Wall clock time and date at job start Tue Mar 31 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47129 * 2 1 4 4 C 1.52995 * 109.47498 * 239.99640 * 2 1 3 5 5 C 1.53004 * 109.47616 * 174.54656 * 4 2 1 6 6 H 1.09003 * 109.46676 * 54.62361 * 5 4 2 7 7 C 1.53004 * 109.47020 * 294.62865 * 5 4 2 8 8 N 1.46894 * 109.47274 * 174.62252 * 5 4 2 9 9 C 1.46902 * 111.00110 * 203.26126 * 8 5 4 10 10 C 1.50696 * 109.47014 * 180.02562 * 9 8 5 11 11 O 1.21291 * 120.00472 * 359.72487 * 10 9 8 12 12 N 1.34775 * 119.99791 * 180.02562 * 10 9 8 13 13 C 1.37106 * 119.99936 * 179.97438 * 12 10 9 14 14 H 1.07994 * 119.99857 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99796 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00360 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47019 * 90.00027 * 17 15 13 19 19 H 1.48504 * 109.47125 * 210.00164 * 17 15 13 20 20 H 1.48503 * 109.47239 * 330.00082 * 17 15 13 21 21 N 1.46505 * 109.47018 * 119.99436 * 2 1 3 22 22 C 1.34769 * 120.00050 * 273.55827 * 21 2 1 23 23 O 1.21286 * 120.00466 * 0.02562 * 22 21 2 24 24 C 1.50705 * 120.00209 * 179.97438 * 22 21 2 25 25 N 1.46492 * 109.47586 * 180.02562 * 24 22 21 26 26 N 1.28882 * 125.45220 * 90.00168 * 25 24 22 27 27 C 1.31035 * 107.91643 * 180.02562 * 26 25 24 28 28 N 1.33315 * 106.90673 * 359.97438 * 27 26 25 29 29 N 1.28783 * 125.44791 * 269.69539 * 25 24 22 30 30 H 1.08991 * 109.47405 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47573 * 300.00867 * 1 2 3 32 32 H 1.09001 * 109.47239 * 60.00207 * 1 2 3 33 33 H 1.09010 * 109.47196 * 54.54914 * 4 2 1 34 34 H 1.08995 * 109.47057 * 294.55257 * 4 2 1 35 35 H 1.08998 * 109.46533 * 299.99391 * 7 5 4 36 36 H 1.09000 * 109.47043 * 59.99857 * 7 5 4 37 37 H 1.08997 * 109.46570 * 179.97438 * 7 5 4 38 38 H 1.00900 * 111.00423 * 327.22106 * 8 5 4 39 39 H 1.08998 * 109.47117 * 59.99857 * 9 8 5 40 40 H 1.09003 * 109.46689 * 300.00253 * 9 8 5 41 41 H 0.96996 * 120.00219 * 359.97438 * 12 10 9 42 42 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 43 43 H 0.97001 * 119.99348 * 93.56033 * 21 2 1 44 44 H 1.09001 * 109.46880 * 300.00825 * 24 22 21 45 45 H 1.09002 * 109.46943 * 59.99951 * 24 22 21 46 46 H 1.08001 * 126.54902 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5639 -0.6037 -1.3196 6 1 3.9999 -0.9712 -0.3906 7 6 3.9535 0.8622 -1.5210 8 7 4.0652 -1.4028 -2.4456 9 6 5.4721 -1.7737 -2.2428 10 6 5.9503 -2.5903 -3.4156 11 8 5.1922 -2.8431 -4.3281 12 7 7.2187 -3.0448 -3.4478 13 6 7.6536 -3.7881 -4.5146 14 1 6.9798 -4.0098 -5.3289 15 6 8.9615 -4.2562 -4.5480 16 7 9.7816 -3.9861 -3.5574 17 14 9.5539 -5.2696 -6.0011 18 1 10.1135 -4.3669 -7.0389 19 1 10.6054 -6.2158 -5.5489 20 1 8.4138 -6.0319 -6.5707 21 7 2.0182 -0.6905 1.1963 22 6 2.1746 -0.0113 2.3498 23 8 1.9106 1.1715 2.3977 24 6 2.6763 -0.7217 3.5805 25 7 2.7578 0.2275 4.6933 26 7 1.8114 0.4809 5.5306 27 6 2.2523 1.3778 6.3780 28 7 3.5061 1.6616 6.0249 29 7 3.7886 0.9383 4.9947 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.5992 -0.2670 -2.1366 34 1 1.7585 -1.7732 -1.2016 35 1 3.5174 1.2296 -2.4499 36 1 3.5815 1.4551 -0.6854 37 1 5.0391 0.9459 -1.5707 38 1 3.4929 -2.2210 -2.5915 39 1 5.5651 -2.3605 -1.3290 40 1 6.0771 -0.8710 -2.1581 41 1 7.8238 -2.8460 -2.7163 42 1 10.6945 -4.3132 -3.5806 43 1 2.2291 -1.6366 1.1580 44 1 1.9897 -1.5275 3.8402 45 1 3.6649 -1.1364 3.3830 46 1 1.7045 1.8056 7.2047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134380189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:06 Heat of formation + Delta-G solvation = 59.014125 kcal Electronic energy + Delta-G solvation = -28789.483979 eV Core-core repulsion = 24559.718741 eV Total energy + Delta-G solvation = -4229.765239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.66206 -40.54717 -38.56070 -37.59808 -35.54977 -35.23359 -33.93165 -33.42867 -32.37542 -31.27320 -30.44288 -29.32457 -27.19886 -26.31000 -24.31480 -24.25372 -23.82385 -22.06702 -21.24093 -20.36769 -19.31348 -18.56639 -18.35044 -17.91094 -16.85019 -16.47264 -16.41496 -16.22345 -15.55806 -15.33294 -15.07522 -14.59119 -14.44979 -14.24114 -14.11152 -13.93803 -13.66861 -13.44376 -13.22881 -12.79371 -12.59087 -12.40409 -12.30338 -12.20620 -11.98192 -11.75635 -11.55805 -11.52304 -11.30949 -11.28697 -11.07756 -11.03242 -10.96905 -10.79252 -10.42188 -10.33877 -10.24899 -9.65172 -9.54228 -8.49653 -8.12984 -7.99552 -6.44913 -3.85961 0.81372 1.34421 1.88154 1.93788 2.54747 3.15462 3.24347 3.29732 3.64963 3.84255 3.87152 3.96700 4.02227 4.17574 4.20007 4.49298 4.55800 4.61684 4.78155 4.99170 5.04530 5.18004 5.21853 5.26881 5.30967 5.35001 5.37984 5.50682 5.59819 5.66312 5.68237 5.73053 5.78107 5.85871 5.94935 5.98214 6.03928 6.21938 6.33944 6.80617 7.18081 7.50477 7.52090 7.60995 8.01824 8.02920 8.57561 9.14529 9.50719 10.01906 10.72728 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.001977 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.949416 B =14158.013651 C =15546.687625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.098 0.902 4 C -0.129 4.129 5 C 0.084 3.916 6 H 0.040 0.960 7 C -0.144 4.144 8 N -0.664 5.664 9 C 0.052 3.948 10 C 0.440 3.560 11 O -0.584 6.584 12 N -0.563 5.563 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 N -0.713 5.713 22 C 0.506 3.494 23 O -0.518 6.518 24 C 0.108 3.892 25 N -0.127 5.127 26 N -0.303 5.303 27 C 0.146 3.854 28 N -0.284 5.284 29 N -0.046 5.046 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.348 0.652 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.404 0.596 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.114 5.779 17.615 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.116 0.884 4 C -0.167 4.167 5 C -0.026 4.026 6 H 0.058 0.942 7 C -0.202 4.202 8 N -0.297 5.297 9 C -0.081 4.081 10 C 0.225 3.775 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.366 5.366 22 C 0.288 3.712 23 O -0.393 6.393 24 C -0.017 4.017 25 N -0.039 5.039 26 N -0.153 5.153 27 C -0.158 4.158 28 N -0.155 5.155 29 N -0.040 5.040 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.168 0.832 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.239 0.761 44 H 0.164 0.836 45 H 0.167 0.833 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -16.968 6.832 16.232 24.455 hybrid contribution 0.387 -1.454 0.793 1.701 sum -16.581 5.378 17.025 24.366 Atomic orbital electron populations 1.22172 0.94710 1.02427 1.02859 1.21166 0.94150 0.98094 0.82758 0.88397 1.22095 0.95863 1.01247 0.97494 1.21512 0.93345 0.95402 0.92338 0.94228 1.21872 1.01913 0.94765 1.01636 1.60097 1.02360 1.26608 1.40669 1.21706 0.90491 0.99367 0.96526 1.19808 0.83552 0.85134 0.88969 1.90522 1.55131 1.61880 1.39265 1.41874 1.09919 1.46898 1.21312 1.19700 0.96012 1.27518 0.99712 0.87916 1.25271 0.95851 0.98371 0.98474 1.69609 1.06761 1.46276 1.31615 0.85855 0.78467 0.79297 0.80650 1.20364 1.20931 1.19429 1.45973 1.67235 1.13635 1.09749 1.20187 0.78714 0.87790 0.84465 1.90832 1.49305 1.14974 1.84182 1.22020 1.08070 0.89732 0.81868 1.49465 1.05969 1.28027 1.20392 1.74694 1.17782 1.19339 1.03456 1.27359 0.91658 0.95755 1.00986 1.75915 1.14464 1.18322 1.06769 1.79053 1.12593 1.02543 1.09848 0.92180 0.92188 0.91052 0.88834 0.91042 0.91735 0.92810 0.92545 0.83165 0.94048 0.89664 0.77478 0.91839 0.76075 0.83583 0.83287 0.74752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.50 37.15 0.35 -0.74 16 2 C 0.14 1.03 2.47 -67.93 -0.17 0.86 16 3 H 0.10 0.92 5.73 -51.93 -0.30 0.62 16 4 C -0.13 -0.99 4.28 -26.73 -0.11 -1.11 16 5 C 0.08 0.88 2.63 -67.71 -0.18 0.70 16 6 H 0.04 0.38 7.31 -51.93 -0.38 0.00 16 7 C -0.14 -1.61 9.16 37.16 0.34 -1.27 16 8 N -0.66 -9.64 5.93 -107.99 -0.64 -10.28 16 9 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 10 C 0.44 10.06 7.82 -10.99 -0.09 9.98 16 11 O -0.58 -15.43 15.78 5.55 0.09 -15.35 16 12 N -0.56 -13.98 5.29 -10.97 -0.06 -14.04 16 13 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 17 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 N -0.71 -4.08 4.45 -53.81 -0.24 -4.32 16 22 C 0.51 4.00 7.88 -10.99 -0.09 3.91 16 23 O -0.52 -6.64 16.07 5.55 0.09 -6.55 16 24 C 0.11 0.56 7.08 -5.20 -0.04 0.52 16 25 N -0.13 -1.21 3.49 -11.72 -0.04 -1.25 16 26 N -0.30 -2.95 12.13 29.34 0.36 -2.59 16 27 C 0.15 1.28 13.26 -91.59 -1.21 0.06 16 28 N -0.28 -3.29 12.50 29.33 0.37 -2.92 16 29 N -0.05 -0.55 13.25 60.35 0.80 0.25 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.07 0.48 8.02 -51.93 -0.42 0.06 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.55 6.47 -51.93 -0.34 0.22 16 37 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 38 H 0.35 5.10 8.00 -39.29 -0.31 4.79 16 39 H 0.04 0.60 8.06 -51.93 -0.42 0.19 16 40 H 0.09 1.36 7.32 -51.93 -0.38 0.98 16 41 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.40 1.18 8.62 -40.82 -0.35 0.83 16 44 H 0.15 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.15 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.24 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -37.47 393.32 -5.60 -43.08 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.49 Total: 9.94 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.46 Total: 5.84 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 1.27 Total: -58.65 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.18 Total: -21.89 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.47 -5.60 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.089 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds