Wall clock time and date at job start Tue Mar 31 2020 22:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.52997 * 109.47083 * 239.99998 * 2 1 3 5 5 C 1.53005 * 109.47125 * 174.99962 * 4 2 1 6 6 H 1.08999 * 109.47053 * 55.00468 * 5 4 2 7 7 C 1.52997 * 109.46994 * 175.00181 * 5 4 2 8 8 N 1.46498 * 109.46972 * 295.00359 * 5 4 2 9 9 C 1.34776 * 120.00118 * 155.00303 * 8 5 4 10 10 O 1.21628 * 119.99730 * 359.97438 * 9 8 5 11 11 C 1.47252 * 120.00129 * 179.97438 * 9 8 5 12 12 N 1.30564 * 125.54172 * 180.29576 * 11 9 8 13 13 C 1.30694 * 115.90841 * 180.19663 * 12 11 9 14 14 C 1.50698 * 122.11242 * 179.76145 * 13 12 11 15 15 C 1.53006 * 109.47184 * 254.71684 * 14 13 12 16 16 C 1.52997 * 109.47342 * 134.71460 * 14 13 12 17 17 C 1.52999 * 109.47150 * 14.71127 * 14 13 12 18 18 C 1.34237 * 115.78263 * 359.49382 * 13 12 11 19 19 S 1.71069 * 109.08970 * 0.26736 * 18 13 12 20 20 N 1.46508 * 109.47129 * 120.00177 * 2 1 3 21 21 C 1.36934 * 120.00087 * 274.99806 * 20 2 1 22 22 H 1.07996 * 119.99976 * 0.02562 * 21 20 2 23 23 C 1.38813 * 119.99703 * 179.97438 * 21 20 2 24 24 N 1.31614 * 120.00420 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99520 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47313 * 59.99716 * 25 23 21 27 27 H 1.48496 * 109.46752 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46918 * 299.99919 * 25 23 21 29 29 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46840 * 299.99675 * 1 2 3 31 31 H 1.08999 * 109.47087 * 59.99362 * 1 2 3 32 32 H 1.09003 * 109.47089 * 55.00455 * 4 2 1 33 33 H 1.08998 * 109.47505 * 295.00004 * 4 2 1 34 34 H 1.09004 * 109.47030 * 179.97438 * 7 5 4 35 35 H 1.09002 * 109.47384 * 300.00016 * 7 5 4 36 36 H 1.09003 * 109.47459 * 60.00165 * 7 5 4 37 37 H 0.97004 * 120.00148 * 334.99374 * 8 5 4 38 38 H 1.09001 * 109.47002 * 299.99404 * 15 14 13 39 39 H 1.08993 * 109.46955 * 59.99842 * 15 14 13 40 40 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.47140 * 180.02562 * 16 14 13 42 42 H 1.09001 * 109.47230 * 299.99432 * 16 14 13 43 43 H 1.09001 * 109.47375 * 60.00270 * 16 14 13 44 44 H 1.09001 * 109.47362 * 300.00765 * 17 14 13 45 45 H 1.09002 * 109.46716 * 60.00124 * 17 14 13 46 46 H 1.09000 * 109.47486 * 180.02562 * 17 14 13 47 47 H 1.08002 * 125.45489 * 180.23864 * 18 13 12 48 48 H 0.97001 * 119.99557 * 95.00207 * 20 2 1 49 49 H 0.97001 * 120.00123 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4382 -2.4925 8 7 3.9479 0.7894 -1.4924 9 6 5.1612 1.2136 -1.0867 10 8 5.9378 0.4319 -0.5718 11 6 5.5464 2.6233 -1.2668 12 7 6.6909 3.1476 -0.9203 13 6 6.8318 4.4237 -1.1647 14 6 8.0932 5.1714 -0.8171 15 6 7.8464 6.0425 0.4164 16 6 8.5010 6.0589 -1.9948 17 6 9.2130 4.1721 -0.5199 18 6 5.7842 5.0253 -1.7499 19 16 4.5417 3.8746 -1.9918 20 7 2.0184 -0.6907 1.1962 21 6 2.1492 -0.0076 2.3758 22 1 1.8920 1.0401 2.4244 23 6 2.6114 -0.6622 3.5093 24 7 2.9244 -1.9392 3.4501 25 14 2.7892 0.2695 5.1186 26 1 1.4667 0.8064 5.5285 27 1 3.2982 -0.6489 6.1685 28 1 3.7445 1.3919 4.9378 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 5.1714 -1.3610 -2.5387 35 1 3.8001 -2.4819 -2.3595 36 1 3.6546 -1.0593 -3.4194 37 1 3.3284 1.4129 -1.9028 38 1 7.0487 6.7545 0.2046 39 1 7.5559 5.4102 1.2553 40 1 8.7589 6.5829 0.6680 41 1 9.4136 6.5994 -1.7436 42 1 8.6769 5.4384 -2.8735 43 1 7.7033 6.7709 -2.2065 44 1 8.9224 3.5398 0.3191 45 1 9.3888 3.5516 -1.3986 46 1 10.1252 4.7129 -0.2680 47 1 5.7336 6.0688 -2.0238 48 1 2.2491 -1.6318 1.1525 49 1 3.2470 -2.3967 4.2423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134657715.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:23 Heat of formation + Delta-G solvation = 1.675415 kcal Electronic energy + Delta-G solvation = -27873.182227 eV Core-core repulsion = 24154.931058 eV Total energy + Delta-G solvation = -3718.251169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59761 -39.39715 -36.90243 -36.05343 -34.48573 -32.21444 -31.10578 -30.00292 -28.58199 -27.65525 -27.46541 -26.36316 -25.88529 -23.61807 -23.07286 -20.91768 -20.27499 -19.74323 -19.16821 -18.10658 -17.20609 -16.79750 -16.01793 -15.55803 -15.38038 -14.76233 -14.58298 -14.13264 -14.07209 -13.94295 -13.73787 -13.58556 -13.35450 -12.97951 -12.70503 -12.48466 -12.41294 -12.27783 -12.14772 -12.02180 -11.82363 -11.73159 -11.61212 -11.13672 -11.11954 -11.04362 -10.98263 -10.78801 -10.61029 -10.44257 -10.24466 -10.22043 -9.90125 -9.79404 -9.58821 -9.55747 -8.94767 -8.84043 -8.75582 -6.89017 -5.69246 -2.97292 0.18692 1.07764 1.48010 2.34474 2.96478 3.37678 3.48931 3.54093 3.54272 4.14428 4.55657 4.65864 4.71550 4.78201 4.92319 5.02337 5.12233 5.15753 5.35882 5.37882 5.47262 5.49295 5.56118 5.64223 5.65743 5.68170 5.70393 5.79676 5.85717 5.86774 5.92745 6.01455 6.05154 6.11968 6.12285 6.28450 6.33179 6.34447 6.42856 6.56202 6.63822 6.75600 6.90290 7.08111 7.41077 7.70521 7.75552 8.32560 8.49140 9.60589 10.17182 10.51418 11.53400 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003638 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.598704 B = 7694.979581 C = 9061.095123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.044 0.956 4 C -0.132 4.132 5 C 0.146 3.854 6 H 0.110 0.890 7 C -0.162 4.162 8 N -0.706 5.706 9 C 0.593 3.407 10 O -0.489 6.489 11 C 0.014 3.986 12 N -0.392 5.392 13 C 0.072 3.928 14 C 0.004 3.996 15 C -0.139 4.139 16 C -0.138 4.138 17 C -0.132 4.132 18 C -0.268 4.268 19 S 0.167 5.833 20 N -0.720 5.720 21 C -0.236 4.236 22 H 0.066 0.934 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.392 0.608 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.181 0.819 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 14.972 -17.143 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.062 0.938 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.128 0.872 7 C -0.221 4.221 8 N -0.358 5.358 9 C 0.374 3.626 10 O -0.361 6.361 11 C -0.264 4.264 12 N -0.108 5.108 13 C -0.066 4.066 14 C 0.001 3.999 15 C -0.197 4.197 16 C -0.196 4.196 17 C -0.190 4.190 18 C -0.408 4.408 19 S 0.423 5.577 20 N -0.362 5.362 21 C -0.368 4.368 22 H 0.084 0.916 23 C -0.206 4.206 24 N -0.579 5.579 25 Si 0.733 3.267 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.198 0.802 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.906 14.118 -16.799 22.486 hybrid contribution 0.478 1.163 1.000 1.607 sum 5.384 15.281 -15.799 22.629 Atomic orbital electron populations 1.22456 0.99440 1.00855 0.99792 1.20231 0.91675 0.95491 0.86567 0.93753 1.22194 0.93326 1.02543 0.98971 1.21146 0.95463 0.78821 1.00320 0.87174 1.22202 1.01686 1.00317 0.97862 1.45768 1.15299 1.12322 1.62443 1.16617 0.82827 0.83871 0.79305 1.90887 1.50759 1.53623 1.40868 1.27673 0.93578 0.99253 1.05853 1.66447 1.18842 1.10168 1.15306 1.20221 0.97512 0.88705 1.00161 1.19209 0.90285 0.94368 0.96058 1.21901 1.01831 0.99103 0.96836 1.21925 1.01475 0.98989 0.97213 1.21736 0.96119 0.98188 1.02935 1.26387 0.98193 1.06248 1.09994 1.83733 1.18745 1.00991 1.54229 1.42382 1.78009 1.10556 1.05233 1.19095 1.36684 0.93635 0.87356 0.91601 1.24676 1.02089 0.95910 0.97900 1.69627 1.50802 1.08584 1.28886 0.86353 0.77635 0.78782 0.83955 1.21405 1.21673 1.21382 0.93470 0.92878 0.94702 0.91882 0.90209 0.92358 0.91344 0.92961 0.77392 0.92531 0.92024 0.91755 0.91712 0.92352 0.92492 0.91328 0.92449 0.92672 0.80173 0.78294 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.18 2.84 -67.93 -0.19 2.99 16 3 H 0.04 0.85 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.94 4.29 -26.73 -0.11 -2.06 16 5 C 0.15 2.33 2.52 -67.93 -0.17 2.16 16 6 H 0.11 2.31 7.05 -51.93 -0.37 1.94 16 7 C -0.16 -2.17 9.48 37.16 0.35 -1.81 16 8 N -0.71 -10.59 4.44 -54.94 -0.24 -10.83 16 9 C 0.59 10.64 7.77 -12.60 -0.10 10.54 16 10 O -0.49 -10.98 16.73 5.25 0.09 -10.89 16 11 C 0.01 0.21 7.46 -14.43 -0.11 0.10 16 12 N -0.39 -6.34 9.52 -7.69 -0.07 -6.41 16 13 C 0.07 0.91 5.38 -84.49 -0.45 0.45 16 14 C 0.00 0.04 0.90 -155.66 -0.14 -0.10 16 15 C -0.14 -1.31 8.42 37.16 0.31 -1.00 16 16 C -0.14 -1.06 8.12 37.16 0.30 -0.76 16 17 C -0.13 -1.49 7.89 37.16 0.29 -1.20 16 18 C -0.27 -2.75 10.10 29.32 0.30 -2.46 16 19 S 0.17 1.79 22.31 -107.50 -2.40 -0.61 16 20 N -0.72 -17.58 4.49 -53.42 -0.24 -17.82 16 21 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 25 Si 0.90 23.20 29.55 -169.99 -5.02 18.18 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.39 4.69 7.75 -40.82 -0.32 4.37 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.36 7.07 -51.93 -0.37 0.00 16 44 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.18 1.29 7.23 -52.49 -0.38 0.91 16 48 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 49 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 412.20 15.07 6.21 6.21 Total: -1.00 -34.22 412.20 -9.01 -43.23 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.44 Total: 9.56 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 0.39 Total: -2.74 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.17 Total: -62.93 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.40 Total: -0.61 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.22 -9.01 -43.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134657715.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.908 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds