Wall clock time and date at job start Tue Mar 31 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47129 * 2 1 4 4 C 1.52995 * 109.47498 * 239.99640 * 2 1 3 5 5 C 1.53004 * 109.47616 * 174.54656 * 4 2 1 6 6 H 1.09003 * 109.46676 * 54.62361 * 5 4 2 7 7 C 1.53004 * 109.47020 * 294.62865 * 5 4 2 8 8 N 1.46894 * 109.47274 * 174.62252 * 5 4 2 9 9 C 1.46902 * 111.00110 * 203.26126 * 8 5 4 10 10 C 1.50696 * 109.47014 * 180.02562 * 9 8 5 11 11 O 1.21291 * 120.00472 * 359.72487 * 10 9 8 12 12 N 1.34775 * 119.99791 * 180.02562 * 10 9 8 13 13 C 1.37106 * 119.99936 * 179.97438 * 12 10 9 14 14 H 1.07994 * 119.99857 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99796 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00360 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47019 * 90.00027 * 17 15 13 19 19 H 1.48504 * 109.47125 * 210.00164 * 17 15 13 20 20 H 1.48503 * 109.47239 * 330.00082 * 17 15 13 21 21 N 1.46505 * 109.47018 * 119.99436 * 2 1 3 22 22 C 1.34769 * 120.00050 * 273.55827 * 21 2 1 23 23 O 1.21286 * 120.00466 * 0.02562 * 22 21 2 24 24 C 1.50705 * 120.00209 * 179.97438 * 22 21 2 25 25 N 1.46492 * 109.47586 * 180.02562 * 24 22 21 26 26 N 1.28882 * 125.45220 * 90.00168 * 25 24 22 27 27 C 1.31035 * 107.91643 * 180.02562 * 26 25 24 28 28 N 1.33315 * 106.90673 * 359.97438 * 27 26 25 29 29 N 1.28783 * 125.44791 * 269.69539 * 25 24 22 30 30 H 1.08991 * 109.47405 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47573 * 300.00867 * 1 2 3 32 32 H 1.09001 * 109.47239 * 60.00207 * 1 2 3 33 33 H 1.09010 * 109.47196 * 54.54914 * 4 2 1 34 34 H 1.08995 * 109.47057 * 294.55257 * 4 2 1 35 35 H 1.08998 * 109.46533 * 299.99391 * 7 5 4 36 36 H 1.09000 * 109.47043 * 59.99857 * 7 5 4 37 37 H 1.08997 * 109.46570 * 179.97438 * 7 5 4 38 38 H 1.00900 * 111.00423 * 327.22106 * 8 5 4 39 39 H 1.08998 * 109.47117 * 59.99857 * 9 8 5 40 40 H 1.09003 * 109.46689 * 300.00253 * 9 8 5 41 41 H 0.96996 * 120.00219 * 359.97438 * 12 10 9 42 42 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 43 43 H 0.97001 * 119.99348 * 93.56033 * 21 2 1 44 44 H 1.09001 * 109.46880 * 300.00825 * 24 22 21 45 45 H 1.09002 * 109.46943 * 59.99951 * 24 22 21 46 46 H 1.08001 * 126.54902 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5639 -0.6037 -1.3196 6 1 3.9999 -0.9712 -0.3906 7 6 3.9535 0.8622 -1.5210 8 7 4.0652 -1.4028 -2.4456 9 6 5.4721 -1.7737 -2.2428 10 6 5.9503 -2.5903 -3.4156 11 8 5.1922 -2.8431 -4.3281 12 7 7.2187 -3.0448 -3.4478 13 6 7.6536 -3.7881 -4.5146 14 1 6.9798 -4.0098 -5.3289 15 6 8.9615 -4.2562 -4.5480 16 7 9.7816 -3.9861 -3.5574 17 14 9.5539 -5.2696 -6.0011 18 1 10.1135 -4.3669 -7.0389 19 1 10.6054 -6.2158 -5.5489 20 1 8.4138 -6.0319 -6.5707 21 7 2.0182 -0.6905 1.1963 22 6 2.1746 -0.0113 2.3498 23 8 1.9106 1.1715 2.3977 24 6 2.6763 -0.7217 3.5805 25 7 2.7578 0.2275 4.6933 26 7 1.8114 0.4809 5.5306 27 6 2.2523 1.3778 6.3780 28 7 3.5061 1.6616 6.0249 29 7 3.7886 0.9383 4.9947 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.5992 -0.2670 -2.1366 34 1 1.7585 -1.7732 -1.2016 35 1 3.5174 1.2296 -2.4499 36 1 3.5815 1.4551 -0.6854 37 1 5.0391 0.9459 -1.5707 38 1 3.4929 -2.2210 -2.5915 39 1 5.5651 -2.3605 -1.3290 40 1 6.0771 -0.8710 -2.1581 41 1 7.8238 -2.8460 -2.7163 42 1 10.6945 -4.3132 -3.5806 43 1 2.2291 -1.6366 1.1580 44 1 1.9897 -1.5275 3.8402 45 1 3.6649 -1.1364 3.3830 46 1 1.7045 1.8056 7.2047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134380189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:06 Heat of formation + Delta-G solvation = 28.246397 kcal Electronic energy + Delta-G solvation = -28790.818168 eV Core-core repulsion = 24559.718741 eV Total energy + Delta-G solvation = -4231.099428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.34957 -41.18889 -40.18424 -38.62453 -36.48049 -35.97174 -35.80395 -34.12497 -33.34799 -33.05945 -31.39978 -29.88444 -28.26743 -27.58882 -25.78779 -24.98891 -24.63742 -22.78190 -21.89559 -21.21905 -21.02048 -19.90610 -19.18621 -18.95149 -17.87302 -17.52340 -17.05166 -16.98503 -16.81092 -16.48938 -16.10142 -15.97804 -15.51524 -15.48176 -15.14967 -14.92287 -14.72851 -14.39474 -13.94734 -13.92234 -13.52220 -13.46770 -13.30276 -13.27154 -12.96654 -12.91588 -12.86370 -12.71823 -12.41153 -12.26712 -12.15400 -12.10374 -12.04443 -11.74552 -11.68193 -11.65894 -11.49776 -10.99589 -10.34528 -10.23031 -10.00770 -9.28981 -8.46134 -5.94746 0.10473 0.83246 1.25482 1.32117 1.38459 1.42527 1.54864 2.02067 2.06525 2.29362 2.88318 3.16815 3.21437 3.40420 3.48867 3.50279 3.78660 3.90750 3.92586 4.02919 4.11380 4.32016 4.35573 4.40255 4.48328 4.49746 4.62182 4.71188 4.73372 4.78323 4.85842 4.91950 4.92949 5.00855 5.07040 5.19770 5.29103 5.34833 5.41760 5.47055 5.92887 6.15087 6.32224 6.50709 6.60853 7.00726 7.13471 7.30817 7.57577 8.12586 8.71138 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.001977 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.949416 B =14158.013651 C =15546.687625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.118 4.118 5 C 0.087 3.913 6 H 0.057 0.943 7 C -0.143 4.143 8 N -0.679 5.679 9 C 0.067 3.933 10 C 0.438 3.562 11 O -0.622 6.622 12 N -0.574 5.574 13 C -0.332 4.332 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.920 5.920 17 Si 0.992 3.008 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.271 1.271 21 N -0.698 5.698 22 C 0.507 3.493 23 O -0.573 6.573 24 C 0.100 3.900 25 N -0.122 5.122 26 N -0.315 5.315 27 C 0.147 3.853 28 N -0.315 5.315 29 N -0.075 5.075 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.348 0.652 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.422 0.578 44 H 0.186 0.814 45 H 0.180 0.820 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.711 4.536 18.519 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.022 4.022 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.312 5.312 9 C -0.066 4.066 10 C 0.226 3.774 11 O -0.509 6.509 12 N -0.212 5.212 13 C -0.462 4.462 14 H 0.097 0.903 15 C -0.214 4.214 16 N -0.561 5.561 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.196 1.196 21 N -0.351 5.351 22 C 0.291 3.709 23 O -0.452 6.452 24 C -0.023 4.023 25 N -0.035 5.035 26 N -0.165 5.165 27 C -0.156 4.156 28 N -0.186 5.186 29 N -0.068 5.068 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.168 0.832 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.260 0.740 44 H 0.203 0.797 45 H 0.197 0.803 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -17.551 5.564 17.148 25.161 hybrid contribution 0.486 -1.041 0.493 1.251 sum -17.065 4.523 17.642 24.958 Atomic orbital electron populations 1.22110 0.94025 1.03238 1.02217 1.20982 0.94569 0.97031 0.83037 0.90650 1.21987 0.93677 1.02457 0.97462 1.21565 0.95121 0.93957 0.91548 0.92544 1.21856 1.00978 0.95660 1.01547 1.60049 1.01271 1.26879 1.43044 1.21541 0.91790 0.98838 0.94391 1.20911 0.82432 0.84134 0.89960 1.90491 1.55960 1.63131 1.41306 1.41953 1.10869 1.47339 1.21002 1.19659 0.96539 1.29540 1.00474 0.90270 1.26033 0.95470 0.98931 1.00935 1.69668 1.07092 1.46643 1.32740 0.84940 0.77950 0.77945 0.77591 1.19880 1.19574 1.19620 1.45835 1.66164 1.14355 1.08760 1.20605 0.77754 0.87154 0.85413 1.90818 1.51881 1.17435 1.85089 1.22526 1.10777 0.89294 0.79668 1.49810 1.05308 1.27693 1.20697 1.74680 1.18048 1.19887 1.03869 1.28165 0.90975 0.95024 1.01402 1.75867 1.16046 1.19228 1.07412 1.78973 1.13800 1.03551 1.10509 0.90574 0.93825 0.90751 0.89285 0.89092 0.92645 0.92036 0.93807 0.83158 0.91096 0.88816 0.77025 0.91337 0.74003 0.79714 0.80282 0.71080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.50 71.98 0.68 -1.17 16 2 C 0.15 1.89 2.47 44.99 0.11 2.00 16 3 H 0.08 1.37 5.73 -2.39 -0.01 1.35 16 4 C -0.12 -1.54 4.28 30.59 0.13 -1.41 16 5 C 0.09 1.63 2.63 44.92 0.12 1.75 16 6 H 0.06 0.90 7.31 -2.39 -0.02 0.88 16 7 C -0.14 -3.06 9.16 71.98 0.66 -2.40 16 8 N -0.68 -18.56 5.93 -495.57 -2.94 -21.50 16 9 C 0.07 2.11 5.97 85.56 0.51 2.62 16 10 C 0.44 19.98 7.82 87.66 0.69 20.66 16 11 O -0.62 -33.26 15.78 -3.06 -0.05 -33.31 16 12 N -0.57 -28.69 5.29 -306.99 -1.62 -30.31 16 13 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 14 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 15 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 16 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 17 Si 0.99 42.30 29.55 68.60 2.03 44.32 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 N -0.70 -6.22 4.45 -442.54 -1.97 -8.18 16 22 C 0.51 7.13 7.88 87.66 0.69 7.82 16 23 O -0.57 -14.54 16.07 -3.05 -0.05 -14.59 16 24 C 0.10 0.78 7.08 85.64 0.61 1.39 16 25 N -0.12 -2.16 3.49 -191.00 -0.67 -2.83 16 26 N -0.31 -5.70 12.13 -61.10 -0.74 -6.44 16 27 C 0.15 2.42 13.26 180.69 2.40 4.82 16 28 N -0.32 -7.23 12.50 -61.11 -0.76 -7.99 16 29 N -0.07 -1.73 13.25 37.02 0.49 -1.23 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.09 0.89 8.02 -2.39 -0.02 0.87 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.23 6.47 -2.39 -0.02 1.21 16 37 H 0.04 1.03 7.34 -2.39 -0.02 1.02 16 38 H 0.35 9.57 8.00 -89.69 -0.72 8.85 16 39 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 40 H 0.09 2.84 7.32 -2.39 -0.02 2.82 16 41 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 42 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 43 H 0.42 0.88 8.62 -92.71 -0.80 0.08 16 44 H 0.19 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.18 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.27 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -83.96 393.32 0.68 -83.29 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -1.20 Total: 29.40 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 7.87 Total: 18.09 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -7.93 Total: -127.20 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.10 Total: -47.90 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -83.96 0.68 -83.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.534 kcal (2) G-P(sol) polarization free energy of solvation -83.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds