Wall clock time and date at job start Tue Mar 31 2020 22:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.53004 * 109.47219 * 119.99752 * 2 1 3 5 5 C 1.52997 * 109.47236 * 185.00185 * 4 2 1 6 6 H 1.09002 * 109.47153 * 304.99767 * 5 4 2 7 7 C 1.53002 * 109.46817 * 184.99998 * 5 4 2 8 8 N 1.46505 * 109.47212 * 64.99775 * 5 4 2 9 9 C 1.34769 * 119.99686 * 204.99833 * 8 5 4 10 10 O 1.21275 * 120.00678 * 0.02562 * 9 8 5 11 11 C 1.50701 * 119.99690 * 179.97438 * 9 8 5 12 12 N 1.46495 * 109.47424 * 180.02562 * 11 9 8 13 13 N 1.28886 * 125.45210 * 89.99722 * 12 11 9 14 14 C 1.31036 * 107.91856 * 180.02562 * 13 12 11 15 15 N 1.33313 * 106.90282 * 0.02562 * 14 13 12 16 16 N 1.28784 * 125.45086 * 269.69789 * 12 11 9 17 17 N 1.46903 * 109.47413 * 239.99598 * 2 1 3 18 18 C 1.46899 * 110.99615 * 84.99971 * 17 2 1 19 19 C 1.50699 * 109.46864 * 180.02562 * 18 17 2 20 20 O 1.21296 * 120.00079 * 359.97438 * 19 18 17 21 21 N 1.34782 * 120.00291 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00256 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00190 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00144 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99626 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00121 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46839 * 89.99831 * 26 24 22 28 28 H 1.48499 * 109.47182 * 210.00006 * 26 24 22 29 29 H 1.48497 * 109.47339 * 330.00031 * 26 24 22 30 30 H 1.09002 * 109.47230 * 300.00190 * 1 2 3 31 31 H 1.09001 * 109.46752 * 59.99950 * 1 2 3 32 32 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46917 * 64.99618 * 4 2 1 34 34 H 1.09004 * 109.46741 * 305.00296 * 4 2 1 35 35 H 1.08996 * 109.47407 * 60.00219 * 7 5 4 36 36 H 1.09000 * 109.46986 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.47075 * 299.99262 * 7 5 4 38 38 H 0.97000 * 119.99634 * 25.00165 * 8 5 4 39 39 H 1.08996 * 109.47353 * 300.00507 * 11 9 8 40 40 H 1.09006 * 109.47337 * 60.00072 * 11 9 8 41 41 H 1.07997 * 126.54664 * 179.97438 * 14 13 12 42 42 H 1.00895 * 110.99880 * 321.05250 * 17 2 1 43 43 H 1.09002 * 109.47275 * 299.99787 * 18 17 2 44 44 H 1.08994 * 109.47105 * 60.00409 * 18 17 2 45 45 H 0.97004 * 119.99338 * 0.02562 * 21 19 18 46 46 H 0.97001 * 119.99692 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 1 3.9955 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4926 8 7 3.9480 0.7895 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4342 0.5733 11 6 5.5550 2.6566 1.2700 12 7 6.9097 2.8627 0.7518 13 7 7.2047 3.1960 -0.4578 14 6 8.5091 3.2855 -0.5446 15 7 8.9987 2.9929 0.6604 16 7 7.9961 2.7451 1.4333 17 7 2.0198 -0.6926 -1.1994 18 6 2.0825 0.2225 -2.3468 19 6 2.5875 -0.5220 -3.5559 20 8 2.8679 -1.6989 -3.4700 21 7 2.7284 0.1202 -4.7325 22 6 3.1883 -0.5569 -5.8323 23 1 3.4380 -1.6048 -5.7558 24 6 3.3341 0.1053 -7.0451 25 7 3.0307 1.3806 -7.1380 26 14 3.9613 -0.8171 -8.5434 27 1 2.8127 -1.3993 -9.2829 28 1 4.6968 0.1203 -9.4298 29 1 4.8731 -1.9056 -8.1088 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2616 2.1370 35 1 3.8001 -2.4818 2.3597 36 1 5.1715 -1.3616 2.5383 37 1 3.6546 -1.0591 3.4195 38 1 3.3284 1.4130 1.9028 39 1 4.8579 3.2952 0.7277 40 1 5.5290 2.9086 2.3302 41 1 9.0788 3.5457 -1.4244 42 1 1.4496 -1.4979 -1.4100 43 1 1.0871 0.6162 -2.5525 44 1 2.7589 1.0460 -2.1182 45 1 2.5052 1.0618 -4.8008 46 1 3.1329 1.8430 -7.9846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134380188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:02 Heat of formation + Delta-G solvation = 26.025794 kcal Electronic energy + Delta-G solvation = -29743.743274 eV Core-core repulsion = 25512.547553 eV Total energy + Delta-G solvation = -4231.195720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.34916 -41.08240 -40.20726 -38.53406 -36.44384 -35.96872 -35.82789 -34.13173 -33.34827 -32.94008 -31.57079 -29.85169 -27.96649 -27.62537 -25.69343 -24.99132 -24.64231 -22.67261 -21.85419 -21.44896 -21.10248 -19.94729 -19.18284 -18.93763 -17.79879 -17.48360 -17.14974 -16.80684 -16.55171 -16.39364 -16.21355 -16.01719 -15.53324 -15.30879 -14.98943 -14.87964 -14.77938 -14.37418 -14.07938 -13.69557 -13.60658 -13.54367 -13.34202 -13.17015 -12.97993 -12.96289 -12.82009 -12.65625 -12.44720 -12.26082 -12.15774 -12.05157 -12.04131 -11.71314 -11.69962 -11.66901 -11.52658 -10.93624 -10.36989 -10.13611 -10.03199 -9.21361 -8.48906 -5.97498 0.10713 0.87374 1.23252 1.35301 1.38939 1.41111 1.51859 2.03547 2.09612 2.27447 2.96545 3.17469 3.18329 3.45626 3.49539 3.55420 3.75723 3.91178 4.02235 4.08043 4.21289 4.32767 4.42561 4.46041 4.53393 4.58818 4.62157 4.71409 4.77252 4.78936 4.85375 4.92704 5.04488 5.07204 5.16223 5.27388 5.33364 5.38363 5.39952 5.54495 5.91670 6.17187 6.43911 6.48642 6.58268 7.10793 7.16552 7.29615 7.54044 8.10113 8.68595 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.007687 B = 0.003487 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.720411 B = 8028.451441 C =10776.203897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 H 0.087 0.913 4 C -0.102 4.102 5 C 0.147 3.853 6 H 0.055 0.945 7 C -0.156 4.156 8 N -0.690 5.690 9 C 0.498 3.502 10 O -0.580 6.580 11 C 0.102 3.898 12 N -0.122 5.122 13 N -0.320 5.320 14 C 0.145 3.855 15 N -0.312 5.312 16 N -0.069 5.069 17 N -0.678 5.678 18 C 0.073 3.927 19 C 0.434 3.566 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.075 0.925 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.268 1.268 28 H -0.269 1.269 29 H -0.277 1.277 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.423 0.577 39 H 0.180 0.820 40 H 0.193 0.807 41 H 0.268 0.732 42 H 0.342 0.658 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 8.576 23.033 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.030 4.030 3 H 0.105 0.895 4 C -0.140 4.140 5 C 0.043 3.957 6 H 0.073 0.927 7 C -0.214 4.214 8 N -0.344 5.344 9 C 0.282 3.718 10 O -0.459 6.459 11 C -0.020 4.020 12 N -0.035 5.035 13 N -0.169 5.169 14 C -0.158 4.158 15 N -0.183 5.183 16 N -0.063 5.063 17 N -0.310 5.310 18 C -0.060 4.060 19 C 0.222 3.778 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.093 0.907 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.814 3.186 27 H -0.193 1.193 28 H -0.193 1.193 29 H -0.202 1.202 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.104 0.896 38 H 0.262 0.738 39 H 0.198 0.802 40 H 0.210 0.790 41 H 0.284 0.716 42 H 0.161 0.839 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.229 0.771 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.659 7.286 23.363 24.745 hybrid contribution -0.569 0.226 -1.962 2.055 sum -4.228 7.512 21.401 23.072 Atomic orbital electron populations 1.22462 0.95781 1.02450 1.02991 1.21782 0.93451 0.98294 0.89442 0.89477 1.21858 0.91935 1.02553 0.97644 1.20881 0.96153 0.80241 0.98458 0.92655 1.22112 1.00091 1.00482 0.98756 1.45678 1.15253 1.12051 1.61397 1.20766 0.83040 0.89863 0.78135 1.90857 1.52733 1.57635 1.44685 1.22573 0.76459 0.95936 1.07033 1.49833 1.09666 1.40005 1.04016 1.74765 1.19048 1.19881 1.03238 1.28078 0.87872 1.00736 0.99120 1.75815 1.22074 1.17640 1.02723 1.78843 0.89111 1.15859 1.22488 1.60184 1.58699 1.09050 1.03105 1.21442 1.00513 0.95150 0.88874 1.21035 0.83406 0.88091 0.85298 1.90491 1.56653 1.18540 1.85477 1.41924 1.58354 1.12495 1.08255 1.19635 1.42378 0.95868 0.88677 0.90704 1.26004 0.97136 0.96619 1.01274 1.69665 1.48576 1.09564 1.28137 0.84968 0.78504 0.77842 0.77271 1.19283 1.19318 1.20190 0.89266 0.93617 0.92632 0.90339 0.86995 0.91502 0.95130 0.89591 0.73779 0.80244 0.79025 0.71643 0.83881 0.91554 0.89009 0.77051 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 9.16 71.98 0.66 -1.78 16 2 C 0.08 1.35 2.53 44.92 0.11 1.47 16 3 H 0.09 1.28 7.28 -2.39 -0.02 1.27 16 4 C -0.10 -1.33 4.43 30.59 0.14 -1.20 16 5 C 0.15 2.82 2.52 44.99 0.11 2.93 16 6 H 0.06 1.77 7.05 -2.39 -0.02 1.75 16 7 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 8 N -0.69 -9.33 4.45 -442.54 -1.97 -11.30 16 9 C 0.50 10.54 7.86 87.66 0.69 11.23 16 10 O -0.58 -20.90 16.09 -3.01 -0.05 -20.95 16 11 C 0.10 1.30 7.08 85.63 0.61 1.91 16 12 N -0.12 -2.93 3.49 -190.99 -0.67 -3.60 16 13 N -0.32 -8.71 12.13 -61.10 -0.74 -9.46 16 14 C 0.14 3.60 13.26 180.69 2.40 5.99 16 15 N -0.31 -8.92 12.50 -61.12 -0.76 -9.68 16 16 N -0.07 -1.91 13.25 37.02 0.49 -1.42 16 17 N -0.68 -19.81 5.25 -495.57 -2.60 -22.41 16 18 C 0.07 2.47 5.97 85.56 0.51 2.98 16 19 C 0.43 21.33 7.82 87.66 0.69 22.01 16 20 O -0.63 -36.01 15.78 -3.08 -0.05 -36.06 16 21 N -0.57 -30.36 5.29 -306.98 -1.62 -31.98 16 22 C -0.34 -19.76 9.68 84.04 0.81 -18.94 16 23 H 0.07 4.73 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 25 N -0.92 -50.38 13.05 21.66 0.28 -50.09 16 26 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.75 7.45 -2.39 -0.02 0.73 16 32 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.42 1.34 8.60 -92.71 -0.80 0.54 16 39 H 0.18 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.19 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.27 4.18 8.06 -2.91 -0.02 4.16 16 42 H 0.34 10.79 8.17 -89.70 -0.73 10.06 16 43 H 0.07 1.93 7.44 -2.39 -0.02 1.92 16 44 H 0.09 2.94 8.05 -2.39 -0.02 2.92 16 45 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 46 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -92.50 396.18 0.99 -91.51 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -1.22 Total: 34.79 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 7.87 Total: 24.45 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -7.59 Total: -139.94 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -0.10 Total: -57.01 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -92.50 0.99 -91.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.532 kcal (2) G-P(sol) polarization free energy of solvation -92.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds