Wall clock time and date at job start Tue Mar 31 2020 22:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 H 1.09003 * 109.46772 * 54.99753 * 5 4 2 7 7 C 1.52997 * 109.47131 * 175.00107 * 5 4 2 8 8 N 1.46496 * 109.46972 * 295.00263 * 5 4 2 9 9 C 1.34774 * 120.00165 * 154.99647 * 8 5 4 10 10 O 1.21702 * 119.99861 * 0.02562 * 9 8 5 11 11 C 1.46586 * 120.00393 * 179.97438 * 9 8 5 12 12 S 1.75830 * 125.45696 * 359.69605 * 11 9 8 13 13 C 1.70615 * 91.56352 * 179.97438 * 12 11 9 14 14 C 1.33815 * 110.95333 * 0.31086 * 13 12 11 15 15 C 1.36645 * 125.45965 * 179.97438 * 11 9 8 16 16 C 1.50704 * 123.35182 * 359.97438 * 15 11 9 17 17 N 1.46893 * 109.47678 * 79.99455 * 16 15 11 18 18 C 1.46903 * 110.99703 * 66.04490 * 17 16 15 19 19 C 1.46889 * 111.00347 * 190.00125 * 17 16 15 20 20 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 21 21 C 1.36939 * 119.99555 * 274.99680 * 20 2 1 22 22 H 1.07999 * 120.00498 * 0.02562 * 21 20 2 23 23 C 1.38813 * 119.99885 * 179.97438 * 21 20 2 24 24 N 1.31623 * 120.00026 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46953 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46786 * 120.00380 * 25 23 21 28 28 H 1.48498 * 109.47226 * 239.99908 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 33 33 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 34 34 H 1.08997 * 109.46822 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46769 * 299.99905 * 7 5 4 36 36 H 1.08997 * 109.47170 * 60.00271 * 7 5 4 37 37 H 0.97000 * 120.00608 * 334.99964 * 8 5 4 38 38 H 1.08004 * 124.52194 * 180.02562 * 13 12 11 39 39 H 1.07997 * 122.45051 * 179.78420 * 14 13 12 40 40 H 1.09003 * 109.47094 * 200.00098 * 16 15 11 41 41 H 1.09000 * 109.46828 * 319.99063 * 16 15 11 42 42 H 1.09002 * 109.47022 * 60.00429 * 18 17 16 43 43 H 1.09006 * 109.47259 * 180.02562 * 18 17 16 44 44 H 1.09004 * 109.47436 * 300.00462 * 18 17 16 45 45 H 1.09005 * 109.47455 * 60.00053 * 19 17 16 46 46 H 1.09007 * 109.47220 * 179.97438 * 19 17 16 47 47 H 1.09003 * 109.47185 * 299.99830 * 19 17 16 48 48 H 0.96998 * 120.00364 * 94.99433 * 20 2 1 49 49 H 0.96993 * 120.00204 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4383 -2.4926 8 7 3.9479 0.7893 -1.4925 9 6 5.1611 1.2135 -1.0868 10 8 5.9386 0.4312 -0.5724 11 6 5.5447 2.6169 -1.2662 12 16 4.5422 3.8629 -1.9968 13 6 5.7558 5.0399 -1.7669 14 6 6.8358 4.5061 -1.1845 15 6 6.7407 3.1651 -0.8972 16 6 7.8460 2.3778 -0.2417 17 7 8.5845 1.6255 -1.2647 18 6 9.2948 2.5333 -2.1755 19 6 9.5115 0.6679 -0.6472 20 7 2.0184 -0.6907 1.1961 21 6 2.1493 -0.0075 2.3757 22 1 1.8920 1.0403 2.4244 23 6 2.6115 -0.6620 3.5092 24 7 2.9245 -1.9391 3.4501 25 14 2.7906 0.2701 5.1181 26 1 2.3767 1.6824 4.9207 27 1 1.9295 -0.3578 6.1523 28 1 4.2075 0.2261 5.5605 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 5.1714 -1.3618 -2.5383 35 1 3.8000 -2.4820 -2.3595 36 1 3.6545 -1.0594 -3.4194 37 1 3.3285 1.4128 -1.9029 38 1 5.6662 6.0763 -2.0573 39 1 7.7173 5.0866 -0.9557 40 1 8.5255 3.0608 0.2683 41 1 7.4181 1.6837 0.4816 42 1 10.0021 3.1377 -1.6075 43 1 9.8328 1.9503 -2.9231 44 1 8.5762 3.1854 -2.6719 45 1 8.9506 -0.0362 -0.0325 46 1 10.0449 0.1240 -1.4269 47 1 10.2267 1.2047 -0.0239 48 1 2.2491 -1.6318 1.1526 49 1 3.2478 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134493682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:17 Heat of formation + Delta-G solvation = 10.289299 kcal Electronic energy + Delta-G solvation = -28478.141245 eV Core-core repulsion = 24760.263602 eV Total energy + Delta-G solvation = -3717.877643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.76428 -38.43142 -36.61704 -36.23437 -34.33096 -32.12311 -31.02164 -29.99252 -28.54312 -27.59476 -27.42183 -26.23625 -24.19437 -23.55615 -22.04530 -21.57990 -20.47400 -19.66335 -18.72201 -18.15851 -17.11577 -15.98392 -15.72652 -15.50066 -15.08698 -14.92909 -14.72194 -14.33251 -14.26708 -13.87823 -13.62537 -13.40037 -13.04535 -12.92124 -12.71237 -12.52543 -12.39786 -12.17536 -12.06458 -11.86808 -11.67055 -11.64061 -11.57736 -11.52824 -11.40952 -10.96919 -10.92888 -10.79289 -10.55265 -10.34698 -10.14766 -9.82210 -9.56594 -9.42469 -8.83373 -8.82400 -8.56961 -8.53806 -8.20072 -6.85707 -5.67449 -2.94871 0.57200 1.47577 1.85968 2.37155 3.48463 3.50482 3.53964 3.56097 3.60980 4.17959 4.67199 4.80185 4.96160 5.08522 5.16026 5.23597 5.28658 5.31722 5.43341 5.50464 5.55276 5.57474 5.62602 5.68547 5.78206 5.82858 5.85028 5.91841 5.96809 6.03508 6.06954 6.08302 6.20318 6.27040 6.33757 6.35550 6.45160 6.52304 6.64227 6.79948 6.88835 7.00981 7.08458 7.13260 7.15137 7.78684 7.88684 8.51000 8.65369 9.62494 10.20156 10.54563 11.55434 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.004060 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.315902 B = 6895.728054 C = 7540.594619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.148 3.852 6 H 0.107 0.893 7 C -0.160 4.160 8 N -0.715 5.715 9 C 0.589 3.411 10 O -0.501 6.501 11 C -0.227 4.227 12 S 0.190 5.810 13 C -0.239 4.239 14 C -0.141 4.141 15 C -0.031 4.031 16 C 0.113 3.887 17 N -0.526 5.526 18 C 0.023 3.977 19 C 0.030 3.970 20 N -0.720 5.720 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.900 3.100 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.388 0.612 38 H 0.165 0.835 39 H 0.139 0.861 40 H 0.037 0.963 41 H 0.105 0.895 42 H 0.020 0.980 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.019 0.981 48 H 0.383 0.617 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 11.577 -16.213 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.044 3.956 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.367 5.367 9 C 0.374 3.626 10 O -0.377 6.377 11 C -0.349 4.349 12 S 0.458 5.542 13 C -0.376 4.376 14 C -0.173 4.173 15 C -0.046 4.046 16 C -0.016 4.016 17 N -0.249 5.249 18 C -0.126 4.126 19 C -0.118 4.118 20 N -0.361 5.361 21 C -0.362 4.362 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.732 3.268 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.221 0.779 38 H 0.183 0.817 39 H 0.156 0.844 40 H 0.055 0.945 41 H 0.124 0.876 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.038 0.962 48 H 0.217 0.783 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.027 10.886 -16.607 20.751 hybrid contribution 1.829 1.245 1.815 2.862 sum 7.855 12.131 -14.792 20.680 Atomic orbital electron populations 1.22457 0.99568 1.00777 0.99737 1.20222 0.91522 0.95549 0.86576 0.93685 1.22179 0.93855 1.02212 0.98778 1.21015 0.94958 0.79705 0.99938 0.87506 1.22179 1.01752 1.00012 0.97934 1.45845 1.16010 1.11763 1.63048 1.16756 0.82123 0.85134 0.78620 1.90830 1.50538 1.54306 1.41979 1.24642 0.99539 0.98406 1.12292 1.82950 1.17479 0.97914 1.55841 1.25112 0.99174 1.04869 1.08489 1.19865 0.99902 0.94397 1.03088 1.19254 0.94337 0.93065 0.97986 1.20807 0.92116 0.95557 0.93139 1.61810 1.27014 1.17143 1.18978 1.22436 0.97356 0.96082 0.96695 1.22335 0.94726 0.95879 0.98831 1.42395 1.77939 1.10545 1.05254 1.19199 1.36087 0.93650 0.87303 0.91511 1.24670 1.02339 0.95910 0.97845 1.69655 1.51159 1.08585 1.28580 0.86212 0.77294 0.78810 0.84486 1.20724 1.22025 1.21966 0.92935 0.94735 0.93537 0.90566 0.92132 0.92277 0.91820 0.93276 0.77860 0.81698 0.84360 0.94532 0.87641 0.96145 0.91771 0.91554 0.90485 0.91699 0.96217 0.78334 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.29 2.84 -67.93 -0.19 3.10 16 3 H 0.05 0.90 7.56 -51.93 -0.39 0.50 16 4 C -0.13 -2.05 4.29 -26.73 -0.11 -2.16 16 5 C 0.15 2.45 2.52 -67.93 -0.17 2.28 16 6 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 7 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 8 N -0.72 -11.19 4.44 -55.14 -0.25 -11.43 16 9 C 0.59 10.34 7.74 -12.90 -0.10 10.24 16 10 O -0.50 -10.43 14.00 5.19 0.07 -10.36 16 11 C -0.23 -3.37 6.45 -36.79 -0.24 -3.60 16 12 S 0.19 2.08 22.16 -107.50 -2.38 -0.30 16 13 C -0.24 -2.36 10.92 29.18 0.32 -2.04 16 14 C -0.14 -1.56 9.17 -41.41 -0.38 -1.94 16 15 C -0.03 -0.44 4.54 -105.48 -0.48 -0.92 16 16 C 0.11 1.62 4.35 -4.98 -0.02 1.60 16 17 N -0.53 -7.20 4.84 -252.72 -1.22 -8.42 16 18 C 0.02 0.25 9.33 60.07 0.56 0.81 16 19 C 0.03 0.38 9.57 60.06 0.57 0.95 16 20 N -0.72 -17.76 4.49 -53.42 -0.24 -18.00 16 21 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 25 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.39 5.12 7.72 -40.82 -0.31 4.80 16 38 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 41 H 0.11 1.83 6.57 -51.93 -0.34 1.49 16 42 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 44 H 0.07 0.73 6.71 -51.93 -0.35 0.38 16 45 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 46 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 409.51 15.07 6.17 6.17 Total: -1.00 -32.73 409.51 -10.31 -43.04 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -8.39 Total: 12.31 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.22 Total: -3.23 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.98 Total: -65.69 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.38 Total: -0.30 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.73 -10.31 -43.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134493682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.331 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds