16 N -0.049 5.049 17 N -0.293 5.293 18 C -0.079 4.079 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.232 0.768 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.253 0.747 42 H 0.170 0.830 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.693 5.404 21.679 22.406 hybrid contribution -1.099 0.828 -1.527 2.055 sum -2.792 6.232 20.152 21.278 Atomic orbital electron populations 1.22540 0.97389 1.02348 1.02074 1.21607 0.92218 0.98033 0.91157 0.90672 1.21882 0.93875 1.02400 0.96901 1.21097 0.94867 0.79235 1.00638 0.86957 1.22185 1.01850 1.00369 0.97737 1.45890 1.15752 1.12320 1.62649 1.20144 0.83125 0.88909 0.79416 1.90875 1.50508 1.55437 1.41209 1.21993 0.77830 0.98070 1.03678 1.49456 1.08621 1.41303 1.04515 1.74804 1.18338 1.18826 1.02318 1.27385 0.87877 1.01760 0.98587 1.75858 1.21367 1.16564 1.01911 1.78941 0.88519 1.15425 1.22025 1.60168 1.57495 1.09062 1.02543 1.21652 0.99574 0.95652 0.91015 1.19807 0.85173 0.88264 0.84161 1.90527 1.55233 1.16303 1.84575 1.41851 1.57811 1.12365 1.07979 1.19698 1.39911 0.96425 0.86752 0.87976 1.25246 0.97651 0.95757 0.99227 1.69613 1.48817 1.08825 1.27122 0.85868 0.78880 0.79025 0.80604 1.20452 1.20891 1.19384 0.92310 0.92473 0.92259 0.89907 0.91404 0.91363 0.92288 0.92833 0.76802 0.83745 0.83767 0.74708 0.83017 0.94022 0.90057 0.77557 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.16 37.16 0.34 -1.24 16 2 C 0.08 0.79 2.53 -67.71 -0.17 0.62 16 3 H 0.08 0.70 7.28 -51.93 -0.38 0.32 16 4 C -0.11 -0.90 4.43 -26.73 -0.12 -1.02 16 5 C 0.15 1.47 2.52 -67.93 -0.17 1.30 16 6 H 0.11 1.71 7.05 -51.93 -0.37 1.34 16 7 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 8 N -0.71 -5.65 4.45 -53.80 -0.24 -5.89 16 9 C 0.50 5.56 7.86 -10.99 -0.09 5.47 16 10 O -0.51 -8.76 16.09 5.56 0.09 -8.67 16 11 C 0.11 0.83 7.08 -5.20 -0.04 0.79 16 12 N -0.13 -1.59 3.49 -11.72 -0.04 -1.63 16 13 N -0.29 -4.06 12.13 29.34 0.36 -3.71 16 14 C 0.15 1.84 13.26 -91.59 -1.21 0.62 16 15 N -0.29 -4.06 12.50 29.33 0.37 -3.69 16 16 N -0.06 -0.77 13.25 60.35 0.80 0.03 16 17 N -0.66 -9.78 5.25 -107.99 -0.57 -10.34 16 18 C 0.05 0.92 5.97 -4.98 -0.03 0.90 16 19 C 0.44 10.51 7.82 -10.98 -0.09 10.43 16 20 O -0.58 -16.03 15.78 5.54 0.09 -15.95 16 21 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 22 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 26 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 32 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 1.52 8.60 -40.82 -0.35 1.17 16 39 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.24 1.92 8.06 -52.49 -0.42 1.49 16 42 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 43 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 44 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 45 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -39.11 396.18 -5.66 -44.77 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.67 Total: 12.74 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.46 Total: 8.60 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 1.34 Total: -63.90 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.18 Total: -24.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.11 -5.66 -44.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.744 kcal (2) G-P(sol) polarization free energy of solvation -39.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds